Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

50097582 .. 50099807

Gene Structure 2226 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG273200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1329 bp

ATGCAAGAGTCGCCTTCCGACCAGCTTCTAAAATCCAGAAAGAGGCCGAGTGGAAAGCCTGGTGAACTGTTAAGGGATGGCTATGTTGTAGCTCTATATGCAAGAGATATCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTGCTAGATACCATGTCAAATGTAATCAAAAGAGATCCTGCAGCTCAGTTCCTCATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCATTTGCTGCTGGTGGAAAGTTATTGCAGATATATAGAAGAATGGAATTTGTATTCGCAACTCACAGTTTGGTAGCCATGAATCCAAATCCATACCAACCTATGGCACCTCCACCTCCACCTCCATGGCCTCGAATGTTGCCGCCTAAGCCTCCAATGATGCCTCCCAACGCTCCTATGGTGCCCCCCAACCCTCCGGTCACGAGCACTTTCTGGGAGACAGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATCAGAGATGGTAAGGGGTCTGATGATGCTTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAGATAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCTTTAATGGCTAAACTACTAGTTGAGCTTGAACCGTTTAGAGTGATCACGCACGAAATGTGTCCCTGGGAGGAAAAATCTGCGGCTGTCCAATTATCCAATAAGATATGCAAGTCCAAGAGGAATAAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGATATTGATTGTTGAGAAATTGCAAGAGTTGCGCTCCATCAGGATTGAAAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACGACCGAGAATTTCAGACCTGACTCTATTAATCAAAGCAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCCCGACAATTCCAAGCACTAATGAAGGCAACTCTACTGCAGTCACTAAGAAGGAATCTGGATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

442

Amino Acids

50.04

Weight (kDa)

9.45

Isoelectric Point (pI)

