Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

50191081 .. 50193451

Gene Structure 2371 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58324

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1044 bp

ATGCTGATGTTGATCAGAGATGGTAAGGGGTCTGATGATGCTTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAGATAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCTTTAATGGCTAAACTACGAGTTGAGCATGAACCGTTTAGAGTGATCACGCACAAAATGTGTCCCTGGGAGGAAAAATCTGCGGCTGTCCAATTATCCAATAAGATATGCAAGTCCAAGAGGAAAAACAATGGAGGAAAAGAAAGAGGAAGAGCATTGCGGAGATGTTTGCAAAGGTGGGAACATGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATAGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACAGTATTGATTGTTGAGAAATTGCAAGAGTTGCGCTCCATCAGGATTGAAAAAATGAAGAAACAAGGTTTTGATATGGACATTTTCTCCCAGAAGAGGATGATAAATTTCTTAAAAGAGTACGAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACAACCGAGAATTTCAGACCTGACTCTATTAATCAAAGCAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCCCGACAATTCCAAGCACTAATGAAGGCAACTCTACTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTACAGTGGAGCTTATGATGCTGTGGCAAACTATGGAATTTTATCACTATTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCGGATACCAGGACACTGGGTGCAACCTCCACCTCCTGCAGATGATATCTGGGCCTCCTACCTTCTGCAACCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

347

Amino Acids

40.92

Weight (kDa)

9.86

Isoelectric Point (pI)

