Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Forward (+)

18238743 .. 18242423

Gene Structure 3681 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00298380.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1248 bp

ATGAATCCAAATCCATACCACCCTATGGCACCTCCACCTCCATGGCCTCGAATGCTGCCGCCTAACCCTCCAATGATGCCGCCCAATGCTCCTATGGTGCCTCCCAACCCTCCGGTGACGAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATGAAAGATGGTAAGGGGTCTGATGATGCTTCTGTCAGTTGGTTTTCTGAGTTTTTGGAAGATAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCTTTAATGGCTAAACTACGAGTTGAGCTTGAACCGTTTAGAGCGATCACGCATGAAATGTGTCCCTGGGAGGAAAAGTCTGCGGCTGTCCAATTATCCAATAAGATATGCAAGTCCAAGAGGAATAAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTCAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACAGTATTGATTGTTGAGAAATTGCAAGAGTTGCGCTCCATCAGGATTGAGAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCAAGGAAAACAACCGAGAATTTCAGACCTGACTCCATTGATCAAAGCAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCGCGACAATTCCAAGCACTAATGAAGGCGACTCTACTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCTCCAGGGAGAGGGTTATAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTACTATCATGGCAGCAATACCGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCGGATACCAGGACACTGGGTTCAACCTCCACCTCCTGCAGATGATATCTGGGCCTCCTACCTTCTGCAACCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

415

Amino Acids

47.31

Weight (kDa)

6.11

Isoelectric Point (pI)

