Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

13439967 .. 13443389

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1299 bp

ATGAATCCAAATCACTACCAACCTACATCTCCCTGGCCTCCAATGATTCCCCCCAATGCTCCTATGATGCCACCCAACACTCCTAGGATGCCCCCTAATACTCCTATGATGCCACCCAATATTCCTATGATGCCACCCAATGCTCCTATGGTGCCGCCCAACCCTCCGGTGACGAGTACTTTCTGGGAGACCACGAATGTGCGTGAGCAGCTCAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTAGTTAAAGATGGTCAAGAGTCTGGTGATGAGGCTACTGTGAGTCGGTTTGATGAGTTTTTGAGAGATAGGAAGATCGATTTGGAGTCCCAAGTGTTGCGATCAGTGGAAGCTGCAAACTCAGTAATGGCTAAACTACGAGTTGAGATTGAACCGTTTAGATCGATCACGCATGAAATGTGTCCCTGGGAGGAAAAATCTGCGGCTGTCAGATTATCCAATAAGATATGCAAGTCCAAGAGGAATAAAGGTTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGATTTGATGAAGCTGATCGCAAAGCTGATGAATGGAGAGCTAGGGAAATTGCTCAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACGGTATTGATCGTTGAGAAATTGCAAGAATTGCGCTCTATCAGGATTGAAAAAATGAAGAAACAAGGCCATTTGCTCCCAAAAGAGAATGATAAATTTGTTGAAAGAGTACAAGCTAGAGTTGAGGAGGAGGATCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGACGCCATTGCAACTGCTGAGAAATCAAGAAACACAACCGAGAATTTCAGACCGGACTCCATAAACAATAATAAAGGCGAGAATGAGGAAAGTAAAGGCCAGACAATTCAAAGCATTAATGAAAGCGAGTCTACTGCAATTGCTAACAAGGAATCTGGAAAACAAGTTCTACAACGAGAGGGTGTTAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTACTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCGGATACCAGGACACTGGGTTCAACCTCCACCTCCTGCAGATGATATCTGGGCGTCTTACCTTCTGCAACCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

433

Amino Acids

49.48

Weight (kDa)

7.72

Isoelectric Point (pI)