54.83

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	352, 427
AccB7I	CCANNNNNTGG	1 cut(s)	349
AciI	CCGC	4 cut(s)	389, 594, 752, 830
AclWI	GGATC	1 cut(s)	185
AcsI	RAATTY	4 cut(s)	293, 493, 1082, 1204
AcuI	CTGAAG	1 cut(s)	509
AfaI	GTAC	1 cut(s)	1098
AfiI	CCNNNNNNNGG	3 cut(s)	42, 349, 1072
AgsI	TTSAA	4 cut(s)	613, 701, 1037, 1091
AhlI	ACTAGT	1 cut(s)	688
AjnI	CCWGG	2 cut(s)	58, 734
AjuI	GAANNNNNNNTTGG	2 cut(s)	614, 646
Alw21I	GWGCWC	1 cut(s)	455
Alw26I	GTCTC	2 cut(s)	458, 964
AlwI	GGATC	1 cut(s)	185
AoxI	GGCC	5 cut(s)	44, 374, 636, 1054, 1264
ApeKI	GCWGC	6 cut(s)	197, 254, 662, 1103, 1139, 1154
ApoI	RAATTY	4 cut(s)	293, 493, 1082, 1204
AseI	ATTAAT	1 cut(s)	1224
AspLEI	GCGC	2 cut(s)	825, 1023
AspS9I	GGNCC	2 cut(s)	637, 1265
AsuC2I	CCSGG	1 cut(s)	114
AsuHPI	GGTGA	1 cut(s)	74
BaeGI	GKGCMC	1 cut(s)	432
BanI	GGYRCC	2 cut(s)	352, 427
BarI	GAAGNNNNNNTAC	2 cut(s)	214, 246
BauI	CACGAG	1 cut(s)	448
BbsI	GAAGAC	2 cut(s)	110, 930
Bbv12I	GWGCWC	1 cut(s)	455
BbvI	GCAGC	6 cut(s)	209, 241, 649, 1090, 1141, 1151
BccI	CCATC	4 cut(s)	71, 557, 913, 1034
BciT130I	CCWGG	2 cut(s)	60, 736
BciVI	GTATCC	1 cut(s)	223
BclI	TGATCA	3 cut(s)	481, 555, 714
BcnI	CCSGG	1 cut(s)	114
BcoDI	GTCTC	2 cut(s)	458, 964
BcuI	ACTAGT	1 cut(s)	688
BfaI	CTAG	5 cut(s)	161, 689, 885, 974, 1158
BfmI	CTRYAG	3 cut(s)	195, 1104, 1302
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	8 cut(s)	198, 255, 389, 663, 753, 1104, 1140, 1155
BlpI	GCTNAGC	1 cut(s)	1179
BlsI	GCNGC	8 cut(s)	199, 256, 390, 664, 754, 1105, 1141, 1156
Bme1390I	CCNGG	3 cut(s)	60, 114, 736
BmgT120I	GGNCC	2 cut(s)	637, 1265
BmiI	GGNNCC	2 cut(s)	354, 429
BmrFI	CCNGG	3 cut(s)	60, 114, 736
BmsI	GCATC	6 cut(s)	396, 534, 571, 1132, 1141, 1153
BpiI	GAAGAC	2 cut(s)	110, 930
BplI	GAGNNNNNCTC	2 cut(s)	1007, 1039
Bpu10I	CCTNAGC	1 cut(s)	393
Bpu1102I	GCTNAGC	1 cut(s)	1179
BpuEI	CTTGAG	2 cut(s)	560, 1007
BpuMI	CCSGG	1 cut(s)	114
BsaBI	GATNNNNATC	1 cut(s)	554
BsaJI	CCNNGG	4 cut(s)	112, 371, 734, 735
BsaWI	WCCGGW	1 cut(s)	442
Bsc4I	CCNNNNNNNGG	3 cut(s)	42, 349, 1072
Bse3DI	GCAATG	3 cut(s)	531, 825, 1167
Bse8I	GATNNNNATC	1 cut(s)	554
BseBI	CCWGG	2 cut(s)	60, 736
BseDI	CCNNGG	4 cut(s)	112, 371, 734, 735
BseGI	GGATG	4 cut(s)	82, 1081, 1156, 1168
BseJI	GATNNNNATC	1 cut(s)	554
BseLI	CCNNNNNNNGG	3 cut(s)	42, 349, 1072
BseMI	GCAATG	3 cut(s)	531, 825, 1167
BseMII	CTCAG	3 cut(s)	215, 594, 1170
BseRI	GAGGAG	3 cut(s)	1127, 1130, 1133
BseSI	GKGCMC	1 cut(s)	432
