Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

18974367 .. 18979061

Gene Structure 4695 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46200.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

ATGAATCCGGCGAATTTTCAGCCTCCAAATCCTCCGTTCCACTGGGCTCCGATGTTACCTCCAGACCCGCCTCGTTGTGGTATGTTTTGGAATACAAAGAACATAACCGATCAGCTTAAACAACTTCAAGATACGCTTAACCTGGCTAAATCAATGGAGAAAGAACTGGAAGCATTGAAGATGATCAAAGACGCCAAAGGTTCTGTGGAAAATGCAGTACAAGATTCGGGAGTAGAGTATTTAGAGGCTAGAAAGATGGATTTGGGACAGCAGGAAATGCTTTCAGTGGATGCTGCTAACTCCTTGATGTCTACCTTGAGAGCACAGCTTGAGCCTTTTAGGTTCGTTGTTGATGAGAATAGTCCATGGGAAGAGAAATCTGCAGCAGTAAGATTGACTTGCAAAATGAAGAAATCAATAAGGAACAAACTGTGGAAGAAACGAAAGAGACGGTGTGCTGCAGAGATGCGTGCTAAGGAGCCTGAAAGATTTGAACAAGCTGATCGAGAGGCAGATGAATGGAGGGAAAAGGAAATGGCCAAGGACATGGCAAATAGAAAGGTTGATGAGATGAAGGCAATTGAGAAGATCAAGGCAAAACGTGAGCGAAAGAGACTAGAACCCGAGCTTGAACTAGCTCTGATTGTTGAGGAAATGCAAGAGTTACGTTCCCTAAGAATTGAAAAACTAAAGAAGCAAGGACATTTCCTTCCCGAAGAAGATGACAAGTTTTTCGAGAGTGTTCGTGCTGCAGTGGAGCAAGAGGAAAACCAAGCTCAGTCCCTAATCAACACAGAGACCGAAGAGCATGTCATTGCCTCTGAGGAGAACACTACTCTCACTACCAGTAACAAAACCAACAACGACACAGATAAAGATAGCAATACTAATGCAGCTTCTTGTGAAAGGACTATGAAAGCTCCTGACAATGGTTGCGACAATATATCGAATTTACCAGTCGAGGTCTATCACTACTACTACGGAAGTAATATCGACATGGGTAGACTTATTGAGATCAGAAGAGAATGGGATGCATATCTGAGTGCCGGAGGAAGCCGGATTCCTGGACACTGGGTCCAGCCGTCGCCACCAGCTAATGAGATTTGGGCTTCTTGTCTTGTTAATACTCCCAAAAGAGATCTTAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

382

Amino Acids

44.03

Weight (kDa)

5.51

Isoelectric Point (pI)

