Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

48507736 .. 48510516

Gene Structure 2781 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG268900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1266 bp

ATGTCAAATGTAATGAAAAGAGATCCTGCAGCTCAGTTCCTCATTATAATCAGAAGCAAGATAAATAGAAGAATGGAATTTGTATTCGCAACTCACAGTTTGGTAGCCATGAATCCAAATCCATACCAACCTATGGCACCTCCACCTCCATGGCCTCGAATGTTGCCGCCTAACCCTCCAATGATGCCTCCCAACGCTCCTATGGTGCCCCCCAACCCTCCGGTCACAAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATCAGAGATGTGGAAGCTGCAAACTCTTTAATGGCTAAACTACGAGTTGAGCTTGAACCGTTTAGAGTGATCACGCACGAAATGTGTCCCTGGGAGGAAAAATCTGCGGCTGTCCAATTATCCAATAAGATATGCAAGTCCAAGAGGAATAAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACAGTATTGATTGTTGAGAAATTGCAAGAGTTGCGCTCCATCAGGATTGAAAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACAACCGAGAATTTCAGACCTGACTCTATTAATCAAAGCAGTGCTATAGGCGAGAGTAAGGAAAGTAAAGGCCCGACAATTCTAAGCACTAATGAAGGCAACTCTACTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTACAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTATTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCGGATACCAGGACACTGGGTGCAACCTCCACCTCCTGCAGATGATATCTGGGCCTCCTACCTTCTGCAACCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

421

Amino Acids

48.2

Weight (kDa)

8.9

Isoelectric Point (pI)

