Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0003170

Physical Location & Seq

Genomic Coordinates Reverse (-)

17914440 .. 17919990

Gene Structure 5551 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG094600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGTCTTTTCTTATGTGCAGGAAAAAGAAAGCACATGCTGAGCATACTGATCCACAATCTTTAAGTGGGCAAACTGATCCACAATCTACAACTAGGCAAACTGCTCCACAATCTACAACTAGGCAAACTGATCCACCATCCATTCCTCTTATTGATCTGTTCCCACATGGGGAGTTTCCTGAGGGCGAAATTCAACAATACAGAGATGACAACTTGTGGAGGACTACTTCTGAAGAGAAGAGGGAGTTGGAGCGCCTTGAAAAACCATTATATAATTCAGTTCGTCGAGCTGCAGAAGTTCATCGCCAGGTACGGAAATACATCAGAGGGATTTTAAAGCCTGGAATGTTGATGACTGATTTGTGTGAGACTTTGGAGAACACAGTCCGTAAGTTAATATCCGAGAATGGTCTGGAAGCAGGCATTGCATTCCCCACAGGATGCTCTTTGAATTGGGTTGCTGCTCATTGGACCCCAAATACAGGGGACAAGACGGTGCTTCAGTATGATGATGTGATGAAATTAGACTTTGGAACTCATGTTGATGGTCATATAGTTGACTGTGCATTTACAGTAGCATTCAATCCTATGTTTGATCCACTACTTGAAGCCTCACGTGAAGCAACAAATACGGGTATCAAGGAGTCTGGAATTGATGTGCGTCTTTGTGATGTTGGTGCTGCAATCCAAGAAGTCATGGAATCATATGAGGTTGAAATAAATGGGAAGGTGTATCAAGTTAAAAGTATCCGGAACTTGAATGGACATAGCATTGGACCTTACCAAATCCATGCTGGAAAATCAGTTCCCATTGTGAAAGGAGGGGAGCAGACAAAAATGGAAGAGGGTGAATTTTTTGCGATTGAAACTTTCGCATCAACTGGGAAAGGATATGTCAGAGAAGATCTAGAGTGCAGCCATTACATGAAAAATTTTGATGCCGGCCACATCCCACTGAGGCTGCCTAGGGCAAAGCAATTGCTAGCAACAATTAACAAGAACTTCTCCACATTGGCATTCTGCAGGCGATATTTAGACCGCCTGGGGGAGACCAAGTATCTTATGGCGCTTAAGAATTTGTGCGATGCTGGCATTGTCCAGCCCTATCCTCCTCTCTGTGATGTTAAAGGGAGCTATGTATCTCAGTTTGAGCATACAATTTTACTCCGGCCAACCTGCAAAGAGGTCATATCAAGAGGCGATGATTACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006464 GO:0006807 GO:0008150 GO:0008152 GO:0009987 GO:0019538 GO:0031365 GO:0036211 GO:0043170 GO:0043412 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0071704 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M24

Protein Analysis

403

Amino Acids

45.44

Weight (kDa)

6.09

Isoelectric Point (pI)

33.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Peptidase_M24	PF00557	94 - 297	1.3e-27	Metallopeptidase family M24

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003170)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G44180 AT2G44180 AT3G59990 AT3G59990 AT3G59990 AT3G59990
fragaria_vesca	FvH4_5g31110 FvH4_5g31110 FvH4_5g31120
malus_domestica	MD17G1285400.v1.1
prunus_persica	Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1 Prupe.2G330300_v2.0.a1
pyrus_communis	pycom17g28120
rosa_chinensis	RchiOBHm_Chr1g0328111 RchiOBHm_Chr1g0328121 RchiOBHm_Chr1g0328131
rosa_laevigata	RLG00000029939
rosa_multiflora	Rmu_sc0000408.1_g000001 Rmu_sc0002809.1_g000034 Rmu_sc0004646.1_g000013 Rmu_sc0009961.1_g000001
rosa_roxburghii	Rroxscaffold_1G00060180 Rroxscaffold_4G00321810
rosa_rugosa	Rorug01G0073700 Rorug01G0073800.1 Rorug01G0073900
rosa_samantha	Rh1AG090800 Rh1BG072600 Rh1BG073300 Rh1BG073500 Rh1CG087200 Rh1DG094100 Rh1DG094600
rosa_wichuraiana	Rw1G007030 Rw1G007040

