Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Forward (+)

14034273 .. 14036511

Gene Structure 2239 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g12710.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1212 bp

ATGAACCCAATTCCGTACCAACCACAGGCGCCCCGCCCTCCGTGGCCTCCTGTGGTGCCGCCCAACCCGCCAATGTCGAGCTCCTTCTGGGAAACCACAAACGTCCGTGATCGGCTCAAGAACTTGCAGGACACTCTGAGTCTCGCAAAAGCAATGCAGAAAGAGCTTCAGATGCTGCAATTGATCAAAGATGGTAAAGGGTCCGACGATGGTGAAGCTTCCGTTGGTGGGTTTTCGGAGTATTTGAAAGAAAGGAGGGTAAATGTGGAGTCTCAAGTGTCGCTCTCAGTGGAAGCTGCGAATGCTTTGATGGCGAAACTGCAAGTTGAGCTGGAACCGTTTAGAATGATCACACATGAAATGTGTCCGTGGGAGGAGAAGTCTGCGGTGGTGCGGTTAGCGAATAAGATGCACAAGACGAAGAGGAATAAACGGTGGAGGAAAGCGAAGAGGAAGCACATTGCGGAAATGATTGCGGAGGAGCGTGAGAGGTTCGAGGAAGCTGATCGAGAAGCTGATGAGTGGAGAGCTAGGGAAATTGCCAAAGATATTGCCAAACGCAAGATGGAGGATATGAAGAAAATTGCAAAGCTTAAAGCAAAAGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACGGTATTGATTGTAGAGAAATTGCAACAGTTGCGTTCCATCAGGATCGAAAAATTGAAGAAACAAGGTCATTTTCTCCCAGAGGAGGATGATAAATTTCTTGAAAAAGTACGGGCTGCAGTTGAAGAAGAGGAGCAACAAGTTATCTTGGCAGCTGATATGGACGCTGCTAAGGATGCCATAGCAACTGTTGAGCAGTCCAGGAAAATAACTGAGAATGTCAGACCTGACTCCAAGGATGAAAGCAGCGATAGAGACGAGACAAAGGAGAGTAAAGACCAGACAACTCCAAGCACTAATGCAGGGACCTCTACTTCAGTCACTAACAAGGATTACGGGAAACAAGTTTCACAGGGAGAAGGACATAGCGGAGCTTATGATGCTGTGGCAAACTTACCTATTGAATTTTATCACTACTATCATGGCAGCAACACCGATATGGGCACGCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCGCATACCCGGACATTGGGTTCAACCCCCGCCACCTGCAGATGATATATGGGCATCCTACCTGGTGCAGCCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

404

Amino Acids

46.17

Weight (kDa)

6.52

Isoelectric Point (pI)

