Rw1G024440

Programmed cell death protein 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0004138
Physical Location & Seq
Reverse (-)
50627356 .. 50629699
2344 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024440.1

Sequence Viewer

Length: 1230 bp
ATGAATCCAAATCCGTACCAACCTATGGCACCTCCATCTCCATGGCCTCGAATGCTGCCGCCTAACCCTCCTATGGTGCCCCCCAACCCTCCGGTGACGAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGCCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATGAAAGATGGTAAGGGGTCTGATGATGATGCTTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAGACAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCTTTAATGGCGAAACTACGAGTTGAGCTTGAACCGTTTAGAGCGATCACGCATGAAATGTGTCCCTGGGAGGAAAAGTCTGCGGCTGTAAGATTATCCAATAAGATATGCAAGTCCAAGAGGAATCAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACAGTATTGATTGTTGAGAAACTGCAAGAGCTGCACTCCATCAGGATTGAGAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAAGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACAAACGAGAATTTCAGACCTGACTCCATTGATCAAAATAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCCCGACAATTCCAAGCACTAGTGAAGGCGACTTTACTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTACAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTACTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCGGATACCAGGACACTGGGTTCAACCTCCACCTCCTGCAGATGATATCTGGGCCTCCTACCTTCTGCAACCTAAATGA

Protein Analysis

409

Amino Acids

46.64

Weight (kDa)

6.11

Isoelectric Point (pI)