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	1184
AccIII	TCCGGA	1 cut(s)	750
AciI	CCGC	1 cut(s)	1039
AclWI	GGATC	4 cut(s)	44, 71, 125, 590
AcoI	YGGCCR	2 cut(s)	943, 1169
AcsI	RAATTY	4 cut(s)	189, 851, 931, 1075
AcuI	CTGAAG	2 cut(s)	252, 485
AcvI	CACGTG	1 cut(s)	617
AfaI	GTAC	1 cut(s)	312
AfiI	CCNNNNNNNGG	3 cut(s)	169, 482, 1045
AflII	CTTAAG	1 cut(s)	1070
AgsI	TTSAA	8 cut(s)	194, 260, 451, 583, 608, 716, 760, 866
AjnI	CCWGG	3 cut(s)	306, 340, 1041
AjuI	GAANNNNNNNTTGG	2 cut(s)	230, 262
AloI	GAACNNNNNNTCC	2 cut(s)	789, 821
AluBI	AGCT	2 cut(s)	290, 1134
AluI	AGCT	2 cut(s)	290, 1134
Alw26I	GTCTC	2 cut(s)	362, 1043
AlwI	GGATC	4 cut(s)	44, 71, 125, 590
Aor13HI	TCCGGA	1 cut(s)	750
AoxI	GGCC	2 cut(s)	943, 1169
ApeKI	GCWGC	5 cut(s)	290, 461, 680, 915, 961
ApoI	RAATTY	4 cut(s)	189, 851, 931, 1075
AspA2I	CCTAGG	1 cut(s)	965
AspLEI	GCGC	2 cut(s)	255, 1069
AspS9I	GGNCC	2 cut(s)	471, 776
AsuHPI	GGTGA	1 cut(s)	860
AsuNHI	GCTAGC	1 cut(s)	982
AvaII	GGWCC	2 cut(s)	471, 776
AvrII	CCTAGG	1 cut(s)	965
AxyI	CCTNAGG	1 cut(s)	180
BbrPI	CACGTG	1 cut(s)	617
BbvI	GCAGC	5 cut(s)	277, 448, 667, 927, 948
BccI	CCATC	2 cut(s)	145, 539
BciT130I	CCWGG	3 cut(s)	308, 342, 1043
BciVI	GTATCC	1 cut(s)	758
BcoDI	GTCTC	2 cut(s)	362, 1043
BfaI	CTAG	5 cut(s)	93, 120, 908, 966, 983
BfmI	CTRYAG	2 cut(s)	291, 1021
BfoI	RGCGCY	2 cut(s)	256, 1070
BfrI	CTTAAG	1 cut(s)	1070
BfuAI	ACCTGC	1 cut(s)	1184
BfuI	GTATCC	1 cut(s)	758
BglII	AGATCT	1 cut(s)	904
BisI	GCNGC	5 cut(s)	291, 462, 681, 916, 962
BlnI	CCTAGG	1 cut(s)	965
BlpI	GCTNAGC	1 cut(s)	39
BlsI	GCNGC	5 cut(s)	292, 463, 682, 917, 963
Bme1390I	CCNGG	3 cut(s)	308, 342, 1043
Bme18I	GGWCC	2 cut(s)	471, 776
BmgT120I	GGNCC	2 cut(s)	471, 776
BmiI	GGNNCC	1 cut(s)	473
BmrFI	CCNGG	3 cut(s)	308, 342, 1043
BmrI	ACTGGG	1 cut(s)	891
BmsI	GCATC	4 cut(s)	431, 884, 928, 1075
BmtI	GCTAGC	1 cut(s)	986
BmuI	ACTGGG	1 cut(s)	891
Bpu1102I	GCTNAGC	1 cut(s)	39
BsaAI	YACGTR	1 cut(s)	617
BsaI	GGTCTC	1 cut(s)	1043
