Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007849.1

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Forward (+)

41203 .. 43357

Gene Structure 2155 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007849.1_g000015.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1149 bp

atgagtggcacagataaagcgttttgttccagttcttggtttacttcccctaaagactcaagaagtaggaaaacacctatagattcaatgcaagagtcgacttccgaccagcctctaaaatccagaaagaggctgagtgcaaagcctagtgaactgttaagggatgaatatgttgtagctctatatgcaagagatatccctggtcttcatgtcgcaaggcaaagagttaaaggtggtggttggttcctagatcccatgtcaaatgtaatgaaaagagatcatgcagctcagttcctcattgtaatcagacgcaagaataccattggtttgagatcatttgctgctgatggaaagttattgcagataaataaaagaatggaatttgtattcgcaactcatagtttggtagccatgaatccaaatccataccaacctatagcacctccacctccatggcctctaatgttaccacctaaccctccaatgatgcttcccaacgctcctatggtgtcccccaaccctccagtcaagagcactttctgggagaccgcaaatgggttttctaagtttttgaaagatgggaagattgatttggaggcccaagtgttgcaatcagtggaagctgcaaactctttaatggctaaactacgagttgagcttgaacagtttagagtgatcacgcacgaaatgtgtccctgggaggaaaaatctgcggctgtccaattatccaataagatatgcaagtccaagaggaataaacggtggaggaaaagaaagaggaagcgcattgcggagatgattgcaaaggaacgtgaagggtttgatgaagctgatgaatggagagctagggaaattgcaaaggatattgccaaacgcaagatggaagacatgaagaaaattgcaagccttaaagcaaaggaagagagaaagagactagaatccaagcttgagacagtattgattgttgagaaattgcaagagttgcactccatcaggattgaaaaaatgaagaaacaaggccattttctcccagaagaagatgataaatttcttgaaagagtacgagctgcagttgaggaggaggagcataaagtaatcttggcagctgacatggatgctgctagggatgccattgcaactgctgagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

382

Amino Acids

43.84

Weight (kDa)

9.66

Isoelectric Point (pI)