57.34

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	345 - 417	2.9e-11	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	47
AccB1I	GGYRCC	3 cut(s)	136, 205, 1133
AccB7I	CCANNNNNTGG	1 cut(s)	133
AciI	CCGC	4 cut(s)	167, 246, 440, 518
AclWI	GGATC	1 cut(s)	17
AcsI	RAATTY	6 cut(s)	77, 271, 785, 907, 1081, 1094
AcuI	CTGAAG	1 cut(s)	287
AdeI	CACNNNGTG	1 cut(s)	1207
AfaI	GTAC	1 cut(s)	801
AfiI	CCNNNNNNNGG	3 cut(s)	133, 775, 1144
AgsI	TTSAA	3 cut(s)	389, 740, 794
AjnI	CCWGG	3 cut(s)	422, 1177, 1195
AloI	GAACNNNNNNTCC	2 cut(s)	1020, 1052
Alw26I	GTCTC	3 cut(s)	236, 664, 683
AlwI	GGATC	1 cut(s)	17
AoxI	GGCC	4 cut(s)	152, 757, 967, 1239
ApeKI	GCWGC	6 cut(s)	29, 350, 806, 842, 857, 1116
ApoI	RAATTY	6 cut(s)	77, 271, 785, 907, 1081, 1094
AseI	ATTAAT	1 cut(s)	927
AspLEI	GCGC	2 cut(s)	513, 726
AspS9I	GGNCC	2 cut(s)	968, 1239
AsuHPI	GGTGA	1 cut(s)	1159
BaeGI	GKGCMC	2 cut(s)	210, 1136
BanI	GGYRCC	3 cut(s)	136, 205, 1133
BbsI	GAAGAC	1 cut(s)	630
BbvI	GCAGC	6 cut(s)	41, 337, 793, 844, 854, 1128
BccI	CCATC	2 cut(s)	613, 737
BciT130I	CCWGG	3 cut(s)	424, 1179, 1197
BciVI	GTATCC	1 cut(s)	1185
BclI	TGATCA	3 cut(s)	259, 333, 402
BcoDI	GTCTC	3 cut(s)	236, 664, 683
BfaI	CTAG	3 cut(s)	585, 674, 861
BfmI	CTRYAG	6 cut(s)	27, 807, 942, 1005, 1040, 1224
BfuI	GTATCC	1 cut(s)	1185
BisI	GCNGC	8 cut(s)	30, 167, 351, 441, 807, 843, 858, 1117
BlpI	GCTNAGC	1 cut(s)	882
BlsI	GCNGC	8 cut(s)	31, 168, 352, 442, 808, 844, 859, 1118
Bme1390I	CCNGG	3 cut(s)	424, 1179, 1197
BmgT120I	GGNCC	2 cut(s)	968, 1239
BmiI	GGNNCC	3 cut(s)	138, 207, 1135
BmrFI	CCNGG	3 cut(s)	424, 1179, 1197
BmrI	ACTGGG	1 cut(s)	1213
BmsI	GCATC	7 cut(s)	174, 312, 835, 844, 856, 1060, 1153
BmuI	ACTGGG	1 cut(s)	1213
BpiI	GAAGAC	1 cut(s)	630
BplI	GAGNNNNNCTC	2 cut(s)	710, 742
Bpu1102I	GCTNAGC	1 cut(s)	882
BpuEI	CTTGAG	2 cut(s)	338, 707
BsaBI	GATNNNNATC	1 cut(s)	332
BsaI	GGTCTC	1 cut(s)	236
BsaJI	CCNNGG	3 cut(s)	149, 422, 423
BsaWI	WCCGGW	1 cut(s)	220
Bsc4I	CCNNNNNNNGG	3 cut(s)	133, 775, 1144
Bse1I	ACTGG	1 cut(s)	1208
Bse3DI	GCAATG	3 cut(s)	309, 513, 870
Bse8I	GATNNNNATC	1 cut(s)	332
BseBI	CCWGG	3 cut(s)	424, 1179, 1197
BseDI	CCNNGG	3 cut(s)	149, 422, 423
BseGI	GGATG	4 cut(s)	784, 859, 871, 1168
BseJI	GATNNNNATC	1 cut(s)	332
BseLI	CCNNNNNNNGG	3 cut(s)	133, 775, 1144
BseMI	GCAATG	3 cut(s)	309, 513, 870
