Rh1BG072600

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1B
Physical Location & Seq
Forward (+)
11217146 .. 11223823
6678 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1BG072600.1

Sequence Viewer

Length: 1368 bp
ATGGCAGGGGAGAACTTGGATGAAAATATTCCTTGCGAGGAAAATGGGACTATAGAATCTTCGAACGGCAATGGTAATGGAGAAGGCGCTCAACAATCTCCAACTGTTGAGAAAGATGAGGATGAAGACAAAGATCAGACTTGGCCTATTCTCGAAAGTAGTGAAGGCCACATTAAGAAAAAGAAAGCACAGGCAGAGCATACTGATCCACAATCTTTAAGTGGGCAAACTGATCCACAATCTACAAGTAGGCAAACTGTTCCACAATCTACAAGTTGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCACATGGGGAGTTTCCTGAGGGCGAAATTCAACAATACAGAGATGACAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAAGTTAATATCCGAGAATGGTCTGGAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCTCAAATACAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAATTAGATTTTGGAACTCATGTTGATGGTCATATAGTTGACTGTGCATTTACAGTAGCATTCAATCCTATGTTTGATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCCTGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGTTAAAAGTATCCGGAACTTGAATGGACATAGCATTGGACCTTACCAAATCCATGCTGGAAAATCAGTTCCCATTGTGAAAGGAGGGGAGCAGACAAAAATGGAAGAGGGTGAATTTTTTGCGATTGAAACTTTCGCATCAACTGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCGTTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCACTTAAGAATTTGTGCGATGCTGGCATTGTCCAGCCTCTTCCTCCTCTCTGTGATGTTAAAGGGAGCTATGTATCTCAGTCTGAGCATACAATTTTACTCCGGCCAACCTGCAAAGAGGTCTTATCAAGAGGCGATGATTACTGA

Protein Analysis

455

Amino Acids

50.81

Weight (kDa)

5.08

Isoelectric Point (pI)