56.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	36
AccI	GTMKAC	1 cut(s)	98
AciI	CCGC	3 cut(s)	549, 713, 791
AclWI	GGATC	1 cut(s)	245
AcsI	RAATTY	2 cut(s)	380, 1046
AfaI	GTAC	1 cut(s)	1062
AfiI	CCNNNNNNNGG	3 cut(s)	36, 129, 555
AgsI	TTSAA	5 cut(s)	87, 574, 662, 1001, 1055
AjnI	CCWGG	2 cut(s)	199, 695
AjuI	GAANNNNNNNTTGG	2 cut(s)	575, 607
AluBI	AGCT	9 cut(s)	179, 287, 623, 658, 830, 845, 946, 1067, 1106
AluI	AGCT	9 cut(s)	179, 287, 623, 658, 830, 845, 946, 1067, 1106
Alw21I	GWGCWC	1 cut(s)	536
Alw26I	GTCTC	3 cut(s)	539, 925, 944
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	3 cut(s)	455, 597, 1018
ApeKI	GCWGC	6 cut(s)	284, 341, 623, 1067, 1103, 1118
ApoI	RAATTY	2 cut(s)	380, 1046
AspLEI	GCGC	1 cut(s)	786
AspS9I	GGNCC	1 cut(s)	598
BbsI	GAAGAC	2 cut(s)	197, 891
Bbv12I	GWGCWC	1 cut(s)	536
BbvI	GCAGC	6 cut(s)	296, 328, 610, 1054, 1105, 1115
BccI	CCATC	4 cut(s)	341, 572, 874, 998
BciT130I	CCWGG	2 cut(s)	201, 697
BclI	TGATCA	1 cut(s)	675
BcoDI	GTCTC	3 cut(s)	539, 925, 944
BfaI	CTAG	5 cut(s)	147, 248, 846, 935, 1122
BfmI	CTRYAG	3 cut(s)	78, 435, 1068
BisI	GCNGC	7 cut(s)	285, 342, 624, 714, 1068, 1104, 1119
BlsI	GCNGC	7 cut(s)	286, 343, 625, 715, 1069, 1105, 1120
Bme1390I	CCNGG	2 cut(s)	201, 697
BmgT120I	GGNCC	1 cut(s)	598
BmiI	GGNNCC	1 cut(s)	245
BmrFI	CCNGG	2 cut(s)	201, 697
BmsI	GCATC	3 cut(s)	477, 1105, 1117
BpiI	GAAGAC	2 cut(s)	197, 891
BplI	GAGNNNNNCTC	2 cut(s)	971, 1003
BpmI	CTGGAG	1 cut(s)	507
BpuEI	CTTGAG	2 cut(s)	43, 968
BsaI	GGTCTC	1 cut(s)	539
BsaJI	CCNNGG	4 cut(s)	199, 452, 695, 696
Bsc4I	CCNNNNNNNGG	3 cut(s)	36, 129, 555
Bse1I	ACTGG	2 cut(s)	30, 524
Bse3DI	GCAATG	2 cut(s)	786, 1131
BseBI	CCWGG	2 cut(s)	201, 697
BseDI	CCNNGG	4 cut(s)	199, 452, 695, 696
BseGI	GGATG	3 cut(s)	169, 1120, 1132
BseLI	CCNNNNNNNGG	3 cut(s)	36, 129, 555
BseMI	GCAATG	2 cut(s)	786, 1131
BseMII	CTCAG	3 cut(s)	125, 302, 1134
BseNI	ACTGG	2 cut(s)	30, 524
BseRI	GAGGAG	3 cut(s)	1091, 1094, 1097
BseXI	GCAGC	6 cut(s)	296, 328, 610, 1054, 1105, 1115
BshFI	GGCC	3 cut(s)	457, 599, 1020
BsiHKAI	GWGCWC	1 cut(s)	536
BslFI	GGGAC	2 cut(s)	496, 678
BslI	CCNNNNNNNGG	3 cut(s)	36, 129, 555
BsmAI	GTCTC	3 cut(s)	539, 925, 944
BsmFI	GGGAC	2 cut(s)	496, 678
BsnI	GGCC	3 cut(s)	457, 599, 1020
Bso31I	GGTCTC	1 cut(s)	539
Bsp1286I	GDGCHC	1 cut(s)	536
Bsp143I	GATC	4 cut(s)	250, 277, 332, 675
Bsp19I	CCATGG	1 cut(s)	452
BspACI	CCGC	3 cut(s)	549, 713, 791
BspANI	GGCC	3 cut(s)	457, 599, 1020
BspCNI	CTCAG	3 cut(s)	126, 301, 1135
BspLI	GGNNCC	1 cut(s)	245
BspMAI	CTGCAG	1 cut(s)	1072
BspPI	GGATC	1 cut(s)	245
BspTNI	GGTCTC	1 cut(s)	539
BsrDI	GCAATG	2 cut(s)	786, 1131
BsrI	ACTGG	2 cut(s)	30, 524
BssECI	CCNNGG	4 cut(s)	199, 452, 695, 696
BssMI	GATC	4 cut(s)	250, 277, 332, 675