57.16

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	272 - 343	2.3e-11	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	911
AciI	CCGC	3 cut(s)	51, 209, 286
AcsI	RAATTY	3 cut(s)	568, 690, 872
AdeI	CACNNNGTG	1 cut(s)	985
AfaI	GTAC	1 cut(s)	584
AfiI	CCNNNNNNNGG	2 cut(s)	558, 922
AgsI	TTSAA	2 cut(s)	70, 512
AjnI	CCWGG	3 cut(s)	191, 955, 973
AjuI	GAANNNNNNNTTGG	2 cut(s)	71, 103
AloI	GAACNNNNNNTCC	2 cut(s)	803, 835
AluBI	AGCT	8 cut(s)	119, 329, 341, 356, 457, 589, 628, 847
AluI	AGCT	8 cut(s)	119, 329, 341, 356, 457, 589, 628, 847
Alw26I	GTCTC	2 cut(s)	436, 455
AoxI	GGCC	3 cut(s)	93, 750, 1017
ApeKI	GCWGC	5 cut(s)	119, 589, 625, 640, 894
ApoI	RAATTY	3 cut(s)	568, 690, 872
AseI	ATTAAT	1 cut(s)	710
AspLEI	GCGC	1 cut(s)	498
AspS9I	GGNCC	3 cut(s)	94, 751, 1017
AsuHPI	GGTGA	1 cut(s)	937
BaeGI	GKGCMC	1 cut(s)	914
BanI	GGYRCC	1 cut(s)	911
BbsI	GAAGAC	1 cut(s)	402
BbvI	GCAGC	5 cut(s)	106, 576, 627, 637, 906
BccI	CCATC	3 cut(s)	14, 385, 509
BciT130I	CCWGG	3 cut(s)	193, 957, 975
BciVI	GTATCC	1 cut(s)	963
BclI	TGATCA	2 cut(s)	12, 171
BcoDI	GTCTC	2 cut(s)	436, 455
BfaI	CTAG	3 cut(s)	357, 446, 644
BfmI	CTRYAG	4 cut(s)	590, 788, 823, 1002
BfuI	GTATCC	1 cut(s)	963
BisI	GCNGC	6 cut(s)	120, 210, 590, 626, 641, 895
BlpI	GCTNAGC	1 cut(s)	665
BlsI	GCNGC	6 cut(s)	121, 211, 591, 627, 642, 896
Bme1390I	CCNGG	3 cut(s)	193, 957, 975
BmgT120I	GGNCC	3 cut(s)	94, 751, 1017
BmiI	GGNNCC	1 cut(s)	913
BmrFI	CCNGG	3 cut(s)	193, 957, 975
BmrI	ACTGGG	1 cut(s)	991
BmsI	GCATC	6 cut(s)	28, 618, 627, 639, 843, 931
BmuI	ACTGGG	1 cut(s)	991
BpiI	GAAGAC	1 cut(s)	402
BplI	GAGNNNNNCTC	2 cut(s)	482, 514
Bpu1102I	GCTNAGC	1 cut(s)	665
BpuEI	CTTGAG	1 cut(s)	479
BsaBI	GATNNNNATC	1 cut(s)	11
BsaJI	CCNNGG	2 cut(s)	191, 192
BsaXI	ACNNNNNCTCC	2 cut(s)	533, 563
Bsc4I	CCNNNNNNNGG	2 cut(s)	558, 922
Bse1I	ACTGG	1 cut(s)	986
Bse3DI	GCAATG	2 cut(s)	281, 653
Bse8I	GATNNNNATC	1 cut(s)	11
BseBI	CCWGG	3 cut(s)	193, 957, 975
BseDI	CCNNGG	2 cut(s)	191, 192
BseGI	GGATG	4 cut(s)	567, 642, 654, 946
BseJI	GATNNNNATC	1 cut(s)	11
BseLI	CCNNNNNNNGG	2 cut(s)	558, 922
BseMI	GCAATG	2 cut(s)	281, 653
BseMII	CTCAG	2 cut(s)	51, 656
BseNI	ACTGG	1 cut(s)	986
BseRI	GAGGAG	3 cut(s)	613, 616, 619
BseSI	GKGCMC	1 cut(s)	914
BseXI	GCAGC	5 cut(s)	106, 576, 627, 637, 906
BshFI	GGCC	3 cut(s)	95, 752, 1019
BshNI	GGYRCC	1 cut(s)	911
BsiSI	CCGG	1 cut(s)	967
BslFI	GGGAC	1 cut(s)	174
BslI	CCNNNNNNNGG	2 cut(s)	558, 922
BsmAI	GTCTC	2 cut(s)	436, 455
BsmFI	GGGAC	1 cut(s)	174
BsnI	GGCC	3 cut(s)	95, 752, 1019
Bsp1286I	GDGCHC	1 cut(s)	914
Bsp143I	GATC	3 cut(s)	12, 171, 331
Bsp1720I	GCTNAGC	1 cut(s)	665
BspACI	CCGC	3 cut(s)	51, 209, 286
BspANI	GGCC	3 cut(s)	95, 752, 1019
BspCNI	CTCAG	2 cut(s)	52, 657
BspLI	GGNNCC	1 cut(s)	913
BspMAI	CTGCAG	3 cut(s)	594, 792, 1006
BspQI	GCTCTTC	1 cut(s)	271
BspT107I	GGYRCC	1 cut(s)	911
BsrDI	GCAATG	2 cut(s)	281, 653
BsrI	ACTGG	1 cut(s)	986
BssECI	CCNNGG	2 cut(s)	191, 192
BssMI	GATC	3 cut(s)	12, 171, 331
Bst2UI	CCWGG	3 cut(s)	193, 957, 975
Bst4CI	ACNGT	3 cut(s)	162, 466, 841
Bst6I	CTCTTC	3 cut(s)	271, 426, 551
BstAPI	GCANNNNNTGC	1 cut(s)	493
BstC8I	GCNNGC	1 cut(s)	415
BstDEI	CTNAG	2 cut(s)	60, 665
BstENI	CCTNNNNNAGG	1 cut(s)	920
BstF5I	GGATG	4 cut(s)	567, 642, 654, 946
BstHHI	GCGC	1 cut(s)	498
BstKTI	GATC	3 cut(s)	15, 174, 334
BstMAI	GTCTC	2 cut(s)	436, 455
BstMBI	GATC	3 cut(s)	12, 171, 331
BstMWI	GCNNNNNNNGC	4 cut(s)	493, 622, 649, 853
BstNI	CCWGG	3 cut(s)	193, 957, 975
BstSCI	CCNGG	3 cut(s)	191, 955, 973
BstSFI	CTRYAG	4 cut(s)	590, 788, 823, 1002
BstSLI	GKGCMC	1 cut(s)	914