59.31

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	1177
Acc36I	ACCTGC	1 cut(s)	1177
AccB1I	GGYRCC	2 cut(s)	28, 55
AclWI	GGATC	1 cut(s)	689
AcsI	RAATTY	2 cut(s)	731, 1040
AcuI	CTGAAG	2 cut(s)	152, 936
AcyI	GRCGYC	1 cut(s)	29
AfaI	GTAC	2 cut(s)	17, 747
AfiI	CCNNNNNNNGG	4 cut(s)	25, 228, 721, 1149
AgsI	TTSAA	6 cut(s)	247, 694, 740, 761, 1040, 1157
AjnI	CCWGG	3 cut(s)	836, 1123, 1194
AjuI	GAANNNNNNNTTGG	2 cut(s)	207, 239
AloI	GAACNNNNNNTCC	2 cut(s)	1137, 1169
Alw21I	GWGCWC	1 cut(s)	83
Alw26I	GTCTC	6 cut(s)	146, 276, 610, 629, 885, 890
AlwI	GGATC	1 cut(s)	689
AlwNI	CAGNNNCTG	1 cut(s)	175
AoxI	GGCC	1 cut(s)	44
ApeKI	GCWGC	8 cut(s)	175, 296, 752, 788, 803, 882, 1062, 1201
ApoI	RAATTY	2 cut(s)	731, 1040
AspLEI	GCGC	1 cut(s)	31
AspS9I	GGNCC	2 cut(s)	201, 942
AsuC2I	CCSGG	1 cut(s)	1143
AsuHPI	GGTGA	2 cut(s)	224, 1105
AvaII	GGWCC	2 cut(s)	201, 942
BaeGI	GKGCMC	1 cut(s)	1082
BanI	GGYRCC	2 cut(s)	28, 55
BanII	GRGCYC	1 cut(s)	83
Bbv12I	GWGCWC	1 cut(s)	83
BbvI	GCAGC	7 cut(s)	162, 283, 739, 790, 800, 894, 1074
BccI	CCATC	5 cut(s)	185, 203, 304, 559, 683
BcgI	CGANNNNNNTGC	2 cut(s)	391, 425
BciT130I	CCWGG	3 cut(s)	838, 1125, 1196
BclI	TGATCA	2 cut(s)	183, 348
BcnI	CCSGG	1 cut(s)	1143
BcoDI	GTCTC	6 cut(s)	146, 276, 610, 629, 885, 890
BfaI	CTAG	2 cut(s)	531, 620
BfmI	CTRYAG	2 cut(s)	753, 1170
BfoI	RGCGCY	1 cut(s)	32
BfuAI	ACCTGC	1 cut(s)	1177
Bme1390I	CCNGG	4 cut(s)	838, 1125, 1143, 1196
Bme18I	GGWCC	2 cut(s)	201, 942
BmgT120I	GGNCC	2 cut(s)	201, 942
BmiI	GGNNCC	5 cut(s)	30, 57, 202, 336, 943
BmrFI	CCNGG	4 cut(s)	838, 1125, 1143, 1196
BmsI	GCATC	6 cut(s)	162, 399, 802, 1006, 1099, 1196
Bpu10I	CCTNAGC	1 cut(s)	807
BpuEI	CTTGAG	3 cut(s)	101, 258, 653
BpuMI	CCSGG	1 cut(s)	1143
BsaHI	GRCGYC	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	41, 368, 870
BsaXI	ACNNNNNCTCC	2 cut(s)	365, 395
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 228, 721, 1149
Bse3DI	GCAATG	2 cut(s)	159, 459
BseBI	CCWGG	3 cut(s)	838, 1125, 1196
BseDI	CCNNGG	3 cut(s)	41, 368, 870
BseGI	GGATG	5 cut(s)	730, 817, 880, 1114, 1187
BseLI	CCNNNNNNNGG	4 cut(s)	25, 228, 721, 1149
BseMI	GCAATG	2 cut(s)	159, 459
BseMII	CTCAG	3 cut(s)	128, 300, 840
BseRI	GAGGAG	4 cut(s)	389, 494, 734, 782
BseSI	GKGCMC	1 cut(s)	1082
BseXI	GCAGC	7 cut(s)	162, 283, 739, 790, 800, 894, 1074
BshFI	GGCC	1 cut(s)	46
BshNI	GGYRCC	2 cut(s)	28, 55