BseXI	GCAGC	6 cut(s)	209, 241, 649, 1090, 1141, 1151
Bsh1285I	CGRYCG	1 cut(s)	1200
BshFI	GGCC	5 cut(s)	46, 376, 638, 1056, 1266
BshNI	GGYRCC	2 cut(s)	352, 427
BsiEI	CGRYCG	1 cut(s)	1200
BsiHKAI	GWGCWC	1 cut(s)	455
BsiSI	CCGG	2 cut(s)	114, 443
BslFI	GGGAC	1 cut(s)	717
BslI	CCNNNNNNNGG	3 cut(s)	42, 349, 1072
BsmAI	GTCTC	2 cut(s)	458, 964
BsmFI	GGGAC	1 cut(s)	717
BsnI	GGCC	5 cut(s)	46, 376, 638, 1056, 1266
Bsp1286I	GDGCHC	2 cut(s)	432, 455
Bsp143I	GATC	5 cut(s)	190, 245, 481, 555, 714
Bsp1720I	GCTNAGC	1 cut(s)	1179
Bsp19I	CCATGG	1 cut(s)	371
BspACI	CCGC	4 cut(s)	389, 594, 752, 830
BspANI	GGCC	5 cut(s)	46, 376, 638, 1056, 1266
BspCNI	CTCAG	3 cut(s)	214, 595, 1171
BspLI	GGNNCC	2 cut(s)	354, 429
BspMAI	CTGCAG	3 cut(s)	199, 1108, 1306
BspPI	GGATC	1 cut(s)	185
BspT107I	GGYRCC	2 cut(s)	352, 427
BsrDI	GCAATG	3 cut(s)	531, 825, 1167
BssECI	CCNNGG	4 cut(s)	112, 371, 734, 735
BssMI	GATC	5 cut(s)	190, 245, 481, 555, 714
BssSI	CACGAG	1 cut(s)	448
BssT1I	CCWWGG	1 cut(s)	371
Bst2BI	CACGAG	1 cut(s)	448
Bst2UI	CCWGG	2 cut(s)	60, 736
Bst4CI	ACNGT	4 cut(s)	69, 314, 705, 801
Bst6I	CTCTTC	2 cut(s)	954, 1065
BstAPI	GCANNNNNTGC	1 cut(s)	1018
BstC8I	GCNNGC	1 cut(s)	943
BstDEI	CTNAG	5 cut(s)	201, 393, 603, 1179, 1311
BstDSI	CCRYGG	1 cut(s)	371
BstF5I	GGATG	4 cut(s)	82, 1081, 1156, 1168
BstHHI	GCGC	2 cut(s)	825, 1023
BstKTI	GATC	5 cut(s)	193, 248, 484, 558, 717
BstMAI	GTCTC	2 cut(s)	458, 964
BstMBI	GATC	5 cut(s)	190, 245, 481, 555, 714
BstMCI	CGRYCG	1 cut(s)	1200
BstMWI	GCNNNNNNNGC	9 cut(s)	10, 98, 394, 484, 535, 544, 1018, 1136, 1163
BstNI	CCWGG	2 cut(s)	60, 736
BstSCI	CCNGG	3 cut(s)	58, 112, 734
BstSFI	CTRYAG	3 cut(s)	195, 1104, 1302
BstSLI	GKGCMC	1 cut(s)	432
BstV1I	GCAGC	6 cut(s)	209, 241, 649, 1090, 1141, 1151
BstV2I	GAAGAC	2 cut(s)	110, 930
BstX2I	RGATCY	1 cut(s)	190
BstXI	CCANNNNNNTGG	1 cut(s)	372
BstYI	RGATCY	1 cut(s)	190
BsuI	GTATCC	1 cut(s)	223
BsuRI	GGCC	5 cut(s)	46, 376, 638, 1056, 1266
BtgI	CCRYGG	1 cut(s)	371
BtsCI	GGATG	4 cut(s)	82, 1081, 1156, 1168
BtsI	GCAGTG	1 cut(s)	1240
BtsIMutI	CAGTG	2 cut(s)	660, 1240
Cac8I	GCNNGC	1 cut(s)	943
CfoI	GCGC	2 cut(s)	825, 1023
Cfr13I	GGNCC	2 cut(s)	637, 1265
Csp6I	GTAC	1 cut(s)	1097
CviAII	CATG	6 cut(s)	122, 169, 325, 372, 928, 1147
CviQI	GTAC	1 cut(s)	1097
DdeI	CTNAG	5 cut(s)	201, 393, 603, 1179, 1311
DpnI	GATC	5 cut(s)	192, 247, 483, 557, 716
DpnII	GATC	5 cut(s)	190, 245, 481, 555, 714
Eam1104I	CTCTTC	2 cut(s)	954, 1065