57.81

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	129 - 349	1.6e-08	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	2 cut(s)	311, 1003
AciI	CCGC	1 cut(s)	68
AcoI	YGGCCR	1 cut(s)	537
AcsI	RAATTY	2 cut(s)	13, 949
AcyI	GRCGYC	1 cut(s)	192
AfaI	GTAC	1 cut(s)	219
AfiI	CCNNNNNNNGG	2 cut(s)	77, 929
AgsI	TTSAA	5 cut(s)	128, 178, 494, 632, 683
AhdI	GACNNNNNGTC	1 cut(s)	1073
AjnI	CCWGG	2 cut(s)	141, 1063
AluBI	AGCT	9 cut(s)	115, 328, 500, 628, 638, 776, 896, 920, 1094
AluI	AGCT	9 cut(s)	115, 328, 500, 628, 638, 776, 896, 920, 1094
Alw21I	GWGCWC	1 cut(s)	325
Alw26I	GTCTC	3 cut(s)	442, 607, 791
Ama87I	CYCGRG	1 cut(s)	623
AoxI	GGCC	1 cut(s)	537
ApeKI	GCWGC	5 cut(s)	293, 383, 458, 749, 893
ApoI	RAATTY	2 cut(s)	13, 949
ArsI	GACNNNNNNTTYG	4 cut(s)	716, 748, 795, 827
AspS9I	GGNCC	1 cut(s)	1075
AvaI	CYCGRG	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	1075
BalI	TGGCCA	1 cut(s)	539
BanII	GRGCYC	1 cut(s)	49
Bbv12I	GWGCWC	1 cut(s)	325
BbvI	GCAGC	5 cut(s)	280, 395, 445, 736, 905
BccI	CCATC	1 cut(s)	250
BceAI	ACGGC	1 cut(s)	1066
BciT130I	CCWGG	2 cut(s)	143, 1065
BclI	TGATCA	1 cut(s)	183
BcoDI	GTCTC	3 cut(s)	442, 607, 791
BfaI	CTAG	3 cut(s)	249, 617, 635
BfmI	CTRYAG	3 cut(s)	381, 459, 750
BglII	AGATCT	1 cut(s)	1138
BisI	GCNGC	5 cut(s)	294, 384, 459, 750, 894
BlsI	GCNGC	5 cut(s)	295, 385, 460, 751, 895
Bme1390I	CCNGG	2 cut(s)	143, 1065
Bme18I	GGWCC	1 cut(s)	1075
BmeRI	GACNNNNNGTC	1 cut(s)	1073
BmeT110I	CYCGRG	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	1075
BmiI	GGNNCC	3 cut(s)	48, 480, 1076
BmrFI	CCNGG	2 cut(s)	143, 1065
BmrI	ACTGGG	2 cut(s)	52, 1081
BmsI	GCATC	3 cut(s)	280, 456, 1021
BmuI	ACTGGG	2 cut(s)	52, 1081
BpmI	CTGGAG	1 cut(s)	45
Bpu10I	CCTNAGC	1 cut(s)	474
BpuEI	CTTGAG	2 cut(s)	337, 350
BsaBI	GATNNNNATC	1 cut(s)	1035
BsaHI	GRCGYC	1 cut(s)	192
BsaI	GGTCTC	1 cut(s)	791
BsaJI	CCNNGG	2 cut(s)	365, 540
Bsc4I	CCNNNNNNNGG	2 cut(s)	77, 929
Bse1I	ACTGG	5 cut(s)	47, 171, 846, 956, 1076
Bse3DI	GCAATG	1 cut(s)	813
Bse8I	GATNNNNATC	1 cut(s)	1035
BseBI	CCWGG	2 cut(s)	143, 1065
BseDI	CCNNGG	2 cut(s)	365, 540
BseGI	GGATG	2 cut(s)	295, 1036
BseJI	GATNNNNATC	1 cut(s)	1035
BseLI	CCNNNNNNNGG	2 cut(s)	77, 929
BseMI	GCAATG	1 cut(s)	813
BseMII	CTCAG	3 cut(s)	791, 813, 1031
BseNI	ACTGG	5 cut(s)	47, 171, 846, 956, 1076
BseRI	GAGGAG	1 cut(s)	839