BsiHKAI	GWGCWC	1 cut(s)	83
BsiSI	CCGG	1 cut(s)	1143
BslFI	GGGAC	1 cut(s)	955
BslI	CCNNNNNNNGG	4 cut(s)	25, 228, 721, 1149
BsmAI	GTCTC	6 cut(s)	146, 276, 610, 629, 885, 890
BsmBI	CGTCTC	2 cut(s)	629, 885
BsmFI	GGGAC	1 cut(s)	955
BsmI	GAATGC	1 cut(s)	307
BsnI	GGCC	1 cut(s)	46
Bsp1286I	GDGCHC	2 cut(s)	83, 1082
Bsp143I	GATC	5 cut(s)	109, 183, 348, 505, 681
BspANI	GGCC	1 cut(s)	46
BspCNI	CTCAG	3 cut(s)	129, 299, 841
BspLI	GGNNCC	5 cut(s)	30, 57, 202, 336, 943
BspMAI	CTGCAG	2 cut(s)	757, 1174
BspMI	ACCTGC	1 cut(s)	1177
BspPI	GGATC	1 cut(s)	689
BspT107I	GGYRCC	2 cut(s)	28, 55
BsrDI	GCAATG	2 cut(s)	159, 459
BssECI	CCNNGG	3 cut(s)	41, 368, 870
BssMI	GATC	5 cut(s)	109, 183, 348, 505, 681
BssNI	GRCGYC	1 cut(s)	29
BssT1I	CCWWGG	1 cut(s)	870
Bst2UI	CCWGG	3 cut(s)	838, 1125, 1196
Bst4CI	ACNGT	5 cut(s)	339, 435, 640, 666, 826
Bst6I	CTCTTC	4 cut(s)	416, 443, 600, 759
BstACI	GRCGYC	1 cut(s)	29
BstAPI	GCANNNNNTGC	1 cut(s)	667
BstC8I	GCNNGC	1 cut(s)	1082
BstDEI	CTNAG	4 cut(s)	137, 286, 807, 849
BstDSI	CCRYGG	2 cut(s)	41, 368
BstF5I	GGATG	5 cut(s)	730, 817, 880, 1114, 1187
BstH2I	RGCGCY	1 cut(s)	32
BstHHI	GCGC	1 cut(s)	31
BstKTI	GATC	5 cut(s)	112, 186, 351, 508, 684
BstMAI	GTCTC	6 cut(s)	146, 276, 610, 629, 885, 890
BstMBI	GATC	5 cut(s)	109, 183, 348, 505, 681
BstMWI	GCNNNNNNNGC	9 cut(s)	67, 163, 172, 302, 311, 328, 667, 812, 1016
BstNI	CCWGG	3 cut(s)	838, 1125, 1196
BstSCI	CCNGG	4 cut(s)	836, 1123, 1141, 1194
BstSFI	CTRYAG	2 cut(s)	753, 1170
BstSLI	GKGCMC	1 cut(s)	1082
BstV1I	GCAGC	7 cut(s)	162, 283, 739, 790, 800, 894, 1074
BsuRI	GGCC	1 cut(s)	46
BtgI	CCRYGG	2 cut(s)	41, 368
BtsCI	GGATG	5 cut(s)	730, 817, 880, 1114, 1187
BtsIMutI	CAGTG	1 cut(s)	294
BveI	ACCTGC	1 cut(s)	1177
Cac8I	GCNNGC	1 cut(s)	1082
CaiI	CAGNNNCTG	1 cut(s)	175
CfoI	GCGC	1 cut(s)	31
Cfr13I	GGNCC	2 cut(s)	201, 942
CseI	GACGC	1 cut(s)	809
CsiI	ACCWGGT	1 cut(s)	1194
Csp6I	GTAC	2 cut(s)	16, 746
CviAII	CATG	3 cut(s)	356, 1058, 1104
CviQI	GTAC	2 cut(s)	16, 746
DdeI	CTNAG	4 cut(s)	137, 286, 807, 849
DinI	GGCGCC	1 cut(s)	30
DpnI	GATC	5 cut(s)	111, 185, 350, 507, 683
DpnII	GATC	5 cut(s)	109, 183, 348, 505, 681
Eam1104I	CTCTTC	4 cut(s)	416, 443, 600, 759
EarI	CTCTTC	4 cut(s)	416, 443, 600, 759
Ecl136II	GAGCTC	1 cut(s)	81
Eco130I	CCWWGG	1 cut(s)	870
Eco24I	GRGCYC	1 cut(s)	83
Eco47I	GGWCC	2 cut(s)	201, 942
Eco53kI	GAGCTC	1 cut(s)	81