49.57

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD7 PF16021 124 - 405 1.1e-15 Programmed cell death protein 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 28, 76, 1097
AccB7I CCANNNNNTGG 1 cut(s) 25
AciI CCGC 5 cut(s) 59, 117, 246, 404, 482
AcsI RAATTY 5 cut(s) 142, 749, 871, 1045, 1058
AcuI CTGAAG 1 cut(s) 158
AfaI GTAC 2 cut(s) 17, 765
AfiI CCNNNNNNNGG 4 cut(s) 25, 73, 739, 1108
AgsI TTSAA 4 cut(s) 265, 353, 758, 1175
AhlI ACTAGT 1 cut(s) 950
AjnI CCWGG 3 cut(s) 386, 1141, 1159
AjuI GAANNNNNNNTTGG 2 cut(s) 266, 298
AloI GAACNNNNNNTCC 4 cut(s) 984, 1016, 1155, 1187
Alw21I GWGCWC 1 cut(s) 104
Alw26I GTCTC 3 cut(s) 107, 628, 647
AoxI GGCC 6 cut(s) 44, 160, 288, 721, 931, 1203
ApeKI GCWGC 7 cut(s) 55, 314, 685, 770, 806, 821, 1080
ApoI RAATTY 5 cut(s) 142, 749, 871, 1045, 1058
AspLEI GCGC 1 cut(s) 477
AspS9I GGNCC 3 cut(s) 289, 932, 1203
AsuHPI GGTGA 2 cut(s) 106, 1123
BaeGI GKGCMC 2 cut(s) 81, 1100
BanI GGYRCC 3 cut(s) 28, 76, 1097
BbsI GAAGAC 1 cut(s) 594
Bbv12I GWGCWC 1 cut(s) 104
BbvI GCAGC 7 cut(s) 42, 301, 672, 757, 808, 818, 1092
BccI CCATC 4 cut(s) 43, 206, 577, 701
BcgI CGANNNNNNTGC 2 cut(s) 950, 984
BciT130I CCWGG 3 cut(s) 388, 1143, 1161
BciVI GTATCC 1 cut(s) 1149
BclI TGATCA 2 cut(s) 130, 892
BcoDI GTCTC 3 cut(s) 107, 628, 647
BcuI ACTAGT 1 cut(s) 950
BfaI CTAG 4 cut(s) 549, 638, 825, 951
BfmI CTRYAG 4 cut(s) 771, 969, 1004, 1188
BfuI GTATCC 1 cut(s) 1149
BisI GCNGC 9 cut(s) 56, 59, 315, 405, 686, 771, 807, 822, 1081
BlpI GCTNAGC 1 cut(s) 846
BlsI GCNGC 9 cut(s) 57, 60, 316, 406, 687, 772, 808, 823, 1082
Bme1390I CCNGG 3 cut(s) 388, 1143, 1161
BmgT120I GGNCC 3 cut(s) 289, 932, 1203
BmiI GGNNCC 3 cut(s) 30, 78, 1099
BmrFI CCNGG 3 cut(s) 388, 1143, 1161
BmrI ACTGGG 1 cut(s) 1177
BmsI GCATC 7 cut(s) 183, 223, 799, 808, 820, 1024, 1117
BmuI ACTGGG 1 cut(s) 1177
BpiI GAAGAC 1 cut(s) 594
BplI GAGNNNNNCTC 2 cut(s) 674, 706
Bpu1102I GCTNAGC 1 cut(s) 846
BpuEI CTTGAG 2 cut(s) 209, 671
BsaI GGTCTC 1 cut(s) 107
BsaJI CCNNGG 3 cut(s) 41, 386, 387
BsaWI WCCGGW 1 cut(s) 91
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 73, 739, 1108
Bse1I ACTGG 1 cut(s) 1172
Bse3DI GCAATG 3 cut(s) 180, 477, 834
BseBI CCWGG 3 cut(s) 388, 1143, 1161
BseDI CCNNGG 3 cut(s) 41, 386, 387
BseGI GGATG 4 cut(s) 748, 823, 835, 1132
BseLI CCNNNNNNNGG 4 cut(s) 25, 73, 739, 1108
BseMI GCAATG 3 cut(s) 180, 477, 834
BseMII CTCAG 2 cut(s) 246, 837
BseNI ACTGG 1 cut(s) 1172
BseRI GAGGAG 1 cut(s) 794
BseSI GKGCMC 2 cut(s) 81, 1100
BseXI GCAGC 7 cut(s) 42, 301, 672, 757, 808, 818, 1092
BsgI GTGCAG 1 cut(s) 671
BshFI GGCC 6 cut(s) 46, 162, 290, 723, 933, 1205
BshNI GGYRCC 3 cut(s) 28, 76, 1097
BsiHKAI GWGCWC 1 cut(s) 104
BsiSI CCGG 2 cut(s) 92, 1153
BslFI GGGAC 1 cut(s) 369
BslI CCNNNNNNNGG 4 cut(s) 25, 73, 739, 1108
BsmAI GTCTC 3 cut(s) 107, 628, 647
BsmFI GGGAC 1 cut(s) 369
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 6 cut(s) 46, 162, 290, 723, 933, 1205
Bso31I GGTCTC 1 cut(s) 107
Bsp1286I GDGCHC 3 cut(s) 81, 104, 1100
Bsp143I GATC 4 cut(s) 130, 366, 523, 892
Bsp1720I GCTNAGC 1 cut(s) 846
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 5 cut(s) 59, 117, 246, 404, 482
BspANI GGCC 6 cut(s) 46, 162, 290, 723, 933, 1205