55.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	129 - 411	2.5e-17	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	28, 97, 1115
AccB7I	CCANNNNNTGG	1 cut(s)	25
AccII	CGCG	1 cut(s)	953
AciI	CCGC	5 cut(s)	59, 80, 138, 422, 500
AcsI	RAATTY	5 cut(s)	163, 767, 889, 1063, 1076
AcuI	CTGAAG	1 cut(s)	179
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	4 cut(s)	25, 757, 1030, 1126
AgsI	TTSAA	3 cut(s)	371, 776, 1193
AjnI	CCWGG	4 cut(s)	404, 1023, 1159, 1177
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AloI	GAACNNNNNNTCC	4 cut(s)	1002, 1034, 1173, 1205
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	3 cut(s)	128, 646, 665
AoxI	GGCC	4 cut(s)	44, 306, 739, 1221
ApeKI	GCWGC	6 cut(s)	55, 332, 788, 824, 839, 1098
ApoI	RAATTY	5 cut(s)	163, 767, 889, 1063, 1076
AspLEI	GCGC	3 cut(s)	495, 708, 953
AspS9I	GGNCC	2 cut(s)	307, 1221
AsuHPI	GGTGA	2 cut(s)	127, 1141
BaeGI	GKGCMC	1 cut(s)	1118
BanI	GGYRCC	3 cut(s)	28, 97, 1115
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	6 cut(s)	42, 319, 775, 826, 836, 1110
BccI	CCATC	3 cut(s)	227, 595, 719
BcgI	CGANNNNNNTGC	2 cut(s)	968, 1002
BciT130I	CCWGG	4 cut(s)	406, 1025, 1161, 1179
BciVI	GTATCC	1 cut(s)	1167
BclI	TGATCA	2 cut(s)	151, 910
BcoDI	GTCTC	3 cut(s)	128, 646, 665
BfaI	CTAG	3 cut(s)	567, 656, 843
BfmI	CTRYAG	3 cut(s)	789, 987, 1206
BfuI	GTATCC	1 cut(s)	1167
BisI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
BlpI	GCTNAGC	1 cut(s)	864
BlsI	GCNGC	9 cut(s)	57, 60, 81, 334, 424, 790, 826, 841, 1100
Bme1390I	CCNGG	4 cut(s)	406, 1025, 1161, 1179
BmgT120I	GGNCC	2 cut(s)	307, 1221
BmiI	GGNNCC	3 cut(s)	30, 99, 1117
BmrFI	CCNGG	4 cut(s)	406, 1025, 1161, 1179
BmrI	ACTGGG	1 cut(s)	1195
BmsI	GCATC	8 cut(s)	66, 204, 241, 817, 826, 838, 1042, 1135
BmuI	ACTGGG	1 cut(s)	1195
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	692, 724
BpmI	CTGGAG	1 cut(s)	1007
Bpu1102I	GCTNAGC	1 cut(s)	864
BpuEI	CTTGAG	2 cut(s)	230, 689
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	4 cut(s)	41, 404, 405, 1024
BsaWI	WCCGGW	1 cut(s)	112
BsaXI	ACNNNNNCTCC	4 cut(s)	401, 431, 1005, 1035
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 757, 1030, 1126
Bse1I	ACTGG	1 cut(s)	1190
Bse3DI	GCAATG	3 cut(s)	201, 495, 852
BseBI	CCWGG	4 cut(s)	406, 1025, 1161, 1179
BseDI	CCNNGG	4 cut(s)	41, 404, 405, 1024
BseGI	GGATG	4 cut(s)	766, 841, 853, 1150
BseLI	CCNNNNNNNGG	4 cut(s)	25, 757, 1030, 1126
BseMI	GCAATG	3 cut(s)	201, 495, 852
BseMII	CTCAG	2 cut(s)	264, 855
BseNI	ACTGG	1 cut(s)	1190
BseRI	GAGGAG	3 cut(s)	812, 815, 818
BseSI	GKGCMC	1 cut(s)	1118
BseXI	GCAGC	6 cut(s)	42, 319, 775, 826, 836, 1110
Bsh1236I	CGCG	1 cut(s)	953
BshFI	GGCC	4 cut(s)	46, 308, 741, 1223
BshNI	GGYRCC	3 cut(s)	28, 97, 1115
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	2 cut(s)	113, 1171
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	4 cut(s)	25, 757, 1030, 1126
BsmAI	GTCTC	3 cut(s)	128, 646, 665
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	4 cut(s)	46, 308, 741, 1223
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	2 cut(s)	125, 1118
Bsp143I	GATC	4 cut(s)	151, 384, 541, 910
Bsp1720I	GCTNAGC	1 cut(s)	864
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	5 cut(s)	59, 80, 138, 422, 500