BseXI	GCAGC	5 cut(s)	280, 395, 445, 736, 905
BshFI	GGCC	1 cut(s)	539
BsiHKAI	GWGCWC	1 cut(s)	325
BsiHKCI	CYCGRG	1 cut(s)	623
BsiSI	CCGG	3 cut(s)	8, 1047, 1057
BslFI	GGGAC	2 cut(s)	279, 766
BslI	CCNNNNNNNGG	2 cut(s)	77, 929
BsmAI	GTCTC	3 cut(s)	442, 607, 791
BsmBI	CGTCTC	1 cut(s)	442
BsmFI	GGGAC	2 cut(s)	279, 766
BsnI	GGCC	1 cut(s)	539
Bso31I	GGTCTC	1 cut(s)	791
BsoBI	CYCGRG	1 cut(s)	623
Bsp1286I	GDGCHC	2 cut(s)	49, 325
Bsp143I	GATC	6 cut(s)	109, 183, 502, 588, 1014, 1138
Bsp19I	CCATGG	1 cut(s)	365
BspACI	CCGC	1 cut(s)	68
BspANI	GGCC	1 cut(s)	539
BspCNI	CTCAG	3 cut(s)	790, 814, 1032
BspLI	GGNNCC	3 cut(s)	48, 480, 1076
BspMAI	CTGCAG	3 cut(s)	385, 463, 754
BspQI	GCTCTTC	1 cut(s)	798
BspTNI	GGTCTC	1 cut(s)	791
BsrDI	GCAATG	1 cut(s)	813
BsrI	ACTGG	5 cut(s)	47, 171, 846, 956, 1076
BssECI	CCNNGG	2 cut(s)	365, 540
BssMI	GATC	6 cut(s)	109, 183, 502, 588, 1014, 1138
BssNI	GRCGYC	1 cut(s)	192
BssT1I	CCWWGG	2 cut(s)	365, 540
Bst2UI	CCWGG	2 cut(s)	143, 1065
Bst4CI	ACNGT	2 cut(s)	432, 453
Bst6I	CTCTTC	3 cut(s)	366, 798, 1015
BstACI	GRCGYC	1 cut(s)	192
BstAPI	GCANNNNNTGC	1 cut(s)	277
BstC8I	GCNNGC	1 cut(s)	471
BstDEI	CTNAG	6 cut(s)	474, 674, 777, 822, 1040, 1142
BstDSI	CCRYGG	1 cut(s)	365
BstF5I	GGATG	2 cut(s)	295, 1036
BstKTI	GATC	6 cut(s)	112, 186, 505, 591, 1017, 1141
BstMAI	GTCTC	3 cut(s)	442, 607, 791
BstMBI	GATC	6 cut(s)	109, 183, 502, 588, 1014, 1138
BstMWI	GCNNNNNNNGC	1 cut(s)	277
BstNI	CCWGG	2 cut(s)	143, 1065
BstNSI	RCATGY	1 cut(s)	812
BstSCI	CCNGG	2 cut(s)	141, 1063
BstSFI	CTRYAG	3 cut(s)	381, 459, 750
BstV1I	GCAGC	5 cut(s)	280, 395, 445, 736, 905
BstX2I	RGATCY	1 cut(s)	1138
BstXI	CCANNNNNNTGG	1 cut(s)	547
BstYI	RGATCY	1 cut(s)	1138
BsuRI	GGCC	1 cut(s)	539
BtgI	CCRYGG	1 cut(s)	365
BtsCI	GGATG	2 cut(s)	295, 1036
BtsI	GCAGTG	1 cut(s)	759
BtsIMutI	CAGTG	4 cut(s)	40, 291, 759, 1069
Cac8I	GCNNGC	1 cut(s)	471
Cfr13I	GGNCC	1 cut(s)	1075
CseI	GACGC	1 cut(s)	200
Csp6I	GTAC	1 cut(s)	218
CviAII	CATG	4 cut(s)	366, 547, 809, 997
CviQI	GTAC	1 cut(s)	218
DdeI	CTNAG	6 cut(s)	474, 674, 777, 822, 1040, 1142
DpnI	GATC	6 cut(s)	111, 185, 504, 590, 1016, 1140
DpnII	GATC	6 cut(s)	109, 183, 502, 588, 1014, 1138
DriI	GACNNNNNGTC	1 cut(s)	1073
EaeI	YGGCCR	1 cut(s)	537
Eam1104I	CTCTTC	3 cut(s)	366, 798, 1015
Eam1105I	GACNNNNNGTC	1 cut(s)	1073
