RchiOBHm_Chr1g0358181

Programmed cell death protein 7

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0004138
Physical Location & Seq
Reverse (-)
50236218 .. 50241107
4890 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ58336

Sequence Viewer

Length: 1254 bp
ATGAATCCAAATCCGTACCAACCTATGGCACCTCCACCTCCATGGCCTCGAATGCTGCCGCCTAACCCTCCAATGATGCCGCCCAACGCTCCTATGGTGCCCCCCAACCCTCCGGTAACGAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATGAAAGATAGTAAGGGGTCTGATGATGATGATGCTTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAGATAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCTTTAATGGCGAAACTACGAGTTGAGCTTGAACCGTTTAGAGCGATCACGCATGAAATGTGTCCCTGGGAGGAAAAGTCTGCGGCTGTAAGGTTATCCAATAAGATATGCAAGTCCAAGAGGAATAAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCTGAGCTTGAGACAGTATTGATTGTTGAGAAACTGCAAGAGCTGCGCTCCATCAGGATTGAGAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAAGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACAACCGAGAATTTCAGACCTGACTCCATTGATCAAAATAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCCCGACAATTCCAAGCACTAGTGAAGGCGACTTTACTGCAGTCACTAAAAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTATAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTACTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCGGATACCGGGACACTGGGTTCAACCTCCACCTCCTGCAGATGATATCTGGGCCTCCTACCTTCTGCAACCTAAATGA

Protein Analysis

417

Amino Acids

47.56

Weight (kDa)

6.41

Isoelectric Point (pI)