Eco57I	CTGAAG	2 cut(s)	152, 936
EcoICRI	GAGCTC	1 cut(s)	81
EcoO109I	RGGNCCY	1 cut(s)	942
EcoRII	CCWGG	3 cut(s)	836, 1123, 1194
EcoT14I	CCWWGG	1 cut(s)	870
EcoT38I	GRGCYC	1 cut(s)	83
EgeI	GGCGCC	1 cut(s)	30
EheI	GGCGCC	1 cut(s)	30
ErhI	CCWWGG	1 cut(s)	870
Esp3I	CGTCTC	2 cut(s)	629, 885
FaeI	CATG	3 cut(s)	359, 1061, 1107
FaqI	GGGAC	1 cut(s)	955
FatI	CATG	3 cut(s)	355, 1057, 1103
FauI	CCCGC	3 cut(s)	41, 75, 1170
FbaI	TGATCA	2 cut(s)	183, 348
FokI	GGATG	5 cut(s)	737, 824, 887, 1121, 1174
FriOI	GRGCYC	1 cut(s)	83
FspBI	CTAG	2 cut(s)	531, 620
GlaI	GCGC	1 cut(s)	30
HaeII	RGCGCY	1 cut(s)	32
HaeIII	GGCC	1 cut(s)	46
HapII	CCGG	1 cut(s)	1143
HgaI	GACGC	1 cut(s)	809
HhaI	GCGC	1 cut(s)	31
Hin1I	GRCGYC	1 cut(s)	29
Hin1II	CATG	3 cut(s)	359, 1061, 1107
Hin6I	GCGC	1 cut(s)	29
HinP1I	GCGC	1 cut(s)	29
HindIII	AAGCTT	2 cut(s)	216, 590
HinfI	GANTC	4 cut(s)	139, 269, 623, 866
HpaII	CCGG	1 cut(s)	1143
HphI	GGTGA	2 cut(s)	224, 1105
Hpy188I	TCNGA	6 cut(s)	138, 171, 205, 238, 628, 860
Hpy188III	TCNNGA	4 cut(s)	118, 509, 679, 737
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	2 cut(s)	94, 989
HpyCH4III	ACNGT	5 cut(s)	339, 435, 640, 666, 826
HpyCH4IV	ACGT	1 cut(s)	102
HpyF10VI	GCNNNNNNNGC	9 cut(s)	67, 163, 172, 302, 311, 328, 667, 812, 1016
HpyF3I	CTNAG	4 cut(s)	137, 286, 807, 849
HpySE526I	ACGT	1 cut(s)	102
Hsp92I	GRCGYC	1 cut(s)	29
Hsp92II	CATG	3 cut(s)	359, 1061, 1107
HspAI	GCGC	1 cut(s)	29
KasI	GGCGCC	1 cut(s)	28
Ksp22I	TGATCA	2 cut(s)	183, 348
Kzo9I	GATC	5 cut(s)	109, 183, 348, 505, 681
LmnI	GCTCC	4 cut(s)	86, 481, 769, 1007
Lsp1109I	GCAGC	7 cut(s)	162, 283, 739, 790, 800, 894, 1074
LweI	GCATC	6 cut(s)	162, 399, 802, 1006, 1099, 1196
MabI	ACCWGGT	1 cut(s)	1194
MaeI	CTAG	2 cut(s)	531, 620
MaeII	ACGT	1 cut(s)	102
MaeIII	GTNAC	1 cut(s)	955
MalI	GATC	5 cut(s)	111, 185, 350, 507, 683
MboI	GATC	5 cut(s)	109, 183, 348, 505, 681
MboII	GAAGA	8 cut(s)	433, 460, 589, 617, 706, 773, 776, 1110
MfeI	CAATTG	1 cut(s)	179
MhlI	GDGCHC	2 cut(s)	83, 1082
MluCI	AATT	8 cut(s)	9, 179, 537, 582, 656, 689, 731, 1040
Mly113I	GGCGCC	1 cut(s)	29
MlyI	GAGTC	3 cut(s)	148, 278, 860
MmeI	TCCRAC	1 cut(s)	228
MseI	TTAA	1 cut(s)	594
MslI	CAYNNNNRTG	1 cut(s)	1073
MspA1I	CMGCKG	1 cut(s)	791
MspI	CCGG	1 cut(s)	1143
MspR9I	CCNGG	4 cut(s)	838, 1125, 1143, 1196
MunI	CAATTG	1 cut(s)	179
Mva1269I	GAATGC	1 cut(s)	307
MvaI	CCWGG	3 cut(s)	838, 1125, 1196