61.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	148 - 428	2e-16	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	151, 1166
AccI	GTMKAC	1 cut(s)	1034
AciI	CCGC	3 cut(s)	155, 479, 557
AclWI	GGATC	1 cut(s)	870
AcsI	RAATTY	5 cut(s)	217, 824, 946, 1114, 1127
AcyI	GRCGYC	2 cut(s)	906, 1274
AfaI	GTAC	2 cut(s)	178, 840
AfiI	CCNNNNNNNGG	1 cut(s)	1177
AgsI	TTSAA	5 cut(s)	428, 779, 833, 1013, 1244
AjnI	CCWGG	4 cut(s)	32, 461, 1210, 1228
AjuI	GAANNNNNNNTTGG	2 cut(s)	341, 373
AleI	CACNNNNGTG	1 cut(s)	197
AloI	GAACNNNNNNTCC	4 cut(s)	1053, 1085, 1224, 1256
Alw26I	GTCTC	3 cut(s)	182, 703, 722
AlwI	GGATC	1 cut(s)	870
AoxI	GGCC	3 cut(s)	35, 796, 1000
ApeKI	GCWGC	5 cut(s)	208, 389, 881, 896, 1149
ApoI	RAATTY	5 cut(s)	217, 824, 946, 1114, 1127
AseI	ATTAAT	1 cut(s)	1020
AspA2I	CCTAGG	1 cut(s)	83
AspLEI	GCGC	2 cut(s)	552, 765
AsuHPI	GGTGA	3 cut(s)	181, 314, 1192
AvrII	CCTAGG	1 cut(s)	83
BaeGI	GKGCMC	1 cut(s)	1169
BanI	GGYRCC	2 cut(s)	151, 1166
BbsI	GAAGAC	1 cut(s)	669
BbvI	GCAGC	5 cut(s)	220, 376, 883, 893, 1161
BccI	CCATC	2 cut(s)	281, 652
BcgI	CGANNNNNNTGC	2 cut(s)	1019, 1053
BciT130I	CCWGG	4 cut(s)	34, 463, 1212, 1230
BciVI	GTATCC	1 cut(s)	1218
BcoDI	GTCTC	3 cut(s)	182, 703, 722
BfaI	CTAG	5 cut(s)	84, 624, 713, 846, 900
BfmI	CTRYAG	1 cut(s)	1257
BfuI	GTATCC	1 cut(s)	1218
BisI	GCNGC	7 cut(s)	155, 209, 390, 480, 882, 897, 1150
BlnI	CCTAGG	1 cut(s)	83
BlsI	GCNGC	7 cut(s)	156, 210, 391, 481, 883, 898, 1151
BmcAI	AGTACT	1 cut(s)	178
Bme1390I	CCNGG	4 cut(s)	34, 463, 1212, 1230
BmiI	GGNNCC	2 cut(s)	153, 1168
BmrFI	CCNGG	4 cut(s)	34, 463, 1212, 1230
BmrI	ACTGGG	1 cut(s)	1246
BmsI	GCATC	8 cut(s)	57, 78, 99, 120, 258, 883, 1093, 1186
BmuI	ACTGGG	1 cut(s)	1246
BpiI	GAAGAC	1 cut(s)	669
Bpu10I	CCTNAGC	1 cut(s)	636
BpuEI	CTTGAG	3 cut(s)	197, 284, 746
Bsa29I	ATCGAT	2 cut(s)	354, 440
BsaHI	GRCGYC	2 cut(s)	906, 1274
BsaI	GGTCTC	1 cut(s)	182
BsaJI	CCNNGG	4 cut(s)	32, 83, 461, 462
BsaWI	WCCGGW	2 cut(s)	166, 955
Bsc4I	CCNNNNNNNGG	1 cut(s)	1177
Bse1I	ACTGG	1 cut(s)	1241
Bse3DI	GCAATG	3 cut(s)	255, 552, 909
BseBI	CCWGG	4 cut(s)	34, 463, 1212, 1230
BseCI	ATCGAT	2 cut(s)	354, 440
BseDI	CCNNGG	4 cut(s)	32, 83, 461, 462
BseGI	GGATG	3 cut(s)	93, 898, 1201
BseLI	CCNNNNNNNGG	1 cut(s)	1177
BseMI	GCAATG	3 cut(s)	255, 552, 909
BseMII	CTCAG	3 cut(s)	411, 650, 912
BseNI	ACTGG	1 cut(s)	1241
BseRI	GAGGAG	2 cut(s)	869, 872