54.27

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PDCD7 PF16021 133 - 413 5.7e-17 Programmed cell death protein 7
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 3 cut(s) 28, 97, 1121
AccB7I CCANNNNNTGG 1 cut(s) 25
AciI CCGC 6 cut(s) 59, 80, 138, 270, 428, 506
AcsI RAATTY 5 cut(s) 163, 773, 895, 1069, 1082
AcuI CTGAAG 1 cut(s) 179
AfaI GTAC 2 cut(s) 17, 789
AfiI CCNNNNNNNGG 4 cut(s) 25, 763, 1132, 1183
AgsI TTSAA 4 cut(s) 289, 377, 782, 1199
AhlI ACTAGT 1 cut(s) 974
AjnI CCWGG 2 cut(s) 410, 1165
AjuI GAANNNNNNNTTGG 2 cut(s) 290, 322
AloI GAACNNNNNNTCC 4 cut(s) 1008, 1040, 1179, 1211
Alw21I GWGCWC 1 cut(s) 125
Alw26I GTCTC 3 cut(s) 128, 652, 671
AoxI GGCC 5 cut(s) 44, 312, 745, 955, 1227
ApeKI GCWGC 7 cut(s) 55, 338, 709, 794, 830, 845, 1104
ApoI RAATTY 5 cut(s) 163, 773, 895, 1069, 1082
AspLEI GCGC 2 cut(s) 501, 714
AspS9I GGNCC 3 cut(s) 313, 956, 1227
AsuC2I CCSGG 1 cut(s) 1185
AsuHPI GGTGA 1 cut(s) 1147
BaeGI GKGCMC 2 cut(s) 102, 1124
BanI GGYRCC 3 cut(s) 28, 97, 1121
BbsI GAAGAC 1 cut(s) 618
Bbv12I GWGCWC 1 cut(s) 125
BbvI GCAGC 7 cut(s) 42, 325, 696, 781, 832, 842, 1116
BccI CCATC 2 cut(s) 601, 725
BcgI CGANNNNNNTGC 2 cut(s) 974, 1008
BciT130I CCWGG 2 cut(s) 412, 1167
BciVI GTATCC 1 cut(s) 1173
BclI TGATCA 2 cut(s) 151, 916
BcnI CCSGG 1 cut(s) 1185
BcoDI GTCTC 3 cut(s) 128, 652, 671
BcuI ACTAGT 1 cut(s) 974
BfaI CTAG 4 cut(s) 573, 662, 849, 975
BfmI CTRYAG 4 cut(s) 795, 993, 1028, 1212
BfuI GTATCC 1 cut(s) 1173
BlpI GCTNAGC 1 cut(s) 870
Bme1390I CCNGG 3 cut(s) 412, 1167, 1185
BmgT120I GGNCC 3 cut(s) 313, 956, 1227
BmiI GGNNCC 3 cut(s) 30, 99, 1123
BmrFI CCNGG 3 cut(s) 412, 1167, 1185
BmrI ACTGGG 1 cut(s) 1201
BmsI GCATC 8 cut(s) 66, 204, 247, 823, 832, 844, 1048, 1141
BmuI ACTGGG 1 cut(s) 1201
BpiI GAAGAC 1 cut(s) 618
BplI GAGNNNNNCTC 2 cut(s) 698, 730
Bpu1102I GCTNAGC 1 cut(s) 870
BpuEI CTTGAG 2 cut(s) 230, 695
BpuMI CCSGG 1 cut(s) 1185
BsaI GGTCTC 1 cut(s) 128
BsaJI CCNNGG 3 cut(s) 41, 410, 411
BsaWI WCCGGW 1 cut(s) 112
BsaXI ACNNNNNCTCC 2 cut(s) 407, 437
Bsc4I CCNNNNNNNGG 4 cut(s) 25, 763, 1132, 1183
Bse1I ACTGG 1 cut(s) 1196
Bse3DI GCAATG 3 cut(s) 201, 501, 858
BseBI CCWGG 2 cut(s) 412, 1167
BseDI CCNNGG 3 cut(s) 41, 410, 411
BseGI GGATG 4 cut(s) 772, 847, 859, 1156
BseLI CCNNNNNNNGG 4 cut(s) 25, 763, 1132, 1183
BseMI GCAATG 3 cut(s) 201, 501, 858
BseMII CTCAG 3 cut(s) 270, 660, 861
BseNI ACTGG 1 cut(s) 1196
BseRI GAGGAG 1 cut(s) 818
BseSI GKGCMC 2 cut(s) 102, 1124
BseXI GCAGC 7 cut(s) 42, 325, 696, 781, 832, 842, 1116
BshFI GGCC 5 cut(s) 46, 314, 747, 957, 1229
BshNI GGYRCC 3 cut(s) 28, 97, 1121
BsiHKAI GWGCWC 1 cut(s) 125
BsiSI CCGG 3 cut(s) 113, 1177, 1184
BslFI GGGAC 2 cut(s) 393, 1200
BslI CCNNNNNNNGG 4 cut(s) 25, 763, 1132, 1183
BsmAI GTCTC 3 cut(s) 128, 652, 671
BsmFI GGGAC 2 cut(s) 393, 1200
BsmI GAATGC 1 cut(s) 57
BsnI GGCC 5 cut(s) 46, 314, 747, 957, 1229
Bso31I GGTCTC 1 cut(s) 128
Bsp1286I GDGCHC 3 cut(s) 102, 125, 1124
Bsp143I GATC 4 cut(s) 151, 390, 547, 916
Bsp1720I GCTNAGC 1 cut(s) 870
Bsp19I CCATGG 1 cut(s) 41