BspANI	GGCC	4 cut(s)	46, 308, 741, 1223
BspCNI	CTCAG	2 cut(s)	265, 856
BspFNI	CGCG	1 cut(s)	953
BspLI	GGNNCC	3 cut(s)	30, 99, 1117
BspMAI	CTGCAG	3 cut(s)	793, 991, 1210
BspT107I	GGYRCC	3 cut(s)	28, 97, 1115
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	3 cut(s)	201, 495, 852
BsrI	ACTGG	1 cut(s)	1190
BssECI	CCNNGG	4 cut(s)	41, 404, 405, 1024
BssMI	GATC	4 cut(s)	151, 384, 541, 910
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	4 cut(s)	406, 1025, 1161, 1179
Bst4CI	ACNGT	3 cut(s)	375, 471, 676
Bst6I	CTCTTC	2 cut(s)	636, 750
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	2 cut(s)	273, 864
BstDSI	CCRYGG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	1124
BstF5I	GGATG	4 cut(s)	766, 841, 853, 1150
BstFNI	CGCG	1 cut(s)	953
BstHHI	GCGC	3 cut(s)	495, 708, 953
BstKTI	GATC	4 cut(s)	154, 387, 544, 913
BstMAI	GTCTC	3 cut(s)	128, 646, 665
BstMBI	GATC	4 cut(s)	151, 384, 541, 910
BstMWI	GCNNNNNNNGC	8 cut(s)	52, 154, 205, 214, 703, 821, 848, 1052
BstNI	CCWGG	4 cut(s)	406, 1025, 1161, 1179
BstSCI	CCNGG	4 cut(s)	404, 1023, 1159, 1177
BstSFI	CTRYAG	3 cut(s)	789, 987, 1206
BstSLI	GKGCMC	1 cut(s)	1118
BstUI	CGCG	1 cut(s)	953
BstV1I	GCAGC	6 cut(s)	42, 319, 775, 826, 836, 1110
BstV2I	GAAGAC	1 cut(s)	612
BstXI	CCANNNNNNTGG	2 cut(s)	42, 1185
BsuI	GTATCC	1 cut(s)	1167
BsuRI	GGCC	4 cut(s)	46, 308, 741, 1223
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	4 cut(s)	766, 841, 853, 1150
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	3 cut(s)	330, 925, 1183
Cac8I	GCNNGC	1 cut(s)	625
CfoI	GCGC	3 cut(s)	495, 708, 953
Cfr13I	GGNCC	2 cut(s)	307, 1221
Csp6I	GTAC	1 cut(s)	782
CviAII	CATG	6 cut(s)	42, 392, 610, 832, 1094, 1140
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	2 cut(s)	273, 864
DpnI	GATC	4 cut(s)	153, 386, 543, 912
DpnII	GATC	4 cut(s)	151, 384, 541, 910
Eam1104I	CTCTTC	2 cut(s)	636, 750
EarI	CTCTTC	2 cut(s)	636, 750
Eco130I	CCWWGG	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	128
Eco32I	GATATC	1 cut(s)	1216
Eco57I	CTGAAG	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	1124
EcoRII	CCWGG	4 cut(s)	404, 1023, 1159, 1177
EcoRV	GATATC	1 cut(s)	1216
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	6 cut(s)	45, 395, 613, 835, 1097, 1143
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	6 cut(s)	41, 391, 609, 831, 1093, 1139
FbaI	TGATCA	2 cut(s)	151, 910
Fnu4HI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
FokI	GGATG	4 cut(s)	773, 848, 860, 1157
Fsp4HI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
FspBI	CTAG	3 cut(s)	567, 656, 843
GlaI	GCGC	3 cut(s)	494, 707, 952
GluI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
GsuI	CTGGAG	1 cut(s)	1007
HaeIII	GGCC	4 cut(s)	46, 308, 741, 1223
HapII	CCGG	2 cut(s)	113, 1171
HhaI	GCGC	3 cut(s)	495, 708, 953
Hin1II	CATG	6 cut(s)	45, 395, 613, 835, 1097, 1143
Hin6I	GCGC	3 cut(s)	493, 706, 951
HinP1I	GCGC	3 cut(s)	493, 706, 951
HinfI	GANTC	5 cut(s)	4, 659, 902, 980, 1004
HpaII	CCGG	2 cut(s)	113, 1171
HphI	GGTGA	2 cut(s)	127, 1141
Hpy188I	TCNGA	4 cut(s)	247, 274, 664, 896
Hpy188III	TCNNGA	4 cut(s)	545, 715, 773, 1008
HpyAV	CCTTC	3 cut(s)	518, 968, 1241
HpyCH4III	ACNGT	3 cut(s)	375, 471, 676