BseMII	CTCAG	2 cut(s)	47, 873
BseNI	ACTGG	1 cut(s)	1208
BseRI	GAGGAG	3 cut(s)	830, 833, 836
BseSI	GKGCMC	2 cut(s)	210, 1136
BseXI	GCAGC	6 cut(s)	41, 337, 793, 844, 854, 1128
BshFI	GGCC	4 cut(s)	154, 759, 969, 1241
BshNI	GGYRCC	3 cut(s)	136, 205, 1133
BsiSI	CCGG	2 cut(s)	221, 1189
BslFI	GGGAC	1 cut(s)	405
BslI	CCNNNNNNNGG	3 cut(s)	133, 775, 1144
BsmAI	GTCTC	3 cut(s)	236, 664, 683
BsmFI	GGGAC	1 cut(s)	405
BsnI	GGCC	4 cut(s)	154, 759, 969, 1241
Bso31I	GGTCTC	1 cut(s)	236
Bsp1286I	GDGCHC	2 cut(s)	210, 1136
Bsp143I	GATC	5 cut(s)	22, 259, 333, 402, 559
Bsp1720I	GCTNAGC	1 cut(s)	882
Bsp19I	CCATGG	1 cut(s)	149
BspACI	CCGC	4 cut(s)	167, 246, 440, 518
BspANI	GGCC	4 cut(s)	154, 759, 969, 1241
BspCNI	CTCAG	2 cut(s)	46, 874
BspLI	GGNNCC	3 cut(s)	138, 207, 1135
BspMAI	CTGCAG	4 cut(s)	31, 811, 1009, 1228
BspPI	GGATC	1 cut(s)	17
BspT107I	GGYRCC	3 cut(s)	136, 205, 1133
BspTNI	GGTCTC	1 cut(s)	236
BsrDI	GCAATG	3 cut(s)	309, 513, 870
BsrI	ACTGG	1 cut(s)	1208
BssECI	CCNNGG	3 cut(s)	149, 422, 423
BssMI	GATC	5 cut(s)	22, 259, 333, 402, 559
BssT1I	CCWWGG	1 cut(s)	149
Bst2UI	CCWGG	3 cut(s)	424, 1179, 1197
Bst4CI	ACNGT	5 cut(s)	98, 393, 489, 694, 1058
Bst6I	CTCTTC	2 cut(s)	654, 768
BstAPI	GCANNNNNTGC	1 cut(s)	721
BstC8I	GCNNGC	1 cut(s)	643
BstDEI	CTNAG	3 cut(s)	33, 882, 980
BstDSI	CCRYGG	1 cut(s)	149
BstENI	CCTNNNNNAGG	1 cut(s)	1142
BstF5I	GGATG	4 cut(s)	784, 859, 871, 1168
BstHHI	GCGC	2 cut(s)	513, 726
BstKTI	GATC	5 cut(s)	25, 262, 336, 405, 562
BstMAI	GTCTC	3 cut(s)	236, 664, 683
BstMBI	GATC	5 cut(s)	22, 259, 333, 402, 559
BstMWI	GCNNNNNNNGC	7 cut(s)	262, 313, 322, 721, 839, 866, 1070
BstNI	CCWGG	3 cut(s)	424, 1179, 1197
BstSCI	CCNGG	3 cut(s)	422, 1177, 1195
BstSFI	CTRYAG	6 cut(s)	27, 807, 942, 1005, 1040, 1224
BstSLI	GKGCMC	2 cut(s)	210, 1136
BstV1I	GCAGC	6 cut(s)	41, 337, 793, 844, 854, 1128
BstV2I	GAAGAC	1 cut(s)	630
BstX2I	RGATCY	1 cut(s)	22
BstXI	CCANNNNNNTGG	2 cut(s)	150, 1203
BstYI	RGATCY	1 cut(s)	22
BsuI	GTATCC	1 cut(s)	1185
BsuRI	GGCC	4 cut(s)	154, 759, 969, 1241
BtgI	CCRYGG	1 cut(s)	149
BtsCI	GGATG	4 cut(s)	784, 859, 871, 1168
BtsI	GCAGTG	1 cut(s)	943
BtsIMutI	CAGTG	3 cut(s)	943, 1063, 1201
Cac8I	GCNNGC	1 cut(s)	643
CfoI	GCGC	2 cut(s)	513, 726
Cfr13I	GGNCC	2 cut(s)	968, 1239
Csp6I	GTAC	1 cut(s)	800
CviAII	CATG	6 cut(s)	109, 150, 628, 850, 1112, 1158
