Rmu_sc0000408.1_g000001

Cotranslationally removes the N-terminal methionine from nascent proteins. The N-terminal methionine is often cleaved when the second residue in the primary sequence is small and uncharged (Met-Ala-, Cys, Gly, Pro, Ser, Thr, or Val)

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000408.1
Physical Location & Seq
Forward (+)
1 .. 737
737 bp
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UTR
Exon/CDS
Intron
Rmu_sc0000408.1_g000001.1.cds

Sequence Viewer

Length: 436 bp
tgaagagaagagggagttggagcgccttgaaaaaccattatataattcagttcgtcgagctgcagaagttcatcgccaggtacggaaatacatcagagggattttaaagcctggaatgttgatgactgatttgtgtgagactttggagaacacagtccgtaagttaatatccgagaatggtctggaagcaggcattgcattccccacaggatgctctttgaattgggttgctgctcattggaccccaaatacaggggacaagacggtgcttcagtatgatgatgtgatgaaattagactttggaactcatgttgatggtcatatagttgactgtgcatttacagtagcattcaatcctatgtttgatccactacttgaagcctcacgtgaagcaacaaatacgggtatcaaggtactcttacctcctcagtattaa

Protein Analysis

144

Amino Acids

16.29

Weight (kDa)

5.81

Isoelectric Point (pI)