BsaJI	CCNNGG	2 cut(s)	965, 1042
BsaWI	WCCGGW	1 cut(s)	750
BsaXI	ACNNNNNCTCC	2 cut(s)	1040, 1070
Bsc4I	CCNNNNNNNGG	3 cut(s)	169, 482, 1045
Bse118I	RCCGGY	1 cut(s)	941
Bse1I	ACTGG	1 cut(s)	886
Bse21I	CCTNAGG	1 cut(s)	180
Bse3DI	GCAATG	1 cut(s)	423
BseAI	TCCGGA	1 cut(s)	750
BseBI	CCWGG	3 cut(s)	308, 342, 1043
BseDI	CCNNGG	2 cut(s)	965, 1042
BseGI	GGATG	3 cut(s)	137, 446, 948
BseLI	CCNNNNNNNGG	3 cut(s)	169, 482, 1045
BseMI	GCAATG	1 cut(s)	423
BseMII	CTCAG	4 cut(s)	30, 171, 947, 1157
BseNI	ACTGG	1 cut(s)	886
BseRI	GAGGAG	1 cut(s)	1101
BseXI	GCAGC	5 cut(s)	277, 448, 667, 927, 948
BsgI	GTGCAG	2 cut(s)	37, 934
BshFI	GGCC	2 cut(s)	945, 1171
BsiSI	CCGG	3 cut(s)	751, 942, 1168
BslFI	GGGAC	1 cut(s)	500
BslI	CCNNNNNNNGG	3 cut(s)	169, 482, 1045
BsmAI	GTCTC	2 cut(s)	362, 1043
BsmFI	GGGAC	1 cut(s)	500
BsmI	GAATGC	3 cut(s)	428, 578, 1016
BsnI	GGCC	2 cut(s)	945, 1171
Bso31I	GGTCTC	1 cut(s)	1043
Bsp13I	TCCGGA	1 cut(s)	750
Bsp143I	GATC	6 cut(s)	49, 76, 130, 154, 595, 904
Bsp1720I	GCTNAGC	1 cut(s)	39
BspACI	CCGC	1 cut(s)	1039
BspANI	GGCC	2 cut(s)	945, 1171
BspCNI	CTCAG	4 cut(s)	31, 172, 948, 1156
BspEI	TCCGGA	1 cut(s)	750
BspLI	GGNNCC	1 cut(s)	473
BspMAI	CTGCAG	2 cut(s)	295, 1025
BspMI	ACCTGC	1 cut(s)	1184
BspOI	GCTAGC	1 cut(s)	986
BspPI	GGATC	4 cut(s)	44, 71, 125, 590
BspTI	CTTAAG	1 cut(s)	1070
BspTNI	GGTCTC	1 cut(s)	1043
BsrDI	GCAATG	1 cut(s)	423
BsrFI	RCCGGY	1 cut(s)	941
BsrI	ACTGG	1 cut(s)	886
BssAI	RCCGGY	1 cut(s)	941
BssECI	CCNNGG	2 cut(s)	965, 1042
BssMI	GATC	6 cut(s)	49, 76, 130, 154, 595, 904
BssT1I	CCWWGG	1 cut(s)	965
Bst2UI	CCWGG	3 cut(s)	308, 342, 1043
Bst4CI	ACNGT	4 cut(s)	385, 496, 563, 574
Bst6I	CTCTTC	3 cut(s)	228, 233, 837
BstAFI	CTTAAG	1 cut(s)	1070
BstAPI	GCANNNNNTGC	1 cut(s)	425
BstBAI	YACGTR	1 cut(s)	617
BstC8I	GCNNGC	5 cut(s)	421, 943, 984, 1025, 1090
BstDEI	CTNAG	4 cut(s)	39, 180, 956, 1143
BstF5I	GGATG	3 cut(s)	137, 446, 948
BstH2I	RGCGCY	2 cut(s)	256, 1070
BstHHI	GCGC	2 cut(s)	255, 1069
BstKTI	GATC	6 cut(s)	52, 79, 133, 157, 598, 907