BspCNI CTCAG 2 cut(s) 247, 838
BspLI GGNNCC 3 cut(s) 30, 78, 1099
BspMAI CTGCAG 3 cut(s) 775, 973, 1192
BspQI GCTCTTC 1 cut(s) 780
BspT107I GGYRCC 3 cut(s) 28, 76, 1097
BspTNI GGTCTC 1 cut(s) 107
BsrDI GCAATG 3 cut(s) 180, 477, 834
BsrI ACTGG 1 cut(s) 1172
BssECI CCNNGG 3 cut(s) 41, 386, 387
BssMI GATC 4 cut(s) 130, 366, 523, 892
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 3 cut(s) 388, 1143, 1161
Bst4CI ACNGT 4 cut(s) 357, 453, 658, 1022
Bst6I CTCTTC 3 cut(s) 618, 732, 780
BstAPI GCANNNNNTGC 1 cut(s) 685
BstC8I GCNNGC 1 cut(s) 607
BstDEI CTNAG 2 cut(s) 255, 846
BstDSI CCRYGG 1 cut(s) 41
BstENI CCTNNNNNAGG 1 cut(s) 1106
BstF5I GGATG 4 cut(s) 748, 823, 835, 1132
BstHHI GCGC 1 cut(s) 477
BstKTI GATC 4 cut(s) 133, 369, 526, 895
BstMAI GTCTC 3 cut(s) 107, 628, 647
BstMBI GATC 4 cut(s) 130, 366, 523, 892
BstMWI GCNNNNNNNGC 8 cut(s) 52, 133, 184, 193, 685, 803, 830, 1034
BstNI CCWGG 3 cut(s) 388, 1143, 1161
BstSCI CCNGG 3 cut(s) 386, 1141, 1159
BstSFI CTRYAG 4 cut(s) 771, 969, 1004, 1188
BstSLI GKGCMC 2 cut(s) 81, 1100
BstV1I GCAGC 7 cut(s) 42, 301, 672, 757, 808, 818, 1092
BstV2I GAAGAC 1 cut(s) 594
BstXI CCANNNNNNTGG 2 cut(s) 42, 1167
BsuI GTATCC 1 cut(s) 1149
BsuRI GGCC 6 cut(s) 46, 162, 290, 723, 933, 1205
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 4 cut(s) 748, 823, 835, 1132
BtsIMutI CAGTG 3 cut(s) 312, 1027, 1165
Cac8I GCNNGC 1 cut(s) 607
CfoI GCGC 1 cut(s) 477
Cfr13I GGNCC 3 cut(s) 289, 932, 1203
Csp6I GTAC 2 cut(s) 16, 764
CviAII CATG 6 cut(s) 42, 374, 592, 814, 1076, 1122
CviQI GTAC 2 cut(s) 16, 764
DdeI CTNAG 2 cut(s) 255, 846
DpnI GATC 4 cut(s) 132, 368, 525, 894
DpnII GATC 4 cut(s) 130, 366, 523, 892
Eam1104I CTCTTC 3 cut(s) 618, 732, 780
EarI CTCTTC 3 cut(s) 618, 732, 780
Eco130I CCWWGG 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 107
Eco32I GATATC 1 cut(s) 1198
Eco57I CTGAAG 1 cut(s) 158
EcoNI CCTNNNNNAGG 1 cut(s) 1106
EcoRII CCWGG 3 cut(s) 386, 1141, 1159
EcoRV GATATC 1 cut(s) 1198
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 6 cut(s) 45, 377, 595, 817, 1079, 1125
FaqI GGGAC 1 cut(s) 369
FatI CATG 6 cut(s) 41, 373, 591, 813, 1075, 1121
FauI CCCGC 1 cut(s) 239
FbaI TGATCA 2 cut(s) 130, 892
Fnu4HI GCNGC 9 cut(s) 56, 59, 315, 405, 686, 771, 807, 822, 1081
FokI GGATG 4 cut(s) 755, 830, 842, 1139
Fsp4HI GCNGC 9 cut(s) 56, 59, 315, 405, 686, 771, 807, 822, 1081
FspBI CTAG 4 cut(s) 549, 638, 825, 951
GlaI GCGC 1 cut(s) 476
GluI GCNGC 9 cut(s) 56, 59, 315, 405, 686, 771, 807, 822, 1081
HaeIII GGCC 6 cut(s) 46, 162, 290, 723, 933, 1205
HapII CCGG 2 cut(s) 92, 1153
HhaI GCGC 1 cut(s) 477
Hin1II CATG 6 cut(s) 45, 377, 595, 817, 1079, 1125
Hin6I GCGC 1 cut(s) 475
HinP1I GCGC 1 cut(s) 475
HinfI GANTC 5 cut(s) 4, 445, 641, 884, 986
HpaII CCGG 2 cut(s) 92, 1153
HphI GGTGA 2 cut(s) 106, 1123
Hpy188I TCNGA 4 cut(s) 226, 256, 646, 878
Hpy188III TCNNGA 4 cut(s) 527, 697, 755, 990
HpyAV CCTTC 3 cut(s) 500, 950, 1223
HpyCH4III ACNGT 4 cut(s) 357, 453, 658, 1022
HpyCH4IV ACGT 1 cut(s) 502
HpyF10VI GCNNNNNNNGC 8 cut(s) 52, 133, 184, 193, 685, 803, 830, 1034
HpyF3I CTNAG 2 cut(s) 255, 846
HpySE526I ACGT 1 cut(s) 502
Hsp92II CATG 6 cut(s) 45, 377, 595, 817, 1079, 1125
