RchiOBHm_Chr1g0328131

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
Physical Location & Seq
Forward (+)
17415613 .. 17421821
6209 bp
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UTR
Exon/CDS
Intron
PRQ55758

Sequence Viewer

Length: 288 bp
ATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCGTTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCGCTTAAGAATTTGTGCGATGCTGGCATTGTCCAGCCCTATCCTCCTCTCTGTGATGTTAAAGGGAGCTATGTATCTCAGTTTGAGCATACAATTTTACTCCGGCCAACCTGCAAAGAGGTCATATCAAGAGGCGATGATTACTGA

Protein Analysis

95

Amino Acids

10.86

Weight (kDa)

9.18

Isoelectric Point (pI)

37.93

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 260
AciI CCGC 1 cut(s) 115
AcoI YGGCCR 2 cut(s) 19, 245
AcsI RAATTY 2 cut(s) 7, 151
AfiI CCNNNNNNNGG 1 cut(s) 121
AflII CTTAAG 1 cut(s) 146
AjnI CCWGG 1 cut(s) 117
AluBI AGCT 1 cut(s) 210
AluI AGCT 1 cut(s) 210
Alw26I GTCTC 1 cut(s) 119
AoxI GGCC 2 cut(s) 19, 245
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 2 cut(s) 7, 151
AspA2I CCTAGG 1 cut(s) 41
AspLEI GCGC 1 cut(s) 145
AsuNHI GCTAGC 1 cut(s) 58
AvrII CCTAGG 1 cut(s) 41
BbvI GCAGC 1 cut(s) 24
BciT130I CCWGG 1 cut(s) 119
BcoDI GTCTC 1 cut(s) 119
BfaI CTAG 2 cut(s) 42, 59
BfmI CTRYAG 1 cut(s) 97
BfoI RGCGCY 1 cut(s) 146
BfrI CTTAAG 1 cut(s) 146
BfuAI ACCTGC 1 cut(s) 260
BisI GCNGC 1 cut(s) 38
BlnI CCTAGG 1 cut(s) 41
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 1 cut(s) 119
BmrFI CCNGG 1 cut(s) 119
BmsI GCATC 2 cut(s) 4, 151
BmtI GCTAGC 1 cut(s) 62
BsaI GGTCTC 1 cut(s) 119
BsaJI CCNNGG 2 cut(s) 41, 118
BsaXI ACNNNNNCTCC 2 cut(s) 116, 146
Bsc4I CCNNNNNNNGG 1 cut(s) 121
Bse118I RCCGGY 1 cut(s) 17
BseBI CCWGG 1 cut(s) 119
BseDI CCNNGG 2 cut(s) 41, 118
BseGI GGATG 1 cut(s) 24
BseLI CCNNNNNNNGG 1 cut(s) 121
BseMII CTCAG 2 cut(s) 23, 233
BseRI GAGGAG 1 cut(s) 177
BseXI GCAGC 1 cut(s) 24
BshFI GGCC 2 cut(s) 21, 247
BsiSI CCGG 2 cut(s) 18, 244
BslI CCNNNNNNNGG 1 cut(s) 121
BsmAI GTCTC 1 cut(s) 119
BsnI GGCC 2 cut(s) 21, 247
Bso31I GGTCTC 1 cut(s) 119
BspACI CCGC 1 cut(s) 115
BspANI GGCC 2 cut(s) 21, 247
BspCNI CTCAG 2 cut(s) 24, 232
BspMAI CTGCAG 1 cut(s) 101
BspMI ACCTGC 1 cut(s) 260
BspOI GCTAGC 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 146
BspTNI GGTCTC 1 cut(s) 119
BsrFI RCCGGY 1 cut(s) 17
BssAI RCCGGY 1 cut(s) 17
BssECI CCNNGG 2 cut(s) 41, 118
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 1 cut(s) 119
BstAFI CTTAAG 1 cut(s) 146
BstC8I GCNNGC 4 cut(s) 19, 60, 101, 166
BstDEI CTNAG 2 cut(s) 32, 219
BstF5I GGATG 1 cut(s) 24
BstH2I RGCGCY 1 cut(s) 146
BstHHI GCGC 1 cut(s) 145
BstMAI GTCTC 1 cut(s) 119
BstMWI GCNNNNNNNGC 1 cut(s) 165
BstNI CCWGG 1 cut(s) 119
BstSCI CCNGG 1 cut(s) 117