CviQI	GTAC	1 cut(s)	800
DdeI	CTNAG	3 cut(s)	33, 882, 980
DpnI	GATC	5 cut(s)	24, 261, 335, 404, 561
DpnII	GATC	5 cut(s)	22, 259, 333, 402, 559
DraIII	CACNNNGTG	1 cut(s)	1207
Eam1104I	CTCTTC	2 cut(s)	654, 768
EarI	CTCTTC	2 cut(s)	654, 768
Eco130I	CCWWGG	1 cut(s)	149
Eco31I	GGTCTC	1 cut(s)	236
Eco32I	GATATC	1 cut(s)	1234
Eco57I	CTGAAG	1 cut(s)	287
EcoNI	CCTNNNNNAGG	1 cut(s)	1142
EcoRII	CCWGG	3 cut(s)	422, 1177, 1195
EcoRV	GATATC	1 cut(s)	1234
EcoT14I	CCWWGG	1 cut(s)	149
ErhI	CCWWGG	1 cut(s)	149
FaeI	CATG	6 cut(s)	112, 153, 631, 853, 1115, 1161
FaqI	GGGAC	1 cut(s)	405
FatI	CATG	6 cut(s)	108, 149, 627, 849, 1111, 1157
FbaI	TGATCA	3 cut(s)	259, 333, 402
Fnu4HI	GCNGC	8 cut(s)	30, 167, 351, 441, 807, 843, 858, 1117
FokI	GGATG	4 cut(s)	791, 866, 878, 1175
Fsp4HI	GCNGC	8 cut(s)	30, 167, 351, 441, 807, 843, 858, 1117
FspBI	CTAG	3 cut(s)	585, 674, 861
GlaI	GCGC	2 cut(s)	512, 725
GluI	GCNGC	8 cut(s)	30, 167, 351, 441, 807, 843, 858, 1117
HaeIII	GGCC	4 cut(s)	154, 759, 969, 1241
HapII	CCGG	2 cut(s)	221, 1189
HhaI	GCGC	2 cut(s)	513, 726
Hin1II	CATG	6 cut(s)	112, 153, 631, 853, 1115, 1161
Hin6I	GCGC	2 cut(s)	511, 724
HinP1I	GCGC	2 cut(s)	511, 724
HinfI	GANTC	4 cut(s)	112, 677, 920, 1022
HpaII	CCGG	2 cut(s)	221, 1189
HphI	GGTGA	1 cut(s)	1159
Hpy188I	TCNGA	4 cut(s)	53, 338, 682, 914
Hpy188III	TCNNGA	4 cut(s)	563, 733, 791, 1026
HpyAV	CCTTC	3 cut(s)	536, 986, 1259
HpyCH4III	ACNGT	5 cut(s)	98, 393, 489, 694, 1058
HpyCH4IV	ACGT	1 cut(s)	538
HpyF10VI	GCNNNNNNNGC	7 cut(s)	262, 313, 322, 721, 839, 866, 1070
HpyF3I	CTNAG	3 cut(s)	33, 882, 980
HpySE526I	ACGT	1 cut(s)	538
Hsp92II	CATG	6 cut(s)	112, 153, 631, 853, 1115, 1161
HspAI	GCGC	2 cut(s)	511, 724
Ksp22I	TGATCA	3 cut(s)	259, 333, 402
Kzo9I	GATC	5 cut(s)	22, 259, 333, 402, 559
LmnI	GCTCC	4 cut(s)	202, 731, 823, 1061
Lsp1109I	GCAGC	6 cut(s)	41, 337, 793, 844, 854, 1128
LweI	GCATC	7 cut(s)	174, 312, 835, 844, 856, 1060, 1153
MaeI	CTAG	3 cut(s)	585, 674, 861
MaeII	ACGT	1 cut(s)	538
MaeIII	GTNAC	3 cut(s)	223, 1009, 1052
MalI	GATC	5 cut(s)	24, 261, 335, 404, 561
MboI	GATC	5 cut(s)	22, 259, 333, 402, 559
MboII	GAAGA	8 cut(s)	81, 280, 635, 643, 671, 760, 785, 1164
MflI	RGATCY	1 cut(s)	22
MhlI	GDGCHC	2 cut(s)	210, 1136
MlyI	GAGTC	1 cut(s)	914
MseI	TTAA	3 cut(s)	362, 648, 927
MslI	CAYNNNNRTG	1 cut(s)	148