BseSI	GKGCMC	1 cut(s)	1169
BseXI	GCAGC	5 cut(s)	220, 376, 883, 893, 1161
BshFI	GGCC	3 cut(s)	37, 798, 1002
BshNI	GGYRCC	2 cut(s)	151, 1166
BshVI	ATCGAT	2 cut(s)	354, 440
BsiSI	CCGG	3 cut(s)	167, 956, 1222
BslFI	GGGAC	3 cut(s)	349, 444, 917
BslI	CCNNNNNNNGG	1 cut(s)	1177
BsmAI	GTCTC	3 cut(s)	182, 703, 722
BsmBI	CGTCTC	1 cut(s)	722
BsmFI	GGGAC	3 cut(s)	349, 444, 917
BsnI	GGCC	3 cut(s)	37, 798, 1002
Bso31I	GGTCTC	1 cut(s)	182
Bsp1286I	GDGCHC	1 cut(s)	1169
Bsp143I	GATC	7 cut(s)	351, 377, 437, 441, 598, 738, 862
BspACI	CCGC	3 cut(s)	155, 479, 557
BspANI	GGCC	3 cut(s)	37, 798, 1002
BspCNI	CTCAG	3 cut(s)	410, 649, 913
BspDI	ATCGAT	2 cut(s)	354, 440
BspLI	GGNNCC	2 cut(s)	153, 1168
BspMAI	CTGCAG	1 cut(s)	1261
BspPI	GGATC	1 cut(s)	870
BspT107I	GGYRCC	2 cut(s)	151, 1166
BspTNI	GGTCTC	1 cut(s)	182
BsrDI	GCAATG	3 cut(s)	255, 552, 909
BsrI	ACTGG	1 cut(s)	1241
BssECI	CCNNGG	4 cut(s)	32, 83, 461, 462
BssMI	GATC	7 cut(s)	351, 377, 437, 441, 598, 738, 862
BssNI	GRCGYC	2 cut(s)	906, 1274
BssT1I	CCWWGG	1 cut(s)	83
Bst2UI	CCWGG	4 cut(s)	34, 463, 1212, 1230
Bst4CI	ACNGT	3 cut(s)	316, 432, 733
Bst6I	CTCTTC	1 cut(s)	693
BstACI	GRCGYC	2 cut(s)	906, 1274
BstAPI	GCANNNNNTGC	1 cut(s)	760
BstC8I	GCNNGC	1 cut(s)	682
BstDEI	CTNAG	3 cut(s)	397, 636, 921
BstENI	CCTNNNNNAGG	1 cut(s)	1175
BstF5I	GGATG	3 cut(s)	93, 898, 1201
BstHHI	GCGC	2 cut(s)	552, 765
BstKTI	GATC	7 cut(s)	354, 380, 440, 444, 601, 741, 865
BstMAI	GTCTC	3 cut(s)	182, 703, 722
BstMBI	GATC	7 cut(s)	351, 377, 437, 441, 598, 738, 862
BstMWI	GCNNNNNNNGC	7 cut(s)	208, 259, 268, 760, 878, 905, 1103
BstNI	CCWGG	4 cut(s)	34, 463, 1212, 1230
BstSCI	CCNGG	4 cut(s)	32, 461, 1210, 1228
BstSFI	CTRYAG	1 cut(s)	1257
BstSLI	GKGCMC	1 cut(s)	1169
BstV1I	GCAGC	5 cut(s)	220, 376, 883, 893, 1161
BstV2I	GAAGAC	1 cut(s)	669
BstXI	CCANNNNNNTGG	1 cut(s)	1236
Bsu15I	ATCGAT	2 cut(s)	354, 440
BsuI	GTATCC	1 cut(s)	1218
BsuRI	GGCC	3 cut(s)	37, 798, 1002
BsuTUI	ATCGAT	2 cut(s)	354, 440
BtsCI	GGATG	3 cut(s)	93, 898, 1201
BtsIMutI	CAGTG	2 cut(s)	387, 1234
Cac8I	GCNNGC	1 cut(s)	682
CfoI	GCGC	2 cut(s)	552, 765
ClaI	ATCGAT	2 cut(s)	354, 440
CseI	GACGC	2 cut(s)	914, 1263
Csp6I	GTAC	2 cut(s)	177, 839
CviAII	CATG	5 cut(s)	449, 667, 889, 1145, 1191
CviQI	GTAC	2 cut(s)	177, 839
DdeI	CTNAG	3 cut(s)	397, 636, 921
DpnI	GATC	7 cut(s)	353, 379, 439, 443, 600, 740, 864