BstMAI	GTCTC	2 cut(s)	362, 1043
BstMBI	GATC	6 cut(s)	49, 76, 130, 154, 595, 904
BstMWI	GCNNNNNNNGC	2 cut(s)	425, 1089
BstNI	CCWGG	3 cut(s)	308, 342, 1043
BstNSI	RCATGY	1 cut(s)	38
BstSCI	CCNGG	3 cut(s)	306, 340, 1041
BstSFI	CTRYAG	2 cut(s)	291, 1021
BstV1I	GCAGC	5 cut(s)	277, 448, 667, 927, 948
BstX2I	RGATCY	1 cut(s)	904
BstYI	RGATCY	1 cut(s)	904
Bsu36I	CCTNAGG	1 cut(s)	180
BsuI	GTATCC	1 cut(s)	758
BsuRI	GGCC	2 cut(s)	945, 1171
BtgZI	GCGATG	2 cut(s)	287, 1098
BtsCI	GGATG	3 cut(s)	137, 446, 948
BtsIMutI	CAGTG	1 cut(s)	953
BveI	ACCTGC	1 cut(s)	1184
Cac8I	GCNNGC	5 cut(s)	421, 943, 984, 1025, 1090
CfoI	GCGC	2 cut(s)	255, 1069
Cfr10I	RCCGGY	1 cut(s)	941
Cfr13I	GGNCC	2 cut(s)	471, 776
CseI	GACGC	1 cut(s)	650
Csp6I	GTAC	1 cut(s)	311
CviAII	CATG	6 cut(s)	35, 167, 539, 697, 791, 925
CviJI	RGCY	9 cut(s)	290, 340, 611, 918, 945, 961, 1102, 1134, 1171
CviKI_1	RGCY	9 cut(s)	290, 340, 611, 918, 945, 961, 1102, 1134, 1171
CviQI	GTAC	1 cut(s)	311
DdeI	CTNAG	4 cut(s)	39, 180, 956, 1143
DpnI	GATC	6 cut(s)	51, 78, 132, 156, 597, 906
DpnII	GATC	6 cut(s)	49, 76, 130, 154, 595, 904
DraI	TTTAAA	1 cut(s)	336
EaeI	YGGCCR	2 cut(s)	943, 1169
Eam1104I	CTCTTC	3 cut(s)	228, 233, 837
EarI	CTCTTC	3 cut(s)	228, 233, 837
Eco130I	CCWWGG	1 cut(s)	965
Eco31I	GGTCTC	1 cut(s)	1043
Eco47I	GGWCC	2 cut(s)	471, 776
Eco57I	CTGAAG	2 cut(s)	252, 485
Eco72I	CACGTG	1 cut(s)	617
Eco81I	CCTNAGG	1 cut(s)	180
EcoRII	CCWGG	3 cut(s)	306, 340, 1041
EcoT14I	CCWWGG	1 cut(s)	965
ErhI	CCWWGG	1 cut(s)	965
FaeI	CATG	6 cut(s)	38, 170, 542, 700, 794, 928
FaqI	GGGAC	1 cut(s)	500
FatI	CATG	6 cut(s)	34, 166, 538, 696, 790, 924
FauNDI	CATATG	1 cut(s)	706
Fnu4HI	GCNGC	5 cut(s)	291, 462, 681, 916, 962
FokI	GGATG	3 cut(s)	124, 453, 935
Fsp4HI	GCNGC	5 cut(s)	291, 462, 681, 916, 962
FspBI	CTAG	5 cut(s)	93, 120, 908, 966, 983
GlaI	GCGC	2 cut(s)	254, 1068
GluI	GCNGC	5 cut(s)	291, 462, 681, 916, 962
HaeII	RGCGCY	2 cut(s)	256, 1070
HaeIII	GGCC	2 cut(s)	945, 1171