EarI	CTCTTC	2 cut(s)	954, 1065
Eco130I	CCWWGG	1 cut(s)	371
Eco32I	GATATC	1 cut(s)	109
Eco57I	CTGAAG	1 cut(s)	509
EcoRII	CCWGG	2 cut(s)	58, 734
EcoRV	GATATC	1 cut(s)	109
EcoT14I	CCWWGG	1 cut(s)	371
ErhI	CCWWGG	1 cut(s)	371
FaeI	CATG	6 cut(s)	125, 172, 328, 375, 931, 1150
FaqI	GGGAC	1 cut(s)	717
FatI	CATG	6 cut(s)	121, 168, 324, 371, 927, 1146
FauI	CCCGC	1 cut(s)	587
FbaI	TGATCA	3 cut(s)	481, 555, 714
Fnu4HI	GCNGC	8 cut(s)	198, 255, 389, 663, 753, 1104, 1140, 1155
FokI	GGATG	4 cut(s)	89, 1088, 1163, 1175
Fsp4HI	GCNGC	8 cut(s)	198, 255, 389, 663, 753, 1104, 1140, 1155
FspBI	CTAG	5 cut(s)	161, 689, 885, 974, 1158
GlaI	GCGC	2 cut(s)	824, 1022
GluI	GCNGC	8 cut(s)	198, 255, 389, 663, 753, 1104, 1140, 1155
HaeIII	GGCC	5 cut(s)	46, 376, 638, 1056, 1266
HapII	CCGG	2 cut(s)	114, 443
HhaI	GCGC	2 cut(s)	825, 1023
Hin1II	CATG	6 cut(s)	125, 172, 328, 375, 931, 1150
Hin6I	GCGC	2 cut(s)	823, 1021
HinP1I	GCGC	2 cut(s)	823, 1021
HinfI	GANTC	5 cut(s)	8, 328, 977, 1217, 1319
HpaII	CCGG	2 cut(s)	114, 443
HphI	GGTGA	1 cut(s)	74
Hpy166II	GTNNAC	1 cut(s)	65
Hpy188I	TCNGA	7 cut(s)	19, 221, 560, 577, 604, 982, 1211
Hpy188III	TCNNGA	5 cut(s)	36, 448, 1030, 1088, 1323
Hpy8I	GTNNAC	1 cut(s)	65
HpyAV	CCTTC	4 cut(s)	24, 848, 1283, 1309
HpyCH4III	ACNGT	4 cut(s)	69, 314, 705, 801
HpyCH4IV	ACGT	1 cut(s)	850
HpyF10VI	GCNNNNNNNGC	9 cut(s)	10, 98, 394, 484, 535, 544, 1018, 1136, 1163
HpyF3I	CTNAG	5 cut(s)	201, 393, 603, 1179, 1311
HpySE526I	ACGT	1 cut(s)	850
Hsp92II	CATG	6 cut(s)	125, 172, 328, 375, 931, 1150
HspAI	GCGC	2 cut(s)	823, 1021
Ksp22I	TGATCA	3 cut(s)	481, 555, 714
Kzo9I	GATC	5 cut(s)	190, 245, 481, 555, 714
LmnI	GCTCC	3 cut(s)	424, 1028, 1120
Lsp1109I	GCAGC	6 cut(s)	209, 241, 649, 1090, 1141, 1151
LweI	GCATC	6 cut(s)	396, 534, 571, 1132, 1141, 1153
MaeI	CTAG	5 cut(s)	161, 689, 885, 974, 1158
MaeII	ACGT	1 cut(s)	850
MaeIII	GTNAC	2 cut(s)	445, 1306
MalI	GATC	5 cut(s)	192, 247, 483, 557, 716
MboI	GATC	5 cut(s)	190, 245, 481, 555, 714
MboII	GAAGA	9 cut(s)	110, 297, 502, 634, 935, 943, 971, 1057, 1082
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	2 cut(s)	432, 455
MluCI	AATT	9 cut(s)	293, 493, 761, 891, 936, 1007, 1082, 1204, 1272
MlyI	GAGTC	2 cut(s)	17, 1211
MmeI	TCCRAC	1 cut(s)	42
MseI	TTAA	5 cut(s)	71, 141, 674, 948, 1224
MslI	CAYNNNNRTG	1 cut(s)	370
MspA1I	CMGCKG	3 cut(s)	487, 594, 1142
MspI	CCGG	2 cut(s)	114, 443
MspR9I	CCNGG	3 cut(s)	60, 114, 736
MvaI	CCWGG	2 cut(s)	60, 736