HpyCH4IV	ACGT	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	8 cut(s)	52, 154, 205, 214, 703, 821, 848, 1052
HpyF3I	CTNAG	2 cut(s)	273, 864
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	6 cut(s)	45, 395, 613, 835, 1097, 1143
HspAI	GCGC	3 cut(s)	493, 706, 951
Ksp22I	TGATCA	2 cut(s)	151, 910
Kzo9I	GATC	4 cut(s)	151, 384, 541, 910
LmnI	GCTCC	4 cut(s)	94, 713, 805, 1043
Lsp1109I	GCAGC	6 cut(s)	42, 319, 775, 826, 836, 1110
LweI	GCATC	8 cut(s)	66, 204, 241, 817, 826, 838, 1042, 1135
MaeI	CTAG	3 cut(s)	567, 656, 843
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	2 cut(s)	115, 991
MalI	GATC	4 cut(s)	153, 386, 543, 912
MboI	GATC	4 cut(s)	151, 384, 541, 910
MboII	GAAGA	9 cut(s)	172, 296, 304, 617, 625, 653, 742, 767, 1146
MhlI	GDGCHC	2 cut(s)	125, 1118
MlyI	GAGTC	2 cut(s)	896, 974
MseI	TTAA	1 cut(s)	344
MslI	CAYNNNNRTG	1 cut(s)	40
MspA1I	CMGCKG	2 cut(s)	157, 827
MspI	CCGG	2 cut(s)	113, 1171
MspR9I	CCNGG	4 cut(s)	406, 1025, 1161, 1179
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	4 cut(s)	406, 1025, 1161, 1179
MvnI	CGCG	1 cut(s)	953
MwoI	GCNNNNNNNGC	8 cut(s)	52, 154, 205, 214, 703, 821, 848, 1052
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	4 cut(s)	151, 384, 541, 910
NlaIII	CATG	6 cut(s)	45, 395, 613, 835, 1097, 1143
NlaIV	GGNNCC	3 cut(s)	30, 99, 1117
NmuCI	GTSAC	2 cut(s)	115, 991
PasI	CCCWGGG	1 cut(s)	405
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	4, 659, 1004
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	9 cut(s)	57, 60, 81, 334, 424, 790, 826, 841, 1100
PleI	GAGTC	2 cut(s)	896, 974
PpsI	GAGTC	2 cut(s)	896, 974
Psp6I	CCWGG	4 cut(s)	404, 1023, 1159, 1177
PspGI	CCWGG	4 cut(s)	404, 1023, 1159, 1177
PspN4I	GGNNCC	3 cut(s)	30, 99, 1117
PspPI	GGNCC	2 cut(s)	307, 1221
PstI	CTGCAG	3 cut(s)	793, 991, 1210
PvuII	CAGCTG	2 cut(s)	157, 827
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
RseI	CAYNNNNRTG	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	344
SatI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
Sau3AI	GATC	4 cut(s)	151, 384, 541, 910
Sau96I	GGNCC	2 cut(s)	307, 1221
SchI	GAGTC	2 cut(s)	896, 974
ScrFI	CCNGG	4 cut(s)	406, 1025, 1161, 1179
SduI	GDGCHC	2 cut(s)	125, 1118
SfaNI	GCATC	8 cut(s)	66, 204, 241, 817, 826, 838, 1042, 1135
SfcI	CTRYAG	3 cut(s)	789, 987, 1206
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	209, 668
SmoI	CTYRAG	2 cut(s)	209, 668
SsiI	CCGC	5 cut(s)	59, 80, 138, 422, 500
SspMI	CTAG	3 cut(s)	567, 656, 843
StyD4I	CCNGG	4 cut(s)	404, 1023, 1159, 1177
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	3 cut(s)	375, 471, 676
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	2 cut(s)	49, 544
TauI	GCSGC	3 cut(s)	61, 82, 425
TfiI	GAWTC	3 cut(s)	4, 659, 1004
Tru1I	TTAA	1 cut(s)	344
Tru9I	TTAA	1 cut(s)	344
TscAI	CASTG	3 cut(s)	330, 925, 1190
TseFI	GTSAC	2 cut(s)	115, 991
TseI	GCWGC	6 cut(s)	55, 332, 788, 824, 839, 1098
Tsp45I	GTSAC	2 cut(s)	115, 991
TspDTI	ATGAA	8 cut(s)	17, 242, 408, 549, 570, 626, 743, 987
TspRI	CASTG	3 cut(s)	330, 925, 1190
Van91I	CCANNNNNTGG	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	1124
XapI	RAATTY	5 cut(s)	163, 767, 889, 1063, 1076
XcmI	CCANNNNNNNNNTGG	2 cut(s)	91, 598
XspI	CTAG	3 cut(s)	567, 656, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.