Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Forward (+)

36893745 .. 36894592

Gene Structure 848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0259500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 762 bp

ATGGCGACGATCCAGAAAAATGAGTCGCTGAATTACTGGAGGGATTTCTTTGCCACTGCAAACAACTCCACCATTTTCGATGTTCTTGACCACGCCATCACCCTCGCTGCCTCCGATTTTCCGGAGGAGTTCACTCGCCAAAGGAGTCGAATTCTCGGTTCGATTCAGGGTTTGGGCGGCGGTGATTATCGGCGCTCCGATCTAGGGTTTGGTACAGCATCTGAAACTGGGTCGGAACAAAAGGTTGAGCCTTCAAAGCCATCGCTCAAAGTACGCATAAAGATCGTGAAGCGAAACGTTGATGGTACCTACCGTACCTTGATCAAACCCAGTTCAGATGAAGCTAAACCGATCAAGCCCTCTTCAGATGAGAATAAGTCGATCAAGCCGGAACCGTGTGTTGATAAAGTGGCACTTGATCGAGCGAAAATGATCAAGCCCCCACCCTGTGTTGGTGAAGCTAAATCGATCAAGCCGAAGCCGTGTTTGGATGAAGTGGCAATTGAGGCAAAGCTTCAGGCCACAAAGAGAAAGTTTCATGATCGATATGAAGAAATTGAGAACAGTAAGAAGCAGAGGAGGATACATGTCTTGAATTATCTTCCCAACCAAGACTTCAAGCTTGGCTGCCCTACCAGTACTAAACCACAAGGGAAGAAACTTGGAAACCATTGTCTACAGTCCTCGGCGAGAAGGCGGGTGGCAAATAAACTGGGTTTTCAGAGTTTTCAAAGTAACAGGATAGTCAGTGCTACCCACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

253

Amino Acids

28.36

Weight (kDa)

9.7

Isoelectric Point (pI)