MspA1I	CMGCKG	2 cut(s)	265, 845
MspI	CCGG	2 cut(s)	221, 1189
MspR9I	CCNGG	3 cut(s)	424, 1179, 1197
MvaI	CCWGG	3 cut(s)	424, 1179, 1197
MwoI	GCNNNNNNNGC	7 cut(s)	262, 313, 322, 721, 839, 866, 1070
NcoI	CCATGG	1 cut(s)	149
NdeII	GATC	5 cut(s)	22, 259, 333, 402, 559
NlaIII	CATG	6 cut(s)	112, 153, 631, 853, 1115, 1161
NlaIV	GGNNCC	3 cut(s)	138, 207, 1135
NmuCI	GTSAC	2 cut(s)	223, 1009
PasI	CCCWGGG	1 cut(s)	423
PfeI	GAWTC	3 cut(s)	112, 677, 1022
PflMI	CCANNNNNTGG	1 cut(s)	133
PkrI	GCNGC	8 cut(s)	31, 168, 352, 442, 808, 844, 859, 1118
PleI	GAGTC	1 cut(s)	914
PpsI	GAGTC	1 cut(s)	914
PshBI	ATTAAT	1 cut(s)	927
PsiI	TTATAA	1 cut(s)	47
Psp6I	CCWGG	3 cut(s)	422, 1177, 1195
PspGI	CCWGG	3 cut(s)	422, 1177, 1195
PspN4I	GGNNCC	3 cut(s)	138, 207, 1135
PspPI	GGNCC	2 cut(s)	968, 1239
PstI	CTGCAG	4 cut(s)	31, 811, 1009, 1228
PsuI	RGATCY	1 cut(s)	22
PvuII	CAGCTG	2 cut(s)	265, 845
RsaI	GTAC	1 cut(s)	801
RsaNI	GTAC	1 cut(s)	800
RseI	CAYNNNNRTG	1 cut(s)	148
SaqAI	TTAA	3 cut(s)	362, 648, 927
SatI	GCNGC	8 cut(s)	30, 167, 351, 441, 807, 843, 858, 1117
Sau3AI	GATC	5 cut(s)	22, 259, 333, 402, 559
Sau96I	GGNCC	2 cut(s)	968, 1239
SchI	GAGTC	1 cut(s)	914
ScrFI	CCNGG	3 cut(s)	424, 1179, 1197
SduI	GDGCHC	2 cut(s)	210, 1136
SfaNI	GCATC	7 cut(s)	174, 312, 835, 844, 856, 1060, 1153
SfcI	CTRYAG	6 cut(s)	27, 807, 942, 1005, 1040, 1224
SmiMI	CAYNNNNRTG	1 cut(s)	148
SmlI	CTYRAG	2 cut(s)	317, 686
SmoI	CTYRAG	2 cut(s)	317, 686
SsiI	CCGC	4 cut(s)	167, 246, 440, 518
SspMI	CTAG	3 cut(s)	585, 674, 861
StyD4I	CCNGG	3 cut(s)	422, 1177, 1195
StyI	CCWWGG	1 cut(s)	149
TaaI	ACNGT	5 cut(s)	98, 393, 489, 694, 1058
TaiI	ACGT	1 cut(s)	541
TaqI	TCGA	3 cut(s)	157, 562, 890
TauI	GCSGC	2 cut(s)	169, 443
TfiI	GAWTC	3 cut(s)	112, 677, 1022
Tru1I	TTAA	3 cut(s)	362, 648, 927
Tru9I	TTAA	3 cut(s)	362, 648, 927
TscAI	CASTG	3 cut(s)	943, 1063, 1208
TseFI	GTSAC	2 cut(s)	223, 1009
TseI	GCWGC	6 cut(s)	29, 350, 806, 842, 857, 1116
Tsp45I	GTSAC	2 cut(s)	223, 1009
TspDTI	ATGAA	7 cut(s)	29, 125, 567, 588, 644, 761, 1005
TspRI	CASTG	3 cut(s)	943, 1063, 1208
Van91I	CCANNNNNTGG	1 cut(s)	133
VspI	ATTAAT	1 cut(s)	927
XagI	CCTNNNNNAGG	1 cut(s)	1142
XapI	RAATTY	6 cut(s)	77, 271, 785, 907, 1081, 1094
XcmI	CCANNNNNNNNNTGG	2 cut(s)	199, 616
XspI	CTAG	3 cut(s)	585, 674, 861

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.