38.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Peptidase_M24 PF00557 146 - 349 4.3e-27 Metallopeptidase family M24
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1340
AccIII TCCGGA 1 cut(s) 906
AciI CCGC 1 cut(s) 1195
AclWI GGATC 4 cut(s) 200, 227, 281, 746
AcoI YGGCCR 2 cut(s) 1099, 1325
AcsI RAATTY 4 cut(s) 345, 1007, 1087, 1231
AcuI CTGAAG 2 cut(s) 408, 641
AcvI CACGTG 1 cut(s) 773
AfaI GTAC 1 cut(s) 468
AfiI CCNNNNNNNGG 2 cut(s) 325, 1201
AflII CTTAAG 1 cut(s) 1226
AgsI TTSAA 8 cut(s) 350, 416, 607, 739, 764, 872, 916, 1022
AjnI CCWGG 4 cut(s) 462, 496, 852, 1197
AjuI GAANNNNNNNTTGG 2 cut(s) 386, 418
AloI GAACNNNNNNTCC 2 cut(s) 945, 977
AluBI AGCT 2 cut(s) 446, 1290
AluI AGCT 2 cut(s) 446, 1290
Alw26I GTCTC 2 cut(s) 518, 1199
AlwI GGATC 4 cut(s) 200, 227, 281, 746
Aor13HI TCCGGA 1 cut(s) 906
AoxI GGCC 4 cut(s) 143, 166, 1099, 1325
ApeKI GCWGC 5 cut(s) 446, 617, 836, 1071, 1117
ApoI RAATTY 4 cut(s) 345, 1007, 1087, 1231
Asp700I GAANNNNTTC 1 cut(s) 27
AspA2I CCTAGG 1 cut(s) 1121
AspLEI GCGC 2 cut(s) 89, 411
AspS9I GGNCC 2 cut(s) 627, 932
AsuHPI GGTGA 1 cut(s) 1016
AsuII TTCGAA 1 cut(s) 62
AsuNHI GCTAGC 1 cut(s) 1138
AvaII GGWCC 2 cut(s) 627, 932
AvrII CCTAGG 1 cut(s) 1121
AxyI CCTNAGG 1 cut(s) 336
BbrPI CACGTG 1 cut(s) 773
BbsI GAAGAC 1 cut(s) 132
BbvI GCAGC 5 cut(s) 433, 604, 823, 1083, 1104
BccI CCATC 2 cut(s) 301, 695
BceAI ACGGC 1 cut(s) 82
BciT130I CCWGG 4 cut(s) 464, 498, 854, 1199
BciVI GTATCC 1 cut(s) 914
BcoDI GTCTC 2 cut(s) 518, 1199
BfaI CTAG 3 cut(s) 1064, 1122, 1139
BfmI CTRYAG 3 cut(s) 51, 447, 1177
BfoI RGCGCY 2 cut(s) 90, 412
BfrI CTTAAG 1 cut(s) 1226
BfuAI ACCTGC 1 cut(s) 1340
BfuI GTATCC 1 cut(s) 914
BglII AGATCT 1 cut(s) 1060
BisI GCNGC 5 cut(s) 447, 618, 837, 1072, 1118
BlnI CCTAGG 1 cut(s) 1121
BlsI GCNGC 5 cut(s) 448, 619, 838, 1073, 1119
Bme1390I CCNGG 4 cut(s) 464, 498, 854, 1199
Bme18I GGWCC 2 cut(s) 627, 932
BmgT120I GGNCC 2 cut(s) 627, 932
BmrFI CCNGG 4 cut(s) 464, 498, 854, 1199
BmrI ACTGGG 1 cut(s) 1047
BmsI GCATC 4 cut(s) 587, 1040, 1084, 1231
BmtI GCTAGC 1 cut(s) 1142
BmuI ACTGGG 1 cut(s) 1047
BpiI GAAGAC 1 cut(s) 132
Bpu14I TTCGAA 1 cut(s) 62
BsaAI YACGTR 1 cut(s) 773
BsaI GGTCTC 1 cut(s) 1199
BsaJI CCNNGG 2 cut(s) 1121, 1198
BsaWI WCCGGW 1 cut(s) 906
BsaXI ACNNNNNCTCC 2 cut(s) 1196, 1226
Bsc4I CCNNNNNNNGG 2 cut(s) 325, 1201
Bse118I RCCGGY 1 cut(s) 1097
Bse1I ACTGG 1 cut(s) 1042
Bse21I CCTNAGG 1 cut(s) 336
Bse3DI GCAATG 2 cut(s) 76, 579
BseAI TCCGGA 1 cut(s) 906
BseBI CCWGG 4 cut(s) 464, 498, 854, 1199
BseDI CCNNGG 2 cut(s) 1121, 1198
BseGI GGATG 5 cut(s) 25, 127, 293, 602, 1104