HapII	CCGG	3 cut(s)	751, 942, 1168
HgaI	GACGC	1 cut(s)	650
HhaI	GCGC	2 cut(s)	255, 1069
Hin1II	CATG	6 cut(s)	38, 170, 542, 700, 794, 928
Hin6I	GCGC	2 cut(s)	253, 1067
HinP1I	GCGC	2 cut(s)	253, 1067
HincII	GTYRAC	1 cut(s)	559
HindII	GTYRAC	1 cut(s)	559
HinfI	GANTC	2 cut(s)	644, 701
HpaII	CCGG	3 cut(s)	751, 942, 1168
HphI	GGTGA	1 cut(s)	860
Hpy166II	GTNNAC	1 cut(s)	559
Hpy188I	TCNGA	4 cut(s)	232, 326, 403, 899
Hpy188III	TCNNGA	6 cut(s)	179, 413, 648, 751, 908, 1194
Hpy8I	GTNNAC	1 cut(s)	559
Hpy99I	CGWCG	1 cut(s)	288
HpyAV	CCTTC	1 cut(s)	721
HpyCH4III	ACNGT	4 cut(s)	385, 496, 563, 574
HpyCH4IV	ACGT	1 cut(s)	616
HpyCH4V	TGCA	8 cut(s)	18, 293, 428, 566, 683, 915, 1023, 1179
HpyF10VI	GCNNNNNNNGC	2 cut(s)	425, 1089
HpyF3I	CTNAG	4 cut(s)	39, 180, 956, 1143
HpySE526I	ACGT	1 cut(s)	616
Hsp92II	CATG	6 cut(s)	38, 170, 542, 700, 794, 928
HspAI	GCGC	2 cut(s)	253, 1067
Kpn2I	TCCGGA	1 cut(s)	750
KroI	GCCGGC	1 cut(s)	941
KroNI	GCCGGC	1 cut(s)	943
Kzo9I	GATC	6 cut(s)	49, 76, 130, 154, 595, 904
LmnI	GCTCC	4 cut(s)	109, 250, 826, 1131
Lsp1109I	GCAGC	5 cut(s)	277, 448, 667, 927, 948
LweI	GCATC	4 cut(s)	431, 884, 928, 1075
MaeI	CTAG	5 cut(s)	93, 120, 908, 966, 983
MaeII	ACGT	1 cut(s)	616
MalI	GATC	6 cut(s)	51, 78, 132, 156, 597, 906
MboI	GATC	6 cut(s)	49, 76, 130, 154, 595, 904
MboII	GAAGA	4 cut(s)	245, 250, 854, 914
MfeI	CAATTG	1 cut(s)	977
MflI	RGATCY	1 cut(s)	904
MlyI	GAGTC	1 cut(s)	653
MmeI	TCCRAC	1 cut(s)	228
MroI	TCCGGA	1 cut(s)	750
MroNI	GCCGGC	1 cut(s)	941
MseI	TTAA	7 cut(s)	62, 335, 395, 741, 993, 1071, 1125
MslI	CAYNNNNRTG	1 cut(s)	543
MspCI	CTTAAG	1 cut(s)	1070
MspI	CCGG	3 cut(s)	751, 942, 1168
MspR9I	CCNGG	3 cut(s)	308, 342, 1043
MunI	CAATTG	1 cut(s)	977
Mva1269I	GAATGC	3 cut(s)	428, 578, 1016
MvaI	CCWGG	3 cut(s)	308, 342, 1043
MwoI	GCNNNNNNNGC	2 cut(s)	425, 1089
NaeI	GCCGGC	1 cut(s)	943
NdeI	CATATG	1 cut(s)	706
NdeII	GATC	6 cut(s)	49, 76, 130, 154, 595, 904
NgoMIV	GCCGGC	1 cut(s)	941
NheI	GCTAGC	1 cut(s)	982