14.96

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AclWI GGATC 1 cut(s) 360
AcuI CTGAAG 1 cut(s) 255
AcvI CACGTG 1 cut(s) 387
AfaI GTAC 2 cut(s) 82, 415
AfiI CCNNNNNNNGG 1 cut(s) 252
AgsI TTSAA 4 cut(s) 30, 221, 353, 378
AjnI CCWGG 2 cut(s) 76, 110
AjuI GAANNNNNNNTTGG 1 cut(s) 32
AluBI AGCT 1 cut(s) 60
AluI AGCT 1 cut(s) 60
Alw26I GTCTC 1 cut(s) 132
AlwI GGATC 1 cut(s) 360
ApeKI GCWGC 2 cut(s) 60, 231
AspLEI GCGC 1 cut(s) 25
AspS9I GGNCC 1 cut(s) 241
AvaII GGWCC 1 cut(s) 241
BbrPI CACGTG 1 cut(s) 387
BbvI GCAGC 2 cut(s) 47, 218
BccI CCATC 1 cut(s) 309
BciT130I CCWGG 2 cut(s) 78, 112
BcoDI GTCTC 1 cut(s) 132
BfmI CTRYAG 1 cut(s) 61
BfoI RGCGCY 1 cut(s) 26
BisI GCNGC 2 cut(s) 61, 232
BlsI GCNGC 2 cut(s) 62, 233
Bme1390I CCNGG 2 cut(s) 78, 112
Bme18I GGWCC 1 cut(s) 241
BmgT120I GGNCC 1 cut(s) 241
BmiI GGNNCC 1 cut(s) 243
BmrFI CCNGG 2 cut(s) 78, 112
BmsI GCATC 1 cut(s) 201
BsaAI YACGTR 1 cut(s) 387
Bsc4I CCNNNNNNNGG 1 cut(s) 252
Bse3DI GCAATG 1 cut(s) 193
BseBI CCWGG 2 cut(s) 78, 112
BseGI GGATG 1 cut(s) 216
BseLI CCNNNNNNNGG 1 cut(s) 252
BseMI GCAATG 1 cut(s) 193
BseRI GAGGAG 1 cut(s) 415
BseXI GCAGC 2 cut(s) 47, 218
BslFI GGGAC 1 cut(s) 270
BslI CCNNNNNNNGG 1 cut(s) 252
BsmAI GTCTC 1 cut(s) 132
BsmFI GGGAC 1 cut(s) 270
BsmI GAATGC 2 cut(s) 198, 348
Bsp143I GATC 1 cut(s) 365
BspLI GGNNCC 1 cut(s) 243
BspMAI CTGCAG 1 cut(s) 65
BspPI GGATC 1 cut(s) 360
BsrDI GCAATG 1 cut(s) 193
BssMI GATC 1 cut(s) 365
Bst2UI CCWGG 2 cut(s) 78, 112
Bst4CI ACNGT 4 cut(s) 155, 266, 333, 344
Bst6I CTCTTC 1 cut(s) 3
BstAPI GCANNNNNTGC 1 cut(s) 195
BstBAI YACGTR 1 cut(s) 387
BstC8I GCNNGC 1 cut(s) 191
BstDEI CTNAG 1 cut(s) 427
BstF5I GGATG 1 cut(s) 216
BstH2I RGCGCY 1 cut(s) 26
BstHHI GCGC 1 cut(s) 25
BstKTI GATC 1 cut(s) 368
BstMAI GTCTC 1 cut(s) 132
BstMBI GATC 1 cut(s) 365
BstMWI GCNNNNNNNGC 1 cut(s) 195
BstNI CCWGG 2 cut(s) 78, 112
BstSCI CCNGG 2 cut(s) 76, 110
BstSFI CTRYAG 1 cut(s) 61
BstV1I GCAGC 2 cut(s) 47, 218
BtgZI GCGATG 1 cut(s) 57
BtsCI GGATG 1 cut(s) 216
Cac8I GCNNGC 1 cut(s) 191
CfoI GCGC 1 cut(s) 25
Cfr13I GGNCC 1 cut(s) 241
Csp6I GTAC 2 cut(s) 81, 414
CviAII CATG 1 cut(s) 309
CviJI RGCY 3 cut(s) 60, 110, 381
CviKI_1 RGCY 3 cut(s) 60, 110, 381
CviQI GTAC 2 cut(s) 81, 414
DdeI CTNAG 1 cut(s) 427
DpnI GATC 1 cut(s) 367
DpnII GATC 1 cut(s) 365
DraI TTTAAA 1 cut(s) 106
Eam1104I CTCTTC 1 cut(s) 3
EarI CTCTTC 1 cut(s) 3
Eco47I GGWCC 1 cut(s) 241
Eco57I CTGAAG 1 cut(s) 255
Eco72I CACGTG 1 cut(s) 387
EcoRII CCWGG 2 cut(s) 76, 110
FaeI CATG 1 cut(s) 312
FaiI YATR 7 cut(s) 41, 43, 277, 310, 322, 324, 360
FalI AAGNNNNNCTT 2 cut(s) 402, 434
FaqI GGGAC 1 cut(s) 270
FatI CATG 1 cut(s) 308
Fnu4HI GCNGC 2 cut(s) 61, 232
FokI GGATG 1 cut(s) 223
Fsp4HI GCNGC 2 cut(s) 61, 232
GlaI GCGC 1 cut(s) 24
GluI GCNGC 2 cut(s) 61, 232
HaeII RGCGCY 1 cut(s) 26
HhaI GCGC 1 cut(s) 25
Hin1II CATG 1 cut(s) 312
Hin6I GCGC 1 cut(s) 23
HinP1I GCGC 1 cut(s) 23
HincII GTYRAC 1 cut(s) 329
HindII GTYRAC 1 cut(s) 329
Hpy166II GTNNAC 1 cut(s) 329
Hpy188I TCNGA 2 cut(s) 96, 173
Hpy188III TCNNGA 1 cut(s) 183
Hpy8I GTNNAC 1 cut(s) 329
Hpy99I CGWCG 1 cut(s) 58
HpyCH4III ACNGT 4 cut(s) 155, 266, 333, 344
HpyCH4IV ACGT 1 cut(s) 386
HpyCH4V TGCA 3 cut(s) 63, 198, 336
HpyF10VI GCNNNNNNNGC 1 cut(s) 195
HpyF3I CTNAG 1 cut(s) 427
HpySE526I ACGT 1 cut(s) 386
Hsp92II CATG 1 cut(s) 312
HspAI GCGC 1 cut(s) 23
Kzo9I GATC 1 cut(s) 365
LmnI GCTCC 1 cut(s) 20
LpnPI CCDG 8 cut(s) 63, 90, 97, 124, 168, 175, 193, 238
Lsp1109I GCAGC 2 cut(s) 47, 218
LweI GCATC 1 cut(s) 201
MaeII ACGT 1 cut(s) 386
MalI GATC 1 cut(s) 367
MboI GATC 1 cut(s) 365
MboII GAAGA 2 cut(s) 15, 20
MluCI AATT 3 cut(s) 44, 221, 291
MnlI CCTC 5 cut(s) 4, 90, 392, 433, 436
MseI TTAA 3 cut(s) 105, 165, 434
MslI CAYNNNNRTG 1 cut(s) 313
MspR9I CCNGG 2 cut(s) 78, 112
Mva1269I GAATGC 2 cut(s) 198, 348
MvaI CCWGG 2 cut(s) 78, 112
MwoI GCNNNNNNNGC 1 cut(s) 195
NdeII GATC 1 cut(s) 365
NlaIII CATG 1 cut(s) 312
NlaIV GGNNCC 1 cut(s) 243
PctI GAATGC 2 cut(s) 198, 348
PkrI GCNGC 2 cut(s) 62, 233
PmaCI CACGTG 1 cut(s) 387
PmlI CACGTG 1 cut(s) 387
Ppu21I YACGTR 1 cut(s) 387
Psp6I CCWGG 2 cut(s) 76, 110
PspCI CACGTG 1 cut(s) 387
PspGI CCWGG 2 cut(s) 76, 110
PspN4I GGNNCC 1 cut(s) 243
PspPI GGNCC 1 cut(s) 241
PstI CTGCAG 1 cut(s) 65
RsaI GTAC 2 cut(s) 82, 415
RsaNI GTAC 2 cut(s) 81, 414
RseI CAYNNNNRTG 1 cut(s) 313
SaqAI TTAA 3 cut(s) 105, 165, 434
SatI GCNGC 2 cut(s) 61, 232
Sau3AI GATC 1 cut(s) 365
Sau96I GGNCC 1 cut(s) 241
ScrFI CCNGG 2 cut(s) 78, 112
SetI ASST 5 cut(s) 62, 82, 389, 415, 425
SfaNI GCATC 1 cut(s) 201
SfcI CTRYAG 1 cut(s) 61
SinI GGWCC 1 cut(s) 241
SmiMI CAYNNNNRTG 1 cut(s) 313
Sse9I AATT 3 cut(s) 44, 221, 291
StyD4I CCNGG 2 cut(s) 76, 110
TaaI ACNGT 4 cut(s) 155, 266, 333, 344
TaiI ACGT 1 cut(s) 389
TaqI TCGA 1 cut(s) 56
TasI AATT 3 cut(s) 44, 221, 291
Tru1I TTAA 3 cut(s) 105, 165, 434
Tru9I TTAA 3 cut(s) 105, 165, 434
TseI GCWGC 2 cut(s) 60, 231
TspDTI ATGAA 2 cut(s) 60, 303
TspGWI ACGGA 2 cut(s) 98, 147
VpaK11BI GGWCC 1 cut(s) 241
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.