BseLI CCNNNNNNNGG 2 cut(s) 325, 1201
BseMI GCAATG 2 cut(s) 76, 579
BseMII CTCAG 4 cut(s) 327, 1103, 1296, 1313
BseNI ACTGG 1 cut(s) 1042
BseRI GAGGAG 1 cut(s) 1257
BseXI GCAGC 5 cut(s) 433, 604, 823, 1083, 1104
BsgI GTGCAG 1 cut(s) 1090
BshFI GGCC 4 cut(s) 145, 168, 1101, 1327
BsiSI CCGG 3 cut(s) 907, 1098, 1324
BslFI GGGAC 2 cut(s) 61, 656
BslI CCNNNNNNNGG 2 cut(s) 325, 1201
BsmAI GTCTC 2 cut(s) 518, 1199
BsmFI GGGAC 2 cut(s) 61, 656
BsmI GAATGC 2 cut(s) 584, 734
BsnI GGCC 4 cut(s) 145, 168, 1101, 1327
Bso31I GGTCTC 1 cut(s) 1199
Bsp119I TTCGAA 1 cut(s) 62
Bsp13I TCCGGA 1 cut(s) 906
Bsp143I GATC 7 cut(s) 133, 205, 232, 286, 310, 751, 1060
BspACI CCGC 1 cut(s) 1195
BspANI GGCC 4 cut(s) 145, 168, 1101, 1327
BspCNI CTCAG 4 cut(s) 328, 1104, 1297, 1312
BspEI TCCGGA 1 cut(s) 906
BspMAI CTGCAG 2 cut(s) 451, 1181
BspMI ACCTGC 1 cut(s) 1340
BspOI GCTAGC 1 cut(s) 1142
BspPI GGATC 4 cut(s) 200, 227, 281, 746
BspT104I TTCGAA 1 cut(s) 62
BspTI CTTAAG 1 cut(s) 1226
BspTNI GGTCTC 1 cut(s) 1199
BsrDI GCAATG 2 cut(s) 76, 579
BsrFI RCCGGY 1 cut(s) 1097
BsrI ACTGG 1 cut(s) 1042
BssAI RCCGGY 1 cut(s) 1097
BssECI CCNNGG 2 cut(s) 1121, 1198
BssMI GATC 7 cut(s) 133, 205, 232, 286, 310, 751, 1060
BssT1I CCWWGG 1 cut(s) 1121
Bst2UI CCWGG 4 cut(s) 464, 498, 854, 1199
Bst4CI ACNGT 6 cut(s) 106, 259, 541, 652, 719, 730
Bst6I CTCTTC 4 cut(s) 384, 389, 993, 1266
BstAFI CTTAAG 1 cut(s) 1226
BstAPI GCANNNNNTGC 1 cut(s) 581
BstBAI YACGTR 1 cut(s) 773
BstBI TTCGAA 1 cut(s) 62
BstC8I GCNNGC 5 cut(s) 577, 1099, 1140, 1181, 1246
BstDEI CTNAG 4 cut(s) 336, 1112, 1299, 1305
BstF5I GGATG 5 cut(s) 25, 127, 293, 602, 1104
BstH2I RGCGCY 2 cut(s) 90, 412
BstHHI GCGC 2 cut(s) 89, 411
BstKTI GATC 7 cut(s) 136, 208, 235, 289, 313, 754, 1063
BstMAI GTCTC 2 cut(s) 518, 1199
BstMBI GATC 7 cut(s) 133, 205, 232, 286, 310, 751, 1060
BstMWI GCNNNNNNNGC 2 cut(s) 581, 1245
BstNI CCWGG 4 cut(s) 464, 498, 854, 1199
BstSCI CCNGG 4 cut(s) 462, 496, 852, 1197
BstSFI CTRYAG 3 cut(s) 51, 447, 1177
BstV1I GCAGC 5 cut(s) 433, 604, 823, 1083, 1104
BstV2I GAAGAC 1 cut(s) 132
BstX2I RGATCY 1 cut(s) 1060
BstYI RGATCY 1 cut(s) 1060
Bsu36I CCTNAGG 1 cut(s) 336
BsuI GTATCC 1 cut(s) 914
BsuRI GGCC 4 cut(s) 145, 168, 1101, 1327
BtgZI GCGATG 2 cut(s) 443, 1254
BtsCI GGATG 5 cut(s) 25, 127, 293, 602, 1104
BtsIMutI CAGTG 1 cut(s) 1109
BveI ACCTGC 1 cut(s) 1340
Cac8I GCNNGC 5 cut(s) 577, 1099, 1140, 1181, 1246
CfoI GCGC 2 cut(s) 89, 411
Cfr10I RCCGGY 1 cut(s) 1097
Cfr13I GGNCC 2 cut(s) 627, 932
CseI GACGC 1 cut(s) 806
Csp6I GTAC 1 cut(s) 467
CviAII CATG 4 cut(s) 323, 695, 947, 1081