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	2 cut(s)	201, 697
Bst4CI	ACNGT	4 cut(s)	156, 666, 762, 955
Bst6I	CTCTTC	1 cut(s)	915
BstAPI	GCANNNNNTGC	1 cut(s)	982
BstC8I	GCNNGC	1 cut(s)	904
BstDEI	CTNAG	4 cut(s)	134, 288, 564, 1143
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	3 cut(s)	169, 1120, 1132
BstHHI	GCGC	1 cut(s)	786
BstKTI	GATC	4 cut(s)	253, 280, 335, 678
BstMAI	GTCTC	3 cut(s)	539, 925, 944
BstMBI	GATC	4 cut(s)	250, 277, 332, 675
BstMWI	GCNNNNNNNGC	3 cut(s)	185, 982, 1127
BstNI	CCWGG	2 cut(s)	201, 697
BstSCI	CCNGG	2 cut(s)	199, 695
BstSFI	CTRYAG	3 cut(s)	78, 435, 1068
BstV1I	GCAGC	6 cut(s)	296, 328, 610, 1054, 1105, 1115
BstV2I	GAAGAC	2 cut(s)	197, 891
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	453
BstYI	RGATCY	1 cut(s)	250
BsuRI	GGCC	3 cut(s)	457, 599, 1020
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	3 cut(s)	169, 1120, 1132
BtsIMutI	CAGTG	1 cut(s)	621
Cac8I	GCNNGC	1 cut(s)	904
CfoI	GCGC	1 cut(s)	786
Cfr13I	GGNCC	1 cut(s)	598
CseI	GACGC	1 cut(s)	318
Csp6I	GTAC	1 cut(s)	1061
CviAII	CATG	7 cut(s)	209, 256, 281, 412, 453, 889, 1111
CviQI	GTAC	1 cut(s)	1061
DdeI	CTNAG	4 cut(s)	134, 288, 564, 1143
DpnI	GATC	4 cut(s)	252, 279, 334, 677
DpnII	GATC	4 cut(s)	250, 277, 332, 675
Eam1104I	CTCTTC	1 cut(s)	915
EarI	CTCTTC	1 cut(s)	915
Eco130I	CCWWGG	1 cut(s)	452
Eco31I	GGTCTC	1 cut(s)	539
Eco32I	GATATC	1 cut(s)	196
EcoRII	CCWGG	2 cut(s)	199, 695
EcoRV	GATATC	1 cut(s)	196
EcoT14I	CCWWGG	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	7 cut(s)	212, 259, 284, 415, 456, 892, 1114
FaqI	GGGAC	2 cut(s)	496, 678
FatI	CATG	7 cut(s)	208, 255, 280, 411, 452, 888, 1110
FbaI	TGATCA	1 cut(s)	675
FblI	GTMKAC	1 cut(s)	98
Fnu4HI	GCNGC	7 cut(s)	285, 342, 624, 714, 1068, 1104, 1119
FokI	GGATG	3 cut(s)	176, 1127, 1139
Fsp4HI	GCNGC	7 cut(s)	285, 342, 624, 714, 1068, 1104, 1119
FspBI	CTAG	5 cut(s)	147, 248, 846, 935, 1122
GlaI	GCGC	1 cut(s)	785
GluI	GCNGC	7 cut(s)	285, 342, 624, 714, 1068, 1104, 1119
GsuI	CTGGAG	1 cut(s)	507
HaeIII	GGCC	3 cut(s)	457, 599, 1020
HgaI	GACGC	1 cut(s)	318
HhaI	GCGC	1 cut(s)	786
Hin1II	CATG	7 cut(s)	212, 259, 284, 415, 456, 892, 1114
Hin6I	GCGC	1 cut(s)	784
HinP1I	GCGC	1 cut(s)	784
HincII	GTYRAC	1 cut(s)	99
HindII	GTYRAC	1 cut(s)	99
HindIII	AAGCTT	1 cut(s)	944
HinfI	GANTC	5 cut(s)	56, 83, 95, 415, 938
Hpy166II	GTNNAC	3 cut(s)	42, 99, 152
Hpy188I	TCNGA	2 cut(s)	106, 308
Hpy188III	TCNNGA	5 cut(s)	60, 123, 529, 994, 1052
Hpy8I	GTNNAC	3 cut(s)	42, 99, 152
HpyAV	CCTTC	1 cut(s)	809
HpyCH4III	ACNGT	4 cut(s)	156, 666, 762, 955
HpyCH4IV	ACGT	1 cut(s)	811
HpyF10VI	GCNNNNNNNGC	3 cut(s)	185, 982, 1127
HpyF3I	CTNAG	4 cut(s)	134, 288, 564, 1143
HpySE526I	ACGT	1 cut(s)	811
Hsp92II	CATG	7 cut(s)	212, 259, 284, 415, 456, 892, 1114