HspAI GCGC 1 cut(s) 475
Ksp22I TGATCA 2 cut(s) 130, 892
Kzo9I GATC 4 cut(s) 130, 366, 523, 892
LguI GCTCTTC 1 cut(s) 780
LmnI GCTCC 1 cut(s) 1025
Lsp1109I GCAGC 7 cut(s) 42, 301, 672, 757, 808, 818, 1092
LweI GCATC 7 cut(s) 183, 223, 799, 808, 820, 1024, 1117
MaeI CTAG 4 cut(s) 549, 638, 825, 951
MaeII ACGT 1 cut(s) 502
MaeIII GTNAC 3 cut(s) 94, 973, 1016
MalI GATC 4 cut(s) 132, 368, 525, 894
MboI GATC 4 cut(s) 130, 366, 523, 892
MboII GAAGA 9 cut(s) 151, 286, 599, 607, 635, 724, 749, 797, 1128
MhlI GDGCHC 3 cut(s) 81, 104, 1100
MluCI AATT 8 cut(s) 142, 555, 600, 749, 871, 939, 1045, 1058
MlyI GAGTC 1 cut(s) 878
MseI TTAA 2 cut(s) 326, 612
MslI CAYNNNNRTG 1 cut(s) 40
MspA1I CMGCKG 3 cut(s) 136, 246, 809
MspI CCGG 2 cut(s) 92, 1153
MspR9I CCNGG 3 cut(s) 388, 1143, 1161
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 3 cut(s) 388, 1143, 1161
MwoI GCNNNNNNNGC 8 cut(s) 52, 133, 184, 193, 685, 803, 830, 1034
NcoI CCATGG 1 cut(s) 41
NdeII GATC 4 cut(s) 130, 366, 523, 892
NlaIII CATG 6 cut(s) 45, 377, 595, 817, 1079, 1125
NlaIV GGNNCC 3 cut(s) 30, 78, 1099
NmuCI GTSAC 2 cut(s) 94, 973
PasI CCCWGGG 1 cut(s) 387
PciSI GCTCTTC 1 cut(s) 780
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 4 cut(s) 4, 445, 641, 986
PflMI CCANNNNNTGG 1 cut(s) 25
PkrI GCNGC 9 cut(s) 57, 60, 316, 406, 687, 772, 808, 823, 1082
PleI GAGTC 1 cut(s) 878
PpsI GAGTC 1 cut(s) 878
Psp6I CCWGG 3 cut(s) 386, 1141, 1159
PspGI CCWGG 3 cut(s) 386, 1141, 1159
PspN4I GGNNCC 3 cut(s) 30, 78, 1099
PspPI GGNCC 3 cut(s) 289, 932, 1203
PstI CTGCAG 3 cut(s) 775, 973, 1192
PvuII CAGCTG 2 cut(s) 136, 809
RsaI GTAC 2 cut(s) 17, 765
RsaNI GTAC 2 cut(s) 16, 764
RseI CAYNNNNRTG 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 780
SaqAI TTAA 2 cut(s) 326, 612
SatI GCNGC 9 cut(s) 56, 59, 315, 405, 686, 771, 807, 822, 1081
Sau3AI GATC 4 cut(s) 130, 366, 523, 892
Sau96I GGNCC 3 cut(s) 289, 932, 1203
SchI GAGTC 1 cut(s) 878
ScrFI CCNGG 3 cut(s) 388, 1143, 1161
SduI GDGCHC 3 cut(s) 81, 104, 1100
SfaNI GCATC 7 cut(s) 183, 223, 799, 808, 820, 1024, 1117
SfcI CTRYAG 4 cut(s) 771, 969, 1004, 1188
SmiMI CAYNNNNRTG 1 cut(s) 40
SmlI CTYRAG 2 cut(s) 188, 650
SmoI CTYRAG 2 cut(s) 188, 650
SpeI ACTAGT 1 cut(s) 950
Sse9I AATT 8 cut(s) 142, 555, 600, 749, 871, 939, 1045, 1058
SsiI CCGC 5 cut(s) 59, 117, 246, 404, 482
SspMI CTAG 4 cut(s) 549, 638, 825, 951
StyD4I CCNGG 3 cut(s) 386, 1141, 1159
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 4 cut(s) 357, 453, 658, 1022
TaiI ACGT 1 cut(s) 505
TaqI TCGA 3 cut(s) 49, 526, 854
TasI AATT 8 cut(s) 142, 555, 600, 749, 871, 939, 1045, 1058
TauI GCSGC 2 cut(s) 61, 407
TfiI GAWTC 4 cut(s) 4, 445, 641, 986
Tru1I TTAA 2 cut(s) 326, 612
Tru9I TTAA 2 cut(s) 326, 612
TscAI CASTG 3 cut(s) 312, 1027, 1172
TseFI GTSAC 2 cut(s) 94, 973
TseI GCWGC 7 cut(s) 55, 314, 685, 770, 806, 821, 1080
Tsp45I GTSAC 2 cut(s) 94, 973
TspDTI ATGAA 7 cut(s) 17, 221, 390, 531, 552, 608, 725
TspRI CASTG 3 cut(s) 312, 1027, 1172
Van91I CCANNNNNTGG 1 cut(s) 25
XagI CCTNNNNNAGG 1 cut(s) 1106
XapI RAATTY 5 cut(s) 142, 749, 871, 1045, 1058
XcmI CCANNNNNNNNNTGG 1 cut(s) 580
XspI CTAG 4 cut(s) 549, 638, 825, 951
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.