BspACI CCGC 6 cut(s) 59, 80, 138, 270, 428, 506
BspANI GGCC 5 cut(s) 46, 314, 747, 957, 1229
BspCNI CTCAG 3 cut(s) 271, 661, 862
BspLI GGNNCC 3 cut(s) 30, 99, 1123
BspMAI CTGCAG 3 cut(s) 799, 997, 1216
BspQI GCTCTTC 1 cut(s) 804
BspT107I GGYRCC 3 cut(s) 28, 97, 1121
BspTNI GGTCTC 1 cut(s) 128
BsrDI GCAATG 3 cut(s) 201, 501, 858
BsrI ACTGG 1 cut(s) 1196
BssECI CCNNGG 3 cut(s) 41, 410, 411
BssMI GATC 4 cut(s) 151, 390, 547, 916
BssT1I CCWWGG 1 cut(s) 41
Bst2UI CCWGG 2 cut(s) 412, 1167
Bst4CI ACNGT 3 cut(s) 381, 477, 682
Bst6I CTCTTC 3 cut(s) 642, 756, 804
BstAPI GCANNNNNTGC 1 cut(s) 709
BstC8I GCNNGC 1 cut(s) 631
BstDEI CTNAG 3 cut(s) 279, 669, 870
BstDSI CCRYGG 1 cut(s) 41
BstENI CCTNNNNNAGG 1 cut(s) 1130
BstF5I GGATG 4 cut(s) 772, 847, 859, 1156
BstHHI GCGC 2 cut(s) 501, 714
BstKTI GATC 4 cut(s) 154, 393, 550, 919
BstMAI GTCTC 3 cut(s) 128, 652, 671
BstMBI GATC 4 cut(s) 151, 390, 547, 916
BstMWI GCNNNNNNNGC 8 cut(s) 52, 154, 205, 214, 709, 827, 854, 1058
BstNI CCWGG 2 cut(s) 412, 1167
BstSCI CCNGG 3 cut(s) 410, 1165, 1183
BstSFI CTRYAG 4 cut(s) 795, 993, 1028, 1212
BstSLI GKGCMC 2 cut(s) 102, 1124
BstV1I GCAGC 7 cut(s) 42, 325, 696, 781, 832, 842, 1116
BstV2I GAAGAC 1 cut(s) 618
BstXI CCANNNNNNTGG 1 cut(s) 42
BsuI GTATCC 1 cut(s) 1173
BsuRI GGCC 5 cut(s) 46, 314, 747, 957, 1229
BtgI CCRYGG 1 cut(s) 41
BtsCI GGATG 4 cut(s) 772, 847, 859, 1156
BtsIMutI CAGTG 2 cut(s) 336, 1189
Cac8I GCNNGC 1 cut(s) 631
CfoI GCGC 2 cut(s) 501, 714
Cfr13I GGNCC 3 cut(s) 313, 956, 1227
Csp6I GTAC 2 cut(s) 16, 788
CviAII CATG 6 cut(s) 42, 398, 616, 838, 1100, 1146
CviQI GTAC 2 cut(s) 16, 788
DdeI CTNAG 3 cut(s) 279, 669, 870
DpnI GATC 4 cut(s) 153, 392, 549, 918
DpnII GATC 4 cut(s) 151, 390, 547, 916
Eam1104I CTCTTC 3 cut(s) 642, 756, 804
EarI CTCTTC 3 cut(s) 642, 756, 804
Eco130I CCWWGG 1 cut(s) 41
Eco31I GGTCTC 1 cut(s) 128
Eco32I GATATC 1 cut(s) 1222
Eco57I CTGAAG 1 cut(s) 179
EcoNI CCTNNNNNAGG 1 cut(s) 1130
EcoRII CCWGG 2 cut(s) 410, 1165
EcoRV GATATC 1 cut(s) 1222
EcoT14I CCWWGG 1 cut(s) 41
ErhI CCWWGG 1 cut(s) 41
FaeI CATG 6 cut(s) 45, 401, 619, 841, 1103, 1149
FaqI GGGAC 2 cut(s) 393, 1200
FatI CATG 6 cut(s) 41, 397, 615, 837, 1099, 1145
FauI CCCGC 1 cut(s) 263
FbaI TGATCA 2 cut(s) 151, 916
FokI GGATG 4 cut(s) 779, 854, 866, 1163
FspBI CTAG 4 cut(s) 573, 662, 849, 975
GlaI GCGC 2 cut(s) 500, 713
HaeIII GGCC 5 cut(s) 46, 314, 747, 957, 1229
HapII CCGG 3 cut(s) 113, 1177, 1184
HhaI GCGC 2 cut(s) 501, 714
Hin1II CATG 6 cut(s) 45, 401, 619, 841, 1103, 1149
Hin6I GCGC 2 cut(s) 499, 712
HinP1I GCGC 2 cut(s) 499, 712
HinfI GANTC 4 cut(s) 4, 665, 908, 1010
HpaII CCGG 3 cut(s) 113, 1177, 1184
HphI GGTGA 1 cut(s) 1147
Hpy188I TCNGA 4 cut(s) 247, 280, 670, 902
Hpy188III TCNNGA 4 cut(s) 551, 721, 779, 1014
HpyAV CCTTC 3 cut(s) 524, 974, 1247
HpyCH4III ACNGT 3 cut(s) 381, 477, 682
HpyCH4IV ACGT 1 cut(s) 526
HpyF10VI GCNNNNNNNGC 8 cut(s) 52, 154, 205, 214, 709, 827, 854, 1058
HpyF3I CTNAG 3 cut(s) 279, 669, 870
HpySE526I ACGT 1 cut(s) 526
Hsp92II CATG 6 cut(s) 45, 401, 619, 841, 1103, 1149