MwoI	GCNNNNNNNGC	9 cut(s)	10, 98, 394, 484, 535, 544, 1018, 1136, 1163
NciI	CCSGG	1 cut(s)	114
NcoI	CCATGG	1 cut(s)	371
NdeII	GATC	5 cut(s)	190, 245, 481, 555, 714
NlaIII	CATG	6 cut(s)	125, 172, 328, 375, 931, 1150
NlaIV	GGNNCC	2 cut(s)	354, 429
NmeAIII	GCCGAG	1 cut(s)	72
NmuCI	GTSAC	2 cut(s)	445, 1306
PasI	CCCWGGG	1 cut(s)	735
PcsI	WCGNNNNNNNCGW	1 cut(s)	1193
PfeI	GAWTC	3 cut(s)	328, 977, 1319
PflMI	CCANNNNNTGG	1 cut(s)	349
PkrI	GCNGC	8 cut(s)	199, 256, 390, 664, 754, 1105, 1141, 1156
PleI	GAGTC	2 cut(s)	16, 1211
PpsI	GAGTC	2 cut(s)	16, 1211
PshBI	ATTAAT	1 cut(s)	1224
Psp6I	CCWGG	2 cut(s)	58, 734
PspGI	CCWGG	2 cut(s)	58, 734
PspN4I	GGNNCC	2 cut(s)	354, 429
PspPI	GGNCC	2 cut(s)	637, 1265
PstI	CTGCAG	3 cut(s)	199, 1108, 1306
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	2 cut(s)	487, 1142
RsaI	GTAC	1 cut(s)	1098
RsaNI	GTAC	1 cut(s)	1097
RseI	CAYNNNNRTG	1 cut(s)	370
SaqAI	TTAA	5 cut(s)	71, 141, 674, 948, 1224
SatI	GCNGC	8 cut(s)	198, 255, 389, 663, 753, 1104, 1140, 1155
Sau3AI	GATC	5 cut(s)	190, 245, 481, 555, 714
Sau96I	GGNCC	2 cut(s)	637, 1265
SchI	GAGTC	2 cut(s)	17, 1211
ScrFI	CCNGG	3 cut(s)	60, 114, 736
SduI	GDGCHC	2 cut(s)	432, 455
SfaNI	GCATC	6 cut(s)	396, 534, 571, 1132, 1141, 1153
SfcI	CTRYAG	3 cut(s)	195, 1104, 1302
SmiMI	CAYNNNNRTG	1 cut(s)	370
SmlI	CTYRAG	2 cut(s)	539, 986
SmoI	CTYRAG	2 cut(s)	539, 986
SpeI	ACTAGT	1 cut(s)	688
Sse9I	AATT	9 cut(s)	293, 493, 761, 891, 936, 1007, 1082, 1204, 1272
SsiI	CCGC	4 cut(s)	389, 594, 752, 830
SspMI	CTAG	5 cut(s)	161, 689, 885, 974, 1158
StyD4I	CCNGG	3 cut(s)	58, 112, 734
StyI	CCWWGG	1 cut(s)	371
TaaI	ACNGT	4 cut(s)	69, 314, 705, 801
TaiI	ACGT	1 cut(s)	853
TaqI	TCGA	2 cut(s)	379, 1187
TaqII	GACCGA	1 cut(s)	1214
TasI	AATT	9 cut(s)	293, 493, 761, 891, 936, 1007, 1082, 1204, 1272
TauI	GCSGC	2 cut(s)	391, 755
TfiI	GAWTC	3 cut(s)	328, 977, 1319
Tru1I	TTAA	5 cut(s)	71, 141, 674, 948, 1224
Tru9I	TTAA	5 cut(s)	71, 141, 674, 948, 1224
TscAI	CASTG	2 cut(s)	660, 1240
TseFI	GTSAC	2 cut(s)	445, 1306
TseI	GCWGC	6 cut(s)	197, 254, 662, 1103, 1139, 1154
Tsp45I	GTSAC	2 cut(s)	445, 1306
TspDTI	ATGAA	7 cut(s)	110, 341, 879, 888, 944, 1058, 1302
TspRI	CASTG	2 cut(s)	660, 1240
Van91I	CCANNNNNTGG	1 cut(s)	349
VspI	ATTAAT	1 cut(s)	1224
XapI	RAATTY	4 cut(s)	293, 493, 1082, 1204
XcmI	CCANNNNNNNNNTGG	2 cut(s)	421, 916
XspI	CTAG	5 cut(s)	161, 689, 885, 974, 1158

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.