BstSFI CTRYAG 1 cut(s) 97
BstV1I GCAGC 1 cut(s) 24
BsuRI GGCC 2 cut(s) 21, 247
BtgZI GCGATG 1 cut(s) 174
BtsCI GGATG 1 cut(s) 24
BtsIMutI CAGTG 1 cut(s) 29
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 4 cut(s) 19, 60, 101, 166
CfoI GCGC 1 cut(s) 145
Cfr10I RCCGGY 1 cut(s) 17
CviJI RGCY 5 cut(s) 21, 37, 178, 210, 247
CviKI_1 RGCY 5 cut(s) 21, 37, 178, 210, 247
DdeI CTNAG 2 cut(s) 32, 219
EaeI YGGCCR 2 cut(s) 19, 245
Eco130I CCWWGG 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 119
EcoRII CCWGG 1 cut(s) 117
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaiI YATR 4 cut(s) 140, 213, 231, 266
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 1 cut(s) 11
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 2 cut(s) 42, 59
GlaI GCGC 1 cut(s) 144
GluI GCNGC 1 cut(s) 38
HaeII RGCGCY 1 cut(s) 146
HaeIII GGCC 2 cut(s) 21, 247
HapII CCGG 2 cut(s) 18, 244
HhaI GCGC 1 cut(s) 145
Hin6I GCGC 1 cut(s) 143
HinP1I GCGC 1 cut(s) 143
HpaII CCGG 2 cut(s) 18, 244
Hpy188III TCNNGA 1 cut(s) 270
HpyCH4V TGCA 2 cut(s) 99, 255
HpyF10VI GCNNNNNNNGC 1 cut(s) 165
HpyF3I CTNAG 2 cut(s) 32, 219
HspAI GCGC 1 cut(s) 143
KroI GCCGGC 1 cut(s) 17
KroNI GCCGGC 1 cut(s) 19
LmnI GCTCC 1 cut(s) 207
LpnPI CCDG 8 cut(s) 31, 85, 104, 131, 150, 188, 257, 265
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 2 cut(s) 4, 151
MaeI CTAG 2 cut(s) 42, 59
MfeI CAATTG 1 cut(s) 53
MluCI AATT 5 cut(s) 7, 53, 66, 151, 234
MnlI CCTC 5 cut(s) 27, 195, 198, 253, 266
MroNI GCCGGC 1 cut(s) 17
MseI TTAA 3 cut(s) 69, 147, 201
MspCI CTTAAG 1 cut(s) 146
MspI CCGG 2 cut(s) 18, 244
MspR9I CCNGG 1 cut(s) 119
MunI CAATTG 1 cut(s) 53
MvaI CCWGG 1 cut(s) 119
MwoI GCNNNNNNNGC 1 cut(s) 165
NaeI GCCGGC 1 cut(s) 19
NgoMIV GCCGGC 1 cut(s) 17
NheI GCTAGC 1 cut(s) 58
PdiI GCCGGC 1 cut(s) 19
PkrI GCNGC 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 117
PspGI CCWGG 1 cut(s) 117
PstI CTGCAG 1 cut(s) 101
SaqAI TTAA 3 cut(s) 69, 147, 201
SatI GCNGC 1 cut(s) 38
ScrFI CCNGG 1 cut(s) 119
SetI ASST 3 cut(s) 212, 254, 264
SfaNI GCATC 2 cut(s) 4, 151
SfcI CTRYAG 1 cut(s) 97
SmlI CTYRAG 1 cut(s) 146
SmoI CTYRAG 1 cut(s) 146
Sse9I AATT 5 cut(s) 7, 53, 66, 151, 234
SsiI CCGC 1 cut(s) 115
SspMI CTAG 2 cut(s) 42, 59
StyD4I CCNGG 1 cut(s) 117
StyI CCWWGG 1 cut(s) 41
TasI AATT 5 cut(s) 7, 53, 66, 151, 234
Tru1I TTAA 3 cut(s) 69, 147, 201
Tru9I TTAA 3 cut(s) 69, 147, 201
TscAI CASTG 1 cut(s) 36
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 1 cut(s) 17
TspRI CASTG 1 cut(s) 36
Vha464I CTTAAG 1 cut(s) 146
XapI RAATTY 2 cut(s) 7, 151
XcmI CCANNNNNNNNNTGG 1 cut(s) 136
XmaJI CCTAGG 1 cut(s) 41
XspI CTAG 2 cut(s) 42, 59
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.