48.54

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	305
AccB1I	GGYRCC	1 cut(s)	305
AccI	GTMKAC	1 cut(s)	676
AccIII	TCCGGA	1 cut(s)	121
AciI	CCGC	3 cut(s)	177, 180, 697
AclI	AACGTT	1 cut(s)	297
AclWI	GGATC	1 cut(s)	4
AcsI	RAATTY	1 cut(s)	150
AcuI	CTGAAG	2 cut(s)	348, 500
AdeI	CACNNNGTG	1 cut(s)	449
AfaI	GTAC	5 cut(s)	214, 273, 307, 316, 640
AfiI	CCNNNNNNNGG	2 cut(s)	204, 452
AflIII	ACRYGT	1 cut(s)	586
AgsI	TTSAA	4 cut(s)	255, 595, 619, 731
AjuI	GAANNNNNNNTTGG	4 cut(s)	470, 502, 599, 631
AluBI	AGCT	4 cut(s)	344, 461, 514, 622
AluI	AGCT	4 cut(s)	344, 461, 514, 622
AlwI	GGATC	1 cut(s)	4
AlwNI	CAGNNNCTG	1 cut(s)	221
Aor13HI	TCCGGA	1 cut(s)	121
AoxI	GGCC	1 cut(s)	519
ApeKI	GCWGC	2 cut(s)	107, 627
ApoI	RAATTY	1 cut(s)	150
Asp718I	GGTACC	1 cut(s)	305
AspLEI	GCGC	1 cut(s)	195
AsuHPI	GGTGA	3 cut(s)	91, 194, 467
BanI	GGYRCC	1 cut(s)	305
BbvI	GCAGC	2 cut(s)	94, 614
BccI	CCATC	3 cut(s)	104, 268, 296
BceAI	ACGGC	1 cut(s)	466
BcgI	CGANNNNNNTGC	2 cut(s)	265, 299
BciVI	GTATCC	1 cut(s)	576
BclI	TGATCA	2 cut(s)	321, 432
BfaI	CTAG	1 cut(s)	203
BfmI	CTRYAG	1 cut(s)	677
BfoI	RGCGCY	1 cut(s)	196
BfuI	GTATCC	1 cut(s)	576
BisI	GCNGC	3 cut(s)	108, 178, 628
BlsI	GCNGC	3 cut(s)	109, 179, 629
BmcAI	AGTACT	1 cut(s)	640
BmiI	GGNNCC	2 cut(s)	307, 393
BmrI	ACTGGG	3 cut(s)	237, 324, 722
BmsI	GCATC	1 cut(s)	227
BmuI	ACTGGG	3 cut(s)	237, 324, 722
BpmI	CTGGAG	1 cut(s)	58
Bsa29I	ATCGAT	2 cut(s)	467, 544
BsaJI	CCNNGG	1 cut(s)	684
BsaWI	WCCGGW	1 cut(s)	121
Bsc4I	CCNNNNNNNGG	2 cut(s)	204, 452
Bse1I	ACTGG	5 cut(s)	41, 232, 330, 636, 717
BseAI	TCCGGA	1 cut(s)	121
BseCI	ATCGAT	2 cut(s)	467, 544
BseDI	CCNNGG	1 cut(s)	684
BseGI	GGATG	1 cut(s)	496
BseLI	CCNNNNNNNGG	2 cut(s)	204, 452
BseNI	ACTGG	5 cut(s)	41, 232, 330, 636, 717
BseRI	GAGGAG	2 cut(s)	140, 592
BseXI	GCAGC	2 cut(s)	94, 614
BshFI	GGCC	1 cut(s)	521
BshNI	GGYRCC	1 cut(s)	305
BshVI	ATCGAT	2 cut(s)	467, 544
BsiSI	CCGG	2 cut(s)	122, 389
BslI	CCNNNNNNNGG	2 cut(s)	204, 452
BsnI	GGCC	1 cut(s)	521
Bsp13I	TCCGGA	1 cut(s)	121
BspACI	CCGC	3 cut(s)	177, 180, 697
BspANI	GGCC	1 cut(s)	521
BspDI	ATCGAT	2 cut(s)	467, 544
BspEI	TCCGGA	1 cut(s)	121
BspHI	TCATGA	1 cut(s)	538
BspLI	GGNNCC	2 cut(s)	307, 393
BspPI	GGATC	1 cut(s)	4
BspT107I	GGYRCC	1 cut(s)	305
BsrI	ACTGG	5 cut(s)	41, 232, 330, 636, 717
BssECI	CCNNGG	1 cut(s)	684
Bst4CI	ACNGT	4 cut(s)	314, 396, 566, 681
Bst6I	CTCTTC	1 cut(s)	367
BstF5I	GGATG	1 cut(s)	496
BstH2I	RGCGCY	1 cut(s)	196
BstHHI	GCGC	1 cut(s)	195
BstMWI	GCNNNNNNNGC	2 cut(s)	256, 506
BstNSI	RCATGY	1 cut(s)	590
BstSFI	CTRYAG	1 cut(s)	677
BstV1I	GCAGC	2 cut(s)	94, 614
Bsu15I	ATCGAT	2 cut(s)	467, 544
BsuI	GTATCC	1 cut(s)	576
BsuRI	GGCC	1 cut(s)	521
BsuTUI	ATCGAT	2 cut(s)	467, 544
BtgZI	GCGATG	1 cut(s)	246
BtsCI	GGATG	1 cut(s)	496
BtsI	GCAGTG	1 cut(s)	54
BtsIMutI	CAGTG	3 cut(s)	54, 754, 757
CaiI	CAGNNNCTG	1 cut(s)	221
CciI	TCATGA	1 cut(s)	538
CfoI	GCGC	1 cut(s)	195
ClaI	ATCGAT	2 cut(s)	467, 544
Csp6I	GTAC	5 cut(s)	213, 272, 306, 315, 639
CviAII	CATG	2 cut(s)	539, 587
CviQI	GTAC	5 cut(s)	213, 272, 306, 315, 639
DraIII	CACNNNGTG	1 cut(s)	449
Eam1104I	CTCTTC	1 cut(s)	367
EarI	CTCTTC	1 cut(s)	367
Eco57I	CTGAAG	2 cut(s)	348, 500
EcoRI	GAATTC	1 cut(s)	150
FaeI	CATG	2 cut(s)	542, 590