CviQI GTAC 1 cut(s) 467
DdeI CTNAG 4 cut(s) 336, 1112, 1299, 1305
DpnI GATC 7 cut(s) 135, 207, 234, 288, 312, 753, 1062
DpnII GATC 7 cut(s) 133, 205, 232, 286, 310, 751, 1060
DraI TTTAAA 1 cut(s) 492
EaeI YGGCCR 2 cut(s) 1099, 1325
Eam1104I CTCTTC 4 cut(s) 384, 389, 993, 1266
EarI CTCTTC 4 cut(s) 384, 389, 993, 1266
Eco130I CCWWGG 1 cut(s) 1121
Eco31I GGTCTC 1 cut(s) 1199
Eco47I GGWCC 2 cut(s) 627, 932
Eco57I CTGAAG 2 cut(s) 408, 641
Eco72I CACGTG 1 cut(s) 773
Eco81I CCTNAGG 1 cut(s) 336
EcoRII CCWGG 4 cut(s) 462, 496, 852, 1197
EcoT14I CCWWGG 1 cut(s) 1121
ErhI CCWWGG 1 cut(s) 1121
FaeI CATG 4 cut(s) 326, 698, 950, 1084
FaqI GGGAC 2 cut(s) 61, 656
FatI CATG 4 cut(s) 322, 694, 946, 1080
FauNDI CATATG 1 cut(s) 862
Fnu4HI GCNGC 5 cut(s) 447, 618, 837, 1072, 1118
FokI GGATG 5 cut(s) 32, 134, 280, 609, 1091
Fsp4HI GCNGC 5 cut(s) 447, 618, 837, 1072, 1118
FspBI CTAG 3 cut(s) 1064, 1122, 1139
GlaI GCGC 2 cut(s) 88, 410
GluI GCNGC 5 cut(s) 447, 618, 837, 1072, 1118
HaeII RGCGCY 2 cut(s) 90, 412
HaeIII GGCC 4 cut(s) 145, 168, 1101, 1327
HapII CCGG 3 cut(s) 907, 1098, 1324
HgaI GACGC 1 cut(s) 806
HhaI GCGC 2 cut(s) 89, 411
Hin1II CATG 4 cut(s) 326, 698, 950, 1084
Hin6I GCGC 2 cut(s) 87, 409
HinP1I GCGC 2 cut(s) 87, 409
HincII GTYRAC 1 cut(s) 715
HindII GTYRAC 1 cut(s) 715
HinfI GANTC 3 cut(s) 56, 800, 857
HpaII CCGG 3 cut(s) 907, 1098, 1324
HphI GGTGA 1 cut(s) 1016
Hpy166II GTNNAC 1 cut(s) 715
Hpy188I TCNGA 6 cut(s) 138, 388, 482, 559, 1055, 1306
Hpy188III TCNNGA 7 cut(s) 152, 335, 569, 804, 907, 1064, 1350
Hpy8I GTNNAC 1 cut(s) 715
Hpy99I CGWCG 1 cut(s) 444
HpyAV CCTTC 3 cut(s) 77, 158, 877
HpyCH4III ACNGT 6 cut(s) 106, 259, 541, 652, 719, 730
HpyCH4IV ACGT 1 cut(s) 772
HpyCH4V TGCA 7 cut(s) 449, 584, 722, 839, 1071, 1179, 1335
HpyF10VI GCNNNNNNNGC 2 cut(s) 581, 1245
HpyF3I CTNAG 4 cut(s) 336, 1112, 1299, 1305
HpySE526I ACGT 1 cut(s) 772
Hsp92II CATG 4 cut(s) 326, 698, 950, 1084
HspAI GCGC 2 cut(s) 87, 409
Kpn2I TCCGGA 1 cut(s) 906
KroI GCCGGC 1 cut(s) 1097
KroNI GCCGGC 1 cut(s) 1099
Kzo9I GATC 7 cut(s) 133, 205, 232, 286, 310, 751, 1060
LmnI GCTCC 3 cut(s) 406, 982, 1287
Lsp1109I GCAGC 5 cut(s) 433, 604, 823, 1083, 1104
LweI GCATC 4 cut(s) 587, 1040, 1084, 1231
MaeI CTAG 3 cut(s) 1064, 1122, 1139
MaeII ACGT 1 cut(s) 772
MalI GATC 7 cut(s) 135, 207, 234, 288, 312, 753, 1062
MboI GATC 7 cut(s) 133, 205, 232, 286, 310, 751, 1060
MboII GAAGA 7 cut(s) 51, 137, 401, 406, 1010, 1070, 1253
MfeI CAATTG 1 cut(s) 1133
MflI RGATCY 1 cut(s) 1060
MlyI GAGTC 1 cut(s) 809
MmeI TCCRAC 2 cut(s) 125, 384
MroI TCCGGA 1 cut(s) 906