NlaIII	CATG	6 cut(s)	38, 170, 542, 700, 794, 928
NlaIV	GGNNCC	1 cut(s)	473
NspI	RCATGY	1 cut(s)	38
PctI	GAATGC	3 cut(s)	428, 578, 1016
PdiI	GCCGGC	1 cut(s)	943
PfeI	GAWTC	1 cut(s)	701
PkrI	GCNGC	5 cut(s)	292, 463, 682, 917, 963
PleI	GAGTC	1 cut(s)	652
PmaCI	CACGTG	1 cut(s)	617
PmlI	CACGTG	1 cut(s)	617
PpsI	GAGTC	1 cut(s)	652
Ppu21I	YACGTR	1 cut(s)	617
Psp6I	CCWGG	3 cut(s)	306, 340, 1041
PspCI	CACGTG	1 cut(s)	617
PspGI	CCWGG	3 cut(s)	306, 340, 1041
PspN4I	GGNNCC	1 cut(s)	473
PspPI	GGNCC	2 cut(s)	471, 776
PstI	CTGCAG	2 cut(s)	295, 1025
PsuI	RGATCY	1 cut(s)	904
RsaI	GTAC	1 cut(s)	312
RsaNI	GTAC	1 cut(s)	311
RseI	CAYNNNNRTG	1 cut(s)	543
SaqAI	TTAA	7 cut(s)	62, 335, 395, 741, 993, 1071, 1125
SatI	GCNGC	5 cut(s)	291, 462, 681, 916, 962
Sau3AI	GATC	6 cut(s)	49, 76, 130, 154, 595, 904
Sau96I	GGNCC	2 cut(s)	471, 776
SchI	GAGTC	1 cut(s)	653
ScrFI	CCNGG	3 cut(s)	308, 342, 1043
SetI	ASST	9 cut(s)	292, 312, 619, 714, 732, 781, 1136, 1178, 1188
SfaNI	GCATC	4 cut(s)	431, 884, 928, 1075
SfcI	CTRYAG	2 cut(s)	291, 1021
SinI	GGWCC	2 cut(s)	471, 776
SmiMI	CAYNNNNRTG	1 cut(s)	543
SmlI	CTYRAG	1 cut(s)	1070
SmoI	CTYRAG	1 cut(s)	1070
SsiI	CCGC	1 cut(s)	1039
SspMI	CTAG	5 cut(s)	93, 120, 908, 966, 983
StyD4I	CCNGG	3 cut(s)	306, 340, 1041
StyI	CCWWGG	1 cut(s)	965
TaaI	ACNGT	4 cut(s)	385, 496, 563, 574
TaiI	ACGT	1 cut(s)	619
TaqI	TCGA	1 cut(s)	286
TfiI	GAWTC	1 cut(s)	701
Tru1I	TTAA	7 cut(s)	62, 335, 395, 741, 993, 1071, 1125
Tru9I	TTAA	7 cut(s)	62, 335, 395, 741, 993, 1071, 1125
TscAI	CASTG	1 cut(s)	960
TseI	GCWGC	5 cut(s)	290, 461, 680, 915, 961
TspDTI	ATGAA	3 cut(s)	290, 533, 941
TspGWI	ACGGA	2 cut(s)	328, 377
TspRI	CASTG	1 cut(s)	960
Vha464I	CTTAAG	1 cut(s)	1070
VpaK11BI	GGWCC	2 cut(s)	471, 776
XapI	RAATTY	4 cut(s)	189, 851, 931, 1075
XbaI	TCTAGA	1 cut(s)	907
XceI	RCATGY	1 cut(s)	38
XcmI	CCANNNNNNNNNTGG	2 cut(s)	791, 1060
XmaJI	CCTAGG	1 cut(s)	965
XspI	CTAG	5 cut(s)	93, 120, 908, 966, 983

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.