FaiI	YATR	4 cut(s)	278, 540, 549, 588
FalI	AAGNNNNNCTT	2 cut(s)	399, 431
FatI	CATG	2 cut(s)	538, 586
FauI	CCCGC	1 cut(s)	690
FbaI	TGATCA	2 cut(s)	321, 432
FblI	GTMKAC	1 cut(s)	676
Fnu4HI	GCNGC	3 cut(s)	108, 178, 628
FokI	GGATG	1 cut(s)	503
Fsp4HI	GCNGC	3 cut(s)	108, 178, 628
FspBI	CTAG	1 cut(s)	203
GlaI	GCGC	1 cut(s)	194
GluI	GCNGC	3 cut(s)	108, 178, 628
GsuI	CTGGAG	1 cut(s)	58
HaeII	RGCGCY	1 cut(s)	196
HaeIII	GGCC	1 cut(s)	521
HapII	CCGG	2 cut(s)	122, 389
HhaI	GCGC	1 cut(s)	195
Hin1II	CATG	2 cut(s)	542, 590
Hin6I	GCGC	1 cut(s)	193
HinP1I	GCGC	1 cut(s)	193
HindIII	AAGCTT	2 cut(s)	512, 620
HinfI	GANTC	3 cut(s)	23, 145, 163
HpaII	CCGG	2 cut(s)	122, 389
HphI	GGTGA	3 cut(s)	91, 194, 467
Hpy166II	GTNNAC	2 cut(s)	132, 677
Hpy188I	TCNGA	7 cut(s)	115, 199, 223, 235, 337, 367, 723
Hpy188III	TCNNGA	6 cut(s)	13, 86, 122, 286, 539, 592
Hpy8I	GTNNAC	2 cut(s)	132, 677
Hpy99I	CGWCG	1 cut(s)	10
HpyAV	CCTTC	2 cut(s)	261, 687
HpyCH4III	ACNGT	4 cut(s)	314, 396, 566, 681
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	1 cut(s)	59
HpyF10VI	GCNNNNNNNGC	2 cut(s)	256, 506
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	542, 590
HspAI	GCGC	1 cut(s)	193
Kpn2I	TCCGGA	1 cut(s)	121
KpnI	GGTACC	1 cut(s)	309
Ksp22I	TGATCA	2 cut(s)	321, 432
LmnI	GCTCC	1 cut(s)	200
Lsp1109I	GCAGC	2 cut(s)	94, 614
LweI	GCATC	1 cut(s)	227
MaeI	CTAG	1 cut(s)	203
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	1 cut(s)	734
MboII	GAAGA	4 cut(s)	354, 563, 593, 667
MfeI	CAATTG	1 cut(s)	501
MluCI	AATT	5 cut(s)	31, 150, 501, 555, 595
MlyI	GAGTC	2 cut(s)	32, 154
MmeI	TCCRAC	1 cut(s)	213
MnlI	CCTC	9 cut(s)	33, 113, 118, 121, 370, 499, 570, 573, 694
MroI	TCCGGA	1 cut(s)	121
MspI	CCGG	2 cut(s)	122, 389
MunI	CAATTG	1 cut(s)	501
MwoI	GCNNNNNNNGC	2 cut(s)	256, 506
NlaIII	CATG	2 cut(s)	542, 590
NlaIV	GGNNCC	2 cut(s)	307, 393
NmeAIII	GCCGAG	1 cut(s)	665
NspI	RCATGY	1 cut(s)	590
PagI	TCATGA	1 cut(s)	538
PciI	ACATGT	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	2 cut(s)	111, 473
PfeI	GAWTC	1 cut(s)	163
PkrI	GCNGC	3 cut(s)	109, 179, 629
PleI	GAGTC	2 cut(s)	31, 153
PpsI	GAGTC	2 cut(s)	31, 153
PscI	ACATGT	1 cut(s)	586
Psp1406I	AACGTT	1 cut(s)	297
PspN4I	GGNNCC	2 cut(s)	307, 393
PstNI	CAGNNNCTG	1 cut(s)	221
RsaI	GTAC	5 cut(s)	214, 273, 307, 316, 640
RsaNI	GTAC	5 cut(s)	213, 272, 306, 315, 639
SatI	GCNGC	3 cut(s)	108, 178, 628
ScaI	AGTACT	1 cut(s)	640
SchI	GAGTC	2 cut(s)	32, 154
SetI	ASST	8 cut(s)	246, 300, 311, 320, 346, 463, 516, 624
SfaNI	GCATC	1 cut(s)	227
SfcI	CTRYAG	1 cut(s)	677
Sse9I	AATT	5 cut(s)	31, 150, 501, 555, 595
SsiI	CCGC	3 cut(s)	177, 180, 697
SspMI	CTAG	1 cut(s)	203
TaaI	ACNGT	4 cut(s)	314, 396, 566, 681
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	7 cut(s)	78, 148, 161, 380, 421, 467, 544
TasI	AATT	5 cut(s)	31, 150, 501, 555, 595
TatI	WGTACW	1 cut(s)	638
TauI	GCSGC	1 cut(s)	180
TfiI	GAWTC	1 cut(s)	163
TscAI	CASTG	2 cut(s)	61, 754
TseI	GCWGC	2 cut(s)	107, 627
TspDTI	ATGAA	4 cut(s)	354, 507, 527, 564
TspRI	CASTG	2 cut(s)	61, 754
XapI	RAATTY	1 cut(s)	150
XceI	RCATGY	1 cut(s)	590
XmiI	GTMKAC	1 cut(s)	676
XspI	CTAG	1 cut(s)	203
ZrmI	AGTACT	1 cut(s)	640

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.