MroNI GCCGGC 1 cut(s) 1097
MroXI GAANNNNTTC 1 cut(s) 27
MseI TTAA 8 cut(s) 174, 218, 491, 551, 897, 1149, 1227, 1281
MslI CAYNNNNRTG 1 cut(s) 699
MspCI CTTAAG 1 cut(s) 1226
MspI CCGG 3 cut(s) 907, 1098, 1324
MspR9I CCNGG 4 cut(s) 464, 498, 854, 1199
MunI CAATTG 1 cut(s) 1133
Mva1269I GAATGC 2 cut(s) 584, 734
MvaI CCWGG 4 cut(s) 464, 498, 854, 1199
MwoI GCNNNNNNNGC 2 cut(s) 581, 1245
NaeI GCCGGC 1 cut(s) 1099
NdeI CATATG 1 cut(s) 862
NdeII GATC 7 cut(s) 133, 205, 232, 286, 310, 751, 1060
NgoMIV GCCGGC 1 cut(s) 1097
NheI GCTAGC 1 cut(s) 1138
NlaIII CATG 4 cut(s) 326, 698, 950, 1084
NspV TTCGAA 1 cut(s) 62
PctI GAATGC 2 cut(s) 584, 734
PdiI GCCGGC 1 cut(s) 1099
PdmI GAANNNNTTC 1 cut(s) 27
PfeI GAWTC 2 cut(s) 56, 857
PfoI TCCNGGA 1 cut(s) 852
PkrI GCNGC 5 cut(s) 448, 619, 838, 1073, 1119
PleI GAGTC 1 cut(s) 808
PmaCI CACGTG 1 cut(s) 773
PmlI CACGTG 1 cut(s) 773
PpsI GAGTC 1 cut(s) 808
Ppu21I YACGTR 1 cut(s) 773
Psp6I CCWGG 4 cut(s) 462, 496, 852, 1197
PspCI CACGTG 1 cut(s) 773
PspGI CCWGG 4 cut(s) 462, 496, 852, 1197
PspPI GGNCC 2 cut(s) 627, 932
PstI CTGCAG 2 cut(s) 451, 1181
PsuI RGATCY 1 cut(s) 1060
RsaI GTAC 1 cut(s) 468
RsaNI GTAC 1 cut(s) 467
RseI CAYNNNNRTG 1 cut(s) 699
SaqAI TTAA 8 cut(s) 174, 218, 491, 551, 897, 1149, 1227, 1281
SatI GCNGC 5 cut(s) 447, 618, 837, 1072, 1118
Sau3AI GATC 7 cut(s) 133, 205, 232, 286, 310, 751, 1060
Sau96I GGNCC 2 cut(s) 627, 932
SchI GAGTC 1 cut(s) 809
ScrFI CCNGG 4 cut(s) 464, 498, 854, 1199
SfaNI GCATC 4 cut(s) 587, 1040, 1084, 1231
SfcI CTRYAG 3 cut(s) 51, 447, 1177
SfuI TTCGAA 1 cut(s) 62
SinI GGWCC 2 cut(s) 627, 932
SmiMI CAYNNNNRTG 1 cut(s) 699
SmlI CTYRAG 1 cut(s) 1226
SmoI CTYRAG 1 cut(s) 1226
SsiI CCGC 1 cut(s) 1195
SspI AATATT 1 cut(s) 28
SspMI CTAG 3 cut(s) 1064, 1122, 1139
StyD4I CCNGG 4 cut(s) 462, 496, 852, 1197
StyI CCWWGG 1 cut(s) 1121
TaaI ACNGT 6 cut(s) 106, 259, 541, 652, 719, 730
TaiI ACGT 1 cut(s) 775
TaqI TCGA 3 cut(s) 62, 153, 442
TfiI GAWTC 2 cut(s) 56, 857
Tru1I TTAA 8 cut(s) 174, 218, 491, 551, 897, 1149, 1227, 1281
Tru9I TTAA 8 cut(s) 174, 218, 491, 551, 897, 1149, 1227, 1281
TscAI CASTG 1 cut(s) 1116
TseI GCWGC 5 cut(s) 446, 617, 836, 1071, 1117
TspDTI ATGAA 5 cut(s) 36, 138, 446, 689, 1097
TspGWI ACGGA 2 cut(s) 484, 533
TspRI CASTG 1 cut(s) 1116
Vha464I CTTAAG 1 cut(s) 1226
VpaK11BI GGWCC 2 cut(s) 627, 932
XapI RAATTY 4 cut(s) 345, 1007, 1087, 1231
XbaI TCTAGA 1 cut(s) 1063
XcmI CCANNNNNNNNNTGG 2 cut(s) 947, 1216
XmaJI CCTAGG 1 cut(s) 1121
XmnI GAANNNNTTC 1 cut(s) 27
XspI CTAG 3 cut(s) 1064, 1122, 1139
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.