MwoI	GCNNNNNNNGC	9 cut(s)	67, 163, 172, 302, 311, 328, 667, 812, 1016
NarI	GGCGCC	1 cut(s)	29
NciI	CCSGG	1 cut(s)	1143
NdeII	GATC	5 cut(s)	109, 183, 348, 505, 681
NlaIII	CATG	3 cut(s)	359, 1061, 1107
NlaIV	GGNNCC	5 cut(s)	30, 57, 202, 336, 943
NmuCI	GTSAC	1 cut(s)	955
PaqCI	CACCTGC	1 cut(s)	1177
PctI	GAATGC	1 cut(s)	307
PfeI	GAWTC	1 cut(s)	623
PfoI	TCCNGGA	1 cut(s)	836
PleI	GAGTC	3 cut(s)	147, 277, 860
PluTI	GGCGCC	1 cut(s)	32
PpsI	GAGTC	3 cut(s)	147, 277, 860
PpuMI	RGGWCCY	1 cut(s)	942
Psp124BI	GAGCTC	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	942
Psp6I	CCWGG	3 cut(s)	836, 1123, 1194
PspGI	CCWGG	3 cut(s)	836, 1123, 1194
PspN4I	GGNNCC	5 cut(s)	30, 57, 202, 336, 943
PspPI	GGNCC	2 cut(s)	201, 942
PspPPI	RGGWCCY	1 cut(s)	942
PstI	CTGCAG	2 cut(s)	757, 1174
PstNI	CAGNNNCTG	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	791
RsaI	GTAC	2 cut(s)	17, 747
RsaNI	GTAC	2 cut(s)	16, 746
RseI	CAYNNNNRTG	1 cut(s)	1073
SacI	GAGCTC	1 cut(s)	83
SaqAI	TTAA	1 cut(s)	594
Sau3AI	GATC	5 cut(s)	109, 183, 348, 505, 681
Sau96I	GGNCC	2 cut(s)	201, 942
SchI	GAGTC	3 cut(s)	148, 278, 860
ScrFI	CCNGG	4 cut(s)	838, 1125, 1143, 1196
SduI	GDGCHC	2 cut(s)	83, 1082
SexAI	ACCWGGT	1 cut(s)	1194
SfaNI	GCATC	6 cut(s)	162, 399, 802, 1006, 1099, 1196
SfcI	CTRYAG	2 cut(s)	753, 1170
SfoI	GGCGCC	1 cut(s)	30
SinI	GGWCC	2 cut(s)	201, 942
SmiMI	CAYNNNNRTG	1 cut(s)	1073
SmlI	CTYRAG	3 cut(s)	116, 273, 632
SmoI	CTYRAG	3 cut(s)	116, 273, 632
Sse9I	AATT	8 cut(s)	9, 179, 537, 582, 656, 689, 731, 1040
SspDI	GGCGCC	1 cut(s)	28
SspMI	CTAG	2 cut(s)	531, 620
SstI	GAGCTC	1 cut(s)	83
StyD4I	CCNGG	4 cut(s)	836, 1123, 1141, 1194
StyI	CCWWGG	1 cut(s)	870
TaaI	ACNGT	5 cut(s)	339, 435, 640, 666, 826
TaiI	ACGT	1 cut(s)	105
TaqI	TCGA	4 cut(s)	77, 495, 508, 684
TasI	AATT	8 cut(s)	9, 179, 537, 582, 656, 689, 731, 1040
TauI	GCSGC	2 cut(s)	61, 1137
TfiI	GAWTC	1 cut(s)	623
Tru1I	TTAA	1 cut(s)	594
Tru9I	TTAA	1 cut(s)	594
TscAI	CASTG	1 cut(s)	294
TseFI	GTSAC	1 cut(s)	955
TseI	GCWGC	8 cut(s)	175, 296, 752, 788, 803, 882, 1062, 1201
Tsp45I	GTSAC	1 cut(s)	955
TspDTI	ATGAA	4 cut(s)	17, 372, 590, 891
TspGWI	ACGGA	4 cut(s)	30, 95, 211, 357
TspRI	CASTG	1 cut(s)	294
VpaK11BI	GGWCC	2 cut(s)	201, 942
XapI	RAATTY	2 cut(s)	731, 1040
XcmI	CCANNNNNNNNNTGG	1 cut(s)	562
XspI	CTAG	2 cut(s)	531, 620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.