DpnII	GATC	7 cut(s)	351, 377, 437, 441, 598, 738, 862
Eam1104I	CTCTTC	1 cut(s)	693
EarI	CTCTTC	1 cut(s)	693
Eco130I	CCWWGG	1 cut(s)	83
Eco31I	GGTCTC	1 cut(s)	182
Eco32I	GATATC	1 cut(s)	1267
EcoNI	CCTNNNNNAGG	1 cut(s)	1175
EcoRII	CCWGG	4 cut(s)	32, 461, 1210, 1228
EcoRV	GATATC	1 cut(s)	1267
EcoT14I	CCWWGG	1 cut(s)	83
ErhI	CCWWGG	1 cut(s)	83
Esp3I	CGTCTC	1 cut(s)	722
FaeI	CATG	5 cut(s)	452, 670, 892, 1148, 1194
FaqI	GGGAC	3 cut(s)	349, 444, 917
FatI	CATG	5 cut(s)	448, 666, 888, 1144, 1190
FblI	GTMKAC	1 cut(s)	1034
Fnu4HI	GCNGC	7 cut(s)	155, 209, 390, 480, 882, 897, 1150
FokI	GGATG	3 cut(s)	100, 905, 1208
Fsp4HI	GCNGC	7 cut(s)	155, 209, 390, 480, 882, 897, 1150
FspBI	CTAG	5 cut(s)	84, 624, 713, 846, 900
GlaI	GCGC	2 cut(s)	551, 764
GluI	GCNGC	7 cut(s)	155, 209, 390, 480, 882, 897, 1150
HaeIII	GGCC	3 cut(s)	37, 798, 1002
HapII	CCGG	3 cut(s)	167, 956, 1222
HgaI	GACGC	2 cut(s)	914, 1263
HhaI	GCGC	2 cut(s)	552, 765
Hin1I	GRCGYC	2 cut(s)	906, 1274
Hin1II	CATG	5 cut(s)	452, 670, 892, 1148, 1194
Hin6I	GCGC	2 cut(s)	550, 763
HinP1I	GCGC	2 cut(s)	550, 763
HinfI	GANTC	9 cut(s)	4, 46, 296, 319, 362, 716, 959, 1031, 1055
HpaII	CCGG	3 cut(s)	167, 956, 1222
HphI	GGTGA	3 cut(s)	181, 314, 1192
Hpy166II	GTNNAC	1 cut(s)	1035
Hpy188I	TCNGA	3 cut(s)	488, 721, 953
Hpy188III	TCNNGA	6 cut(s)	214, 293, 638, 772, 930, 1059
Hpy8I	GTNNAC	1 cut(s)	1035
HpyAV	CCTTC	2 cut(s)	575, 1292
HpyCH4III	ACNGT	3 cut(s)	316, 432, 733
HpyCH4IV	ACGT	1 cut(s)	577
HpyF10VI	GCNNNNNNNGC	7 cut(s)	208, 259, 268, 760, 878, 905, 1103
HpyF3I	CTNAG	3 cut(s)	397, 636, 921
HpySE526I	ACGT	1 cut(s)	577
Hsp92I	GRCGYC	2 cut(s)	906, 1274
Hsp92II	CATG	5 cut(s)	452, 670, 892, 1148, 1194
HspAI	GCGC	2 cut(s)	550, 763
Kzo9I	GATC	7 cut(s)	351, 377, 437, 441, 598, 738, 862
LmnI	GCTCC	4 cut(s)	64, 148, 810, 1094
Lsp1109I	GCAGC	5 cut(s)	220, 376, 883, 893, 1161
LweI	GCATC	8 cut(s)	57, 78, 99, 120, 258, 883, 1093, 1186
MaeI	CTAG	5 cut(s)	84, 624, 713, 846, 900
MaeII	ACGT	1 cut(s)	577
MaeIII	GTNAC	1 cut(s)	169
MalI	GATC	7 cut(s)	353, 379, 439, 443, 600, 740, 864
MboI	GATC	7 cut(s)	351, 377, 437, 441, 598, 738, 862
MboII	GAAGA	6 cut(s)	361, 674, 682, 710, 799, 1197
MfeI	CAATTG	1 cut(s)	1041
MhlI	GDGCHC	1 cut(s)	1169
MlyI	GAGTC	5 cut(s)	305, 328, 371, 953, 1040
MmeI	TCCRAC	1 cut(s)	509
MseI	TTAA	3 cut(s)	282, 687, 1020
MslI	CAYNNNNRTG	1 cut(s)	197