HspAI GCGC 2 cut(s) 499, 712
Ksp22I TGATCA 2 cut(s) 151, 916
Kzo9I GATC 4 cut(s) 151, 390, 547, 916
LguI GCTCTTC 1 cut(s) 804
LmnI GCTCC 3 cut(s) 94, 719, 1049
Lsp1109I GCAGC 7 cut(s) 42, 325, 696, 781, 832, 842, 1116
LweI GCATC 8 cut(s) 66, 204, 247, 823, 832, 844, 1048, 1141
MaeI CTAG 4 cut(s) 573, 662, 849, 975
MaeII ACGT 1 cut(s) 526
MaeIII GTNAC 2 cut(s) 115, 997
MalI GATC 4 cut(s) 153, 392, 549, 918
MboI GATC 4 cut(s) 151, 390, 547, 916
MboII GAAGA 9 cut(s) 172, 310, 623, 631, 659, 748, 773, 821, 1152
MhlI GDGCHC 3 cut(s) 102, 125, 1124
MluCI AATT 8 cut(s) 163, 579, 624, 773, 895, 963, 1069, 1082
MlyI GAGTC 1 cut(s) 902
MseI TTAA 2 cut(s) 350, 636
MslI CAYNNNNRTG 1 cut(s) 40
MspA1I CMGCKG 3 cut(s) 157, 270, 833
MspI CCGG 3 cut(s) 113, 1177, 1184
MspR9I CCNGG 3 cut(s) 412, 1167, 1185
Mva1269I GAATGC 1 cut(s) 57
MvaI CCWGG 2 cut(s) 412, 1167
MwoI GCNNNNNNNGC 8 cut(s) 52, 154, 205, 214, 709, 827, 854, 1058
NciI CCSGG 1 cut(s) 1185
NcoI CCATGG 1 cut(s) 41
NdeII GATC 4 cut(s) 151, 390, 547, 916
NlaIII CATG 6 cut(s) 45, 401, 619, 841, 1103, 1149
NlaIV GGNNCC 3 cut(s) 30, 99, 1123
NmuCI GTSAC 1 cut(s) 997
PasI CCCWGGG 1 cut(s) 411
PciSI GCTCTTC 1 cut(s) 804
PctI GAATGC 1 cut(s) 57
PfeI GAWTC 3 cut(s) 4, 665, 1010
PflMI CCANNNNNTGG 1 cut(s) 25
PleI GAGTC 1 cut(s) 902
PpsI GAGTC 1 cut(s) 902
Psp6I CCWGG 2 cut(s) 410, 1165
PspGI CCWGG 2 cut(s) 410, 1165
PspN4I GGNNCC 3 cut(s) 30, 99, 1123
PspPI GGNCC 3 cut(s) 313, 956, 1227
PstI CTGCAG 3 cut(s) 799, 997, 1216
PvuII CAGCTG 2 cut(s) 157, 833
RsaI GTAC 2 cut(s) 17, 789
RsaNI GTAC 2 cut(s) 16, 788
RseI CAYNNNNRTG 1 cut(s) 40
SapI GCTCTTC 1 cut(s) 804
SaqAI TTAA 2 cut(s) 350, 636
Sau3AI GATC 4 cut(s) 151, 390, 547, 916
Sau96I GGNCC 3 cut(s) 313, 956, 1227
SchI GAGTC 1 cut(s) 902
ScrFI CCNGG 3 cut(s) 412, 1167, 1185
SduI GDGCHC 3 cut(s) 102, 125, 1124
SfaNI GCATC 8 cut(s) 66, 204, 247, 823, 832, 844, 1048, 1141
SfcI CTRYAG 4 cut(s) 795, 993, 1028, 1212
SmiMI CAYNNNNRTG 1 cut(s) 40
SmlI CTYRAG 2 cut(s) 209, 674
SmoI CTYRAG 2 cut(s) 209, 674
SpeI ACTAGT 1 cut(s) 974
Sse9I AATT 8 cut(s) 163, 579, 624, 773, 895, 963, 1069, 1082
SsiI CCGC 6 cut(s) 59, 80, 138, 270, 428, 506
SspMI CTAG 4 cut(s) 573, 662, 849, 975
StyD4I CCNGG 3 cut(s) 410, 1165, 1183
StyI CCWWGG 1 cut(s) 41
TaaI ACNGT 3 cut(s) 381, 477, 682
TaiI ACGT 1 cut(s) 529
TaqI TCGA 3 cut(s) 49, 550, 878
TasI AATT 8 cut(s) 163, 579, 624, 773, 895, 963, 1069, 1082
TauI GCSGC 3 cut(s) 61, 82, 431
TfiI GAWTC 3 cut(s) 4, 665, 1010
Tru1I TTAA 2 cut(s) 350, 636
Tru9I TTAA 2 cut(s) 350, 636
TscAI CASTG 2 cut(s) 336, 1196
TseFI GTSAC 1 cut(s) 997
TseI GCWGC 7 cut(s) 55, 338, 709, 794, 830, 845, 1104
Tsp45I GTSAC 1 cut(s) 997
TspDTI ATGAA 7 cut(s) 17, 242, 414, 555, 576, 632, 749
TspRI CASTG 2 cut(s) 336, 1196
Van91I CCANNNNNTGG 1 cut(s) 25
XagI CCTNNNNNAGG 1 cut(s) 1130
XapI RAATTY 5 cut(s) 163, 773, 895, 1069, 1082
XcmI CCANNNNNNNNNTGG 2 cut(s) 91, 604
XspI CTAG 4 cut(s) 573, 662, 849, 975
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.