HspAI	GCGC	1 cut(s)	784
Ksp22I	TGATCA	1 cut(s)	675
Kzo9I	GATC	4 cut(s)	250, 277, 332, 675
LmnI	GCTCC	2 cut(s)	505, 1084
Lsp1109I	GCAGC	6 cut(s)	296, 328, 610, 1054, 1105, 1115
LweI	GCATC	3 cut(s)	477, 1105, 1117
MaeI	CTAG	5 cut(s)	147, 248, 846, 935, 1122
MaeII	ACGT	1 cut(s)	811
MaeIII	GTNAC	1 cut(s)	465
MalI	GATC	4 cut(s)	252, 279, 334, 677
MboI	GATC	4 cut(s)	250, 277, 332, 675
MboII	GAAGA	8 cut(s)	197, 595, 896, 904, 932, 1021, 1046, 1049
MflI	RGATCY	1 cut(s)	250
MhlI	GDGCHC	1 cut(s)	536
MluCI	AATT	6 cut(s)	380, 722, 852, 897, 971, 1046
MlyI	GAGTC	2 cut(s)	50, 104
MmeI	TCCRAC	1 cut(s)	129
MseI	TTAA	4 cut(s)	158, 228, 635, 909
MslI	CAYNNNNRTG	1 cut(s)	451
MspA1I	CMGCKG	1 cut(s)	1106
MspR9I	CCNGG	2 cut(s)	201, 697
MvaI	CCWGG	2 cut(s)	201, 697
MwoI	GCNNNNNNNGC	3 cut(s)	185, 982, 1127
NcoI	CCATGG	1 cut(s)	452
NdeII	GATC	4 cut(s)	250, 277, 332, 675
NlaIII	CATG	7 cut(s)	212, 259, 284, 415, 456, 892, 1114
NlaIV	GGNNCC	1 cut(s)	245
PasI	CCCWGGG	1 cut(s)	696
PfeI	GAWTC	3 cut(s)	83, 415, 938
PflMI	CCANNNNNTGG	1 cut(s)	36
PkrI	GCNGC	7 cut(s)	286, 343, 625, 715, 1069, 1105, 1120
PleI	GAGTC	2 cut(s)	50, 103
PpsI	GAGTC	2 cut(s)	50, 103
Psp6I	CCWGG	2 cut(s)	199, 695
PspGI	CCWGG	2 cut(s)	199, 695
PspN4I	GGNNCC	1 cut(s)	245
PspPI	GGNCC	1 cut(s)	598
PstI	CTGCAG	1 cut(s)	1072
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	1106
RsaI	GTAC	1 cut(s)	1062
RsaNI	GTAC	1 cut(s)	1061
RseI	CAYNNNNRTG	1 cut(s)	451
SalI	GTCGAC	1 cut(s)	97
SaqAI	TTAA	4 cut(s)	158, 228, 635, 909
SatI	GCNGC	7 cut(s)	285, 342, 624, 714, 1068, 1104, 1119
Sau3AI	GATC	4 cut(s)	250, 277, 332, 675
Sau96I	GGNCC	1 cut(s)	598
SchI	GAGTC	2 cut(s)	50, 104
ScrFI	CCNGG	2 cut(s)	201, 697
SduI	GDGCHC	1 cut(s)	536
SfaNI	GCATC	3 cut(s)	477, 1105, 1117
SfcI	CTRYAG	3 cut(s)	78, 435, 1068
SmiMI	CAYNNNNRTG	1 cut(s)	451
SmlI	CTYRAG	2 cut(s)	58, 947
SmoI	CTYRAG	2 cut(s)	58, 947
Sse9I	AATT	6 cut(s)	380, 722, 852, 897, 971, 1046
SsiI	CCGC	3 cut(s)	549, 713, 791
SspMI	CTAG	5 cut(s)	147, 248, 846, 935, 1122
StyD4I	CCNGG	2 cut(s)	199, 695
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	4 cut(s)	156, 666, 762, 955
TaiI	ACGT	1 cut(s)	814
TaqI	TCGA	1 cut(s)	98
TasI	AATT	6 cut(s)	380, 722, 852, 897, 971, 1046
TauI	GCSGC	1 cut(s)	716
TfiI	GAWTC	3 cut(s)	83, 415, 938
Tru1I	TTAA	4 cut(s)	158, 228, 635, 909
Tru9I	TTAA	4 cut(s)	158, 228, 635, 909
TscAI	CASTG	1 cut(s)	621
TseI	GCWGC	6 cut(s)	284, 341, 623, 1067, 1103, 1118
TspDTI	ATGAA	8 cut(s)	180, 197, 284, 428, 840, 849, 905, 1022
TspRI	CASTG	1 cut(s)	621
Van91I	CCANNNNNTGG	1 cut(s)	36
XapI	RAATTY	2 cut(s)	380, 1046
XcmI	CCANNNNNNNNNTGG	2 cut(s)	502, 877
XmiI	GTMKAC	1 cut(s)	98
XspI	CTAG	5 cut(s)	147, 248, 846, 935, 1122

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.