MspA1I	CMGCKG	1 cut(s)	884
MspI	CCGG	3 cut(s)	167, 956, 1222
MspR9I	CCNGG	4 cut(s)	34, 463, 1212, 1230
MunI	CAATTG	1 cut(s)	1041
MvaI	CCWGG	4 cut(s)	34, 463, 1212, 1230
MwoI	GCNNNNNNNGC	7 cut(s)	208, 259, 268, 760, 878, 905, 1103
NdeII	GATC	7 cut(s)	351, 377, 437, 441, 598, 738, 862
NlaIII	CATG	5 cut(s)	452, 670, 892, 1148, 1194
NlaIV	GGNNCC	2 cut(s)	153, 1168
NmuCI	GTSAC	1 cut(s)	169
OliI	CACNNNNGTG	1 cut(s)	197
PasI	CCCWGGG	1 cut(s)	462
PfeI	GAWTC	4 cut(s)	4, 46, 716, 1055
PkrI	GCNGC	7 cut(s)	156, 210, 391, 481, 883, 898, 1151
PleI	GAGTC	5 cut(s)	304, 327, 370, 953, 1039
PpsI	GAGTC	5 cut(s)	304, 327, 370, 953, 1039
PshBI	ATTAAT	1 cut(s)	1020
Psp6I	CCWGG	4 cut(s)	32, 461, 1210, 1228
PspGI	CCWGG	4 cut(s)	32, 461, 1210, 1228
PspN4I	GGNNCC	2 cut(s)	153, 1168
PstI	CTGCAG	1 cut(s)	1261
PvuII	CAGCTG	1 cut(s)	884
RsaI	GTAC	2 cut(s)	178, 840
RsaNI	GTAC	2 cut(s)	177, 839
RseI	CAYNNNNRTG	1 cut(s)	197
SaqAI	TTAA	3 cut(s)	282, 687, 1020
SatI	GCNGC	7 cut(s)	155, 209, 390, 480, 882, 897, 1150
Sau3AI	GATC	7 cut(s)	351, 377, 437, 441, 598, 738, 862
ScaI	AGTACT	1 cut(s)	178
SchI	GAGTC	5 cut(s)	305, 328, 371, 953, 1040
ScrFI	CCNGG	4 cut(s)	34, 463, 1212, 1230
SduI	GDGCHC	1 cut(s)	1169
SfaNI	GCATC	8 cut(s)	57, 78, 99, 120, 258, 883, 1093, 1186
SfcI	CTRYAG	1 cut(s)	1257
SmiMI	CAYNNNNRTG	1 cut(s)	197
SmlI	CTYRAG	3 cut(s)	212, 263, 725
SmoI	CTYRAG	3 cut(s)	212, 263, 725
SsiI	CCGC	3 cut(s)	155, 479, 557
SspI	AATATT	1 cut(s)	121
SspMI	CTAG	5 cut(s)	84, 624, 713, 846, 900
StyD4I	CCNGG	4 cut(s)	32, 461, 1210, 1228
StyI	CCWWGG	1 cut(s)	83
TaaI	ACNGT	3 cut(s)	316, 432, 733
TaiI	ACGT	1 cut(s)	580
TaqI	TCGA	2 cut(s)	354, 440
TatI	WGTACW	2 cut(s)	176, 838
TauI	GCSGC	2 cut(s)	157, 482
TfiI	GAWTC	4 cut(s)	4, 46, 716, 1055
Tru1I	TTAA	3 cut(s)	282, 687, 1020
Tru9I	TTAA	3 cut(s)	282, 687, 1020
TscAI	CASTG	2 cut(s)	387, 1241
TseFI	GTSAC	1 cut(s)	169
TseI	GCWGC	5 cut(s)	208, 389, 881, 896, 1149
Tsp45I	GTSAC	1 cut(s)	169
TspDTI	ATGAA	7 cut(s)	17, 465, 606, 627, 683, 800, 1038
TspRI	CASTG	2 cut(s)	387, 1241
VspI	ATTAAT	1 cut(s)	1020
XagI	CCTNNNNNAGG	1 cut(s)	1175
XapI	RAATTY	5 cut(s)	217, 824, 946, 1114, 1127
XcmI	CCANNNNNNNNNTGG	2 cut(s)	145, 655
XmaJI	CCTAGG	1 cut(s)	83
XmiI	GTMKAC	1 cut(s)	1034
XspI	CTAG	5 cut(s)	84, 624, 713, 846, 900
ZrmI	AGTACT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.