EarI	CTCTTC	3 cut(s)	366, 798, 1015
Eco130I	CCWWGG	2 cut(s)	365, 540
Eco24I	GRGCYC	1 cut(s)	49
Eco31I	GGTCTC	1 cut(s)	791
Eco47I	GGWCC	1 cut(s)	1075
Eco88I	CYCGRG	1 cut(s)	623
EcoRII	CCWGG	2 cut(s)	141, 1063
EcoT14I	CCWWGG	2 cut(s)	365, 540
EcoT22I	ATGCAT	1 cut(s)	1036
EcoT38I	GRGCYC	1 cut(s)	49
ErhI	CCWWGG	2 cut(s)	365, 540
Esp3I	CGTCTC	1 cut(s)	442
FaeI	CATG	4 cut(s)	369, 550, 812, 1000
FaiI	YATR	9 cut(s)	83, 104, 367, 548, 810, 914, 944, 998, 1036
FalI	AAGNNNNNCTT	4 cut(s)	120, 152, 382, 414
FaqI	GGGAC	2 cut(s)	279, 766
FatI	CATG	4 cut(s)	365, 546, 808, 996
FauI	CCCGC	1 cut(s)	75
FbaI	TGATCA	1 cut(s)	183
FblI	GTMKAC	2 cut(s)	311, 1003
Fnu4HI	GCNGC	5 cut(s)	294, 384, 459, 750, 894
FokI	GGATG	2 cut(s)	302, 1043
FriOI	GRGCYC	1 cut(s)	49
Fsp4HI	GCNGC	5 cut(s)	294, 384, 459, 750, 894
FspBI	CTAG	3 cut(s)	249, 617, 635
GluI	GCNGC	5 cut(s)	294, 384, 459, 750, 894
GsuI	CTGGAG	1 cut(s)	45
HaeIII	GGCC	1 cut(s)	539
HapII	CCGG	3 cut(s)	8, 1047, 1057
HgaI	GACGC	1 cut(s)	200
Hin1I	GRCGYC	1 cut(s)	192
Hin1II	CATG	4 cut(s)	369, 550, 812, 1000
HinfI	GANTC	3 cut(s)	4, 224, 1060
HpaII	CCGG	3 cut(s)	8, 1047, 1057
Hpy166II	GTNNAC	2 cut(s)	312, 1004
Hpy188I	TCNGA	5 cut(s)	51, 642, 823, 1019, 1041
Hpy188III	TCNNGA	7 cut(s)	62, 128, 228, 506, 713, 736, 923
Hpy8I	GTNNAC	2 cut(s)	312, 1004
Hpy99I	CGWCG	1 cut(s)	1087
HpyAV	CCTTC	2 cut(s)	568, 719
HpyCH4III	ACNGT	2 cut(s)	432, 453
HpyCH4IV	ACGT	2 cut(s)	601, 667
HpyCH4V	TGCA	8 cut(s)	215, 383, 402, 461, 658, 752, 893, 1034
HpyF10VI	GCNNNNNNNGC	1 cut(s)	277
HpyF3I	CTNAG	6 cut(s)	474, 674, 777, 822, 1040, 1142
HpySE526I	ACGT	2 cut(s)	601, 667
Hsp92I	GRCGYC	1 cut(s)	192
Hsp92II	CATG	4 cut(s)	369, 550, 812, 1000
Ksp22I	TGATCA	1 cut(s)	183
Kzo9I	GATC	6 cut(s)	109, 183, 502, 588, 1014, 1138
LguI	GCTCTTC	1 cut(s)	798
LmnI	GCTCC	4 cut(s)	52, 478, 757, 925
Lsp1109I	GCAGC	5 cut(s)	280, 395, 445, 736, 905
LweI	GCATC	3 cut(s)	280, 456, 1021
MaeI	CTAG	3 cut(s)	249, 617, 635
MaeII	ACGT	2 cut(s)	601, 667
MaeIII	GTNAC	3 cut(s)	54, 663, 848
MalI	GATC	6 cut(s)	111, 185, 504, 590, 1016, 1140
MboI	GATC	6 cut(s)	109, 183, 502, 588, 1014, 1138
MboII	GAAGA	9 cut(s)	190, 383, 421, 448, 598, 728, 731, 815, 1032
MfeI	CAATTG	1 cut(s)	579
MflI	RGATCY	1 cut(s)	1138
MhlI	GDGCHC	2 cut(s)	49, 325
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	4 cut(s)	13, 579, 678, 949
MluNI	TGGCCA	1 cut(s)	539
Mox20I	TGGCCA	1 cut(s)	539
Mph1103I	ATGCAT	1 cut(s)	1036
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	3 cut(s)	117, 138, 1122
Msp20I	TGGCCA	1 cut(s)	539
MspI	CCGG	3 cut(s)	8, 1047, 1057
MspR9I	CCNGG	2 cut(s)	143, 1065
MunI	CAATTG	1 cut(s)	579
MvaI	CCWGG	2 cut(s)	143, 1065
MwoI	GCNNNNNNNGC	1 cut(s)	277
NcoI	CCATGG	1 cut(s)	365
NdeII	GATC	6 cut(s)	109, 183, 502, 588, 1014, 1138
NlaIII	CATG	4 cut(s)	369, 550, 812, 1000
NlaIV	GGNNCC	3 cut(s)	48, 480, 1076
NsiI	ATGCAT	1 cut(s)	1036
NspI	RCATGY	1 cut(s)	812
PciSI	GCTCTTC	1 cut(s)	798
PfeI	GAWTC	3 cut(s)	4, 224, 1060
PfoI	TCCNGGA	1 cut(s)	1063
PkrI	GCNGC	5 cut(s)	295, 385, 460, 751, 895
Psp6I	CCWGG	2 cut(s)	141, 1063
PspGI	CCWGG	2 cut(s)	141, 1063
PspN4I	GGNNCC	3 cut(s)	48, 480, 1076
PspPI	GGNCC	1 cut(s)	1075
PstI	CTGCAG	3 cut(s)	385, 463, 754
PsuI	RGATCY	1 cut(s)	1138
RsaI	GTAC	1 cut(s)	219
RsaNI	GTAC	1 cut(s)	218
SapI	GCTCTTC	1 cut(s)	798
SaqAI	TTAA	3 cut(s)	117, 138, 1122
SatI	GCNGC	5 cut(s)	294, 384, 459, 750, 894
Sau3AI	GATC	6 cut(s)	109, 183, 502, 588, 1014, 1138
Sau96I	GGNCC	1 cut(s)	1075
ScrFI	CCNGG	2 cut(s)	143, 1065
SduI	GDGCHC	2 cut(s)	49, 325
SfaNI	GCATC	3 cut(s)	280, 456, 1021
SfcI	CTRYAG	3 cut(s)	381, 459, 750
SinI	GGWCC	1 cut(s)	1075
SmlI	CTYRAG	2 cut(s)	316, 329
SmoI	CTYRAG	2 cut(s)	316, 329
Sse9I	AATT	4 cut(s)	13, 579, 678, 949
SsiI	CCGC	1 cut(s)	68
SspMI	CTAG	3 cut(s)	249, 617, 635
StyD4I	CCNGG	2 cut(s)	141, 1063
StyI	CCWWGG	2 cut(s)	365, 540
TaaI	ACNGT	2 cut(s)	432, 453
TaiI	ACGT	2 cut(s)	604, 670
TaqI	TCGA	5 cut(s)	505, 735, 947, 960, 993
TaqII	GACCGA	1 cut(s)	815
TasI	AATT	4 cut(s)	13, 579, 678, 949
TatI	WGTACW	1 cut(s)	217
TfiI	GAWTC	3 cut(s)	4, 224, 1060
Tru1I	TTAA	3 cut(s)	117, 138, 1122
Tru9I	TTAA	3 cut(s)	117, 138, 1122
TscAI	CASTG	4 cut(s)	47, 291, 759, 1076
TseI	GCWGC	5 cut(s)	293, 383, 458, 749, 893
TspDTI	ATGAA	5 cut(s)	17, 422, 531, 587, 929
TspGWI	ACGGA	2 cut(s)	24, 996
TspRI	CASTG	4 cut(s)	47, 291, 759, 1076
VpaK11BI	GGWCC	1 cut(s)	1075
XapI	RAATTY	2 cut(s)	13, 949
XceI	RCATGY	1 cut(s)	812
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XmiI	GTMKAC	2 cut(s)	311, 1003
XspI	CTAG	3 cut(s)	249, 617, 635
Zsp2I	ATGCAT	1 cut(s)	1036

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.