BstV1I	GCAGC	5 cut(s)	106, 576, 627, 637, 906
BstV2I	GAAGAC	1 cut(s)	402
BstXI	CCANNNNNNTGG	1 cut(s)	981
BsuI	GTATCC	1 cut(s)	963
BsuRI	GGCC	3 cut(s)	95, 752, 1019
BtsCI	GGATG	4 cut(s)	567, 642, 654, 946
BtsI	GCAGTG	1 cut(s)	726
BtsIMutI	CAGTG	4 cut(s)	117, 726, 846, 979
Cac8I	GCNNGC	1 cut(s)	415
CfoI	GCGC	1 cut(s)	498
Cfr13I	GGNCC	3 cut(s)	94, 751, 1017
Csp6I	GTAC	1 cut(s)	583
CviAII	CATG	6 cut(s)	155, 311, 400, 633, 890, 936
CviQI	GTAC	1 cut(s)	583
DdeI	CTNAG	2 cut(s)	60, 665
DpnI	GATC	3 cut(s)	14, 173, 333
DpnII	GATC	3 cut(s)	12, 171, 331
DraIII	CACNNNGTG	1 cut(s)	985
Eam1104I	CTCTTC	3 cut(s)	271, 426, 551
EarI	CTCTTC	3 cut(s)	271, 426, 551
Eco32I	GATATC	1 cut(s)	1012
EcoNI	CCTNNNNNAGG	1 cut(s)	920
EcoRII	CCWGG	3 cut(s)	191, 955, 973
EcoRV	GATATC	1 cut(s)	1012
FaeI	CATG	6 cut(s)	158, 314, 403, 636, 893, 939
FaqI	GGGAC	1 cut(s)	174
FatI	CATG	6 cut(s)	154, 310, 399, 632, 889, 935
FauI	CCCGC	1 cut(s)	44
FbaI	TGATCA	2 cut(s)	12, 171
Fnu4HI	GCNGC	6 cut(s)	120, 210, 590, 626, 641, 895
FokI	GGATG	4 cut(s)	574, 649, 661, 953
Fsp4HI	GCNGC	6 cut(s)	120, 210, 590, 626, 641, 895
FspBI	CTAG	3 cut(s)	357, 446, 644
GlaI	GCGC	1 cut(s)	497
GluI	GCNGC	6 cut(s)	120, 210, 590, 626, 641, 895
HaeIII	GGCC	3 cut(s)	95, 752, 1019
HapII	CCGG	1 cut(s)	967
HhaI	GCGC	1 cut(s)	498
Hin1II	CATG	6 cut(s)	158, 314, 403, 636, 893, 939
Hin6I	GCGC	1 cut(s)	496
HinP1I	GCGC	1 cut(s)	496
HinfI	GANTC	3 cut(s)	449, 703, 805
HpaII	CCGG	1 cut(s)	967
HphI	GGTGA	1 cut(s)	937
Hpy188I	TCNGA	5 cut(s)	17, 34, 61, 454, 697
Hpy188III	TCNNGA	3 cut(s)	335, 505, 809
HpyAV	CCTTC	3 cut(s)	308, 769, 1037
HpyCH4III	ACNGT	3 cut(s)	162, 466, 841
HpyF10VI	GCNNNNNNNGC	4 cut(s)	493, 622, 649, 853
HpyF3I	CTNAG	2 cut(s)	60, 665
Hsp92II	CATG	6 cut(s)	158, 314, 403, 636, 893, 939
HspAI	GCGC	1 cut(s)	496
Ksp22I	TGATCA	2 cut(s)	12, 171
Kzo9I	GATC	3 cut(s)	12, 171, 331
LguI	GCTCTTC	1 cut(s)	271
LmnI	GCTCC	3 cut(s)	503, 606, 844
Lsp1109I	GCAGC	5 cut(s)	106, 576, 627, 637, 906
LweI	GCATC	6 cut(s)	28, 618, 627, 639, 843, 931
MaeI	CTAG	3 cut(s)	357, 446, 644
MaeIII	GTNAC	2 cut(s)	792, 835
MalI	GATC	3 cut(s)	14, 173, 333
MboI	GATC	3 cut(s)	12, 171, 331
MboII	GAAGA	8 cut(s)	91, 288, 407, 415, 443, 532, 568, 942
MhlI	GDGCHC	1 cut(s)	914
MluCI	AATT	7 cut(s)	218, 363, 482, 568, 690, 758, 872
MlyI	GAGTC	1 cut(s)	697
MseI	TTAA	4 cut(s)	131, 420, 575, 710
MspA1I	CMGCKG	2 cut(s)	51, 628
MspI	CCGG	1 cut(s)	967
MspR9I	CCNGG	3 cut(s)	193, 957, 975
MvaI	CCWGG	3 cut(s)	193, 957, 975
MwoI	GCNNNNNNNGC	4 cut(s)	493, 622, 649, 853
NdeII	GATC	3 cut(s)	12, 171, 331
NlaIII	CATG	6 cut(s)	158, 314, 403, 636, 893, 939
NlaIV	GGNNCC	1 cut(s)	913
NmuCI	GTSAC	1 cut(s)	792
PasI	CCCWGGG	1 cut(s)	192
PciSI	GCTCTTC	1 cut(s)	271
PfeI	GAWTC	2 cut(s)	449, 805
PkrI	GCNGC	6 cut(s)	121, 211, 591, 627, 642, 896
PleI	GAGTC	1 cut(s)	697
PpsI	GAGTC	1 cut(s)	697
PshBI	ATTAAT	1 cut(s)	710
Psp6I	CCWGG	3 cut(s)	191, 955, 973
PspGI	CCWGG	3 cut(s)	191, 955, 973
PspN4I	GGNNCC	1 cut(s)	913
PspPI	GGNCC	3 cut(s)	94, 751, 1017
PstI	CTGCAG	3 cut(s)	594, 792, 1006
PvuII	CAGCTG	1 cut(s)	628
RsaI	GTAC	1 cut(s)	584
RsaNI	GTAC	1 cut(s)	583
SapI	GCTCTTC	1 cut(s)	271
SaqAI	TTAA	4 cut(s)	131, 420, 575, 710
SatI	GCNGC	6 cut(s)	120, 210, 590, 626, 641, 895
Sau3AI	GATC	3 cut(s)	12, 171, 331
Sau96I	GGNCC	3 cut(s)	94, 751, 1017
SchI	GAGTC	1 cut(s)	697
ScrFI	CCNGG	3 cut(s)	193, 957, 975
SduI	GDGCHC	1 cut(s)	914
SfaNI	GCATC	6 cut(s)	28, 618, 627, 639, 843, 931
SfcI	CTRYAG	4 cut(s)	590, 788, 823, 1002
SmlI	CTYRAG	1 cut(s)	458
SmoI	CTYRAG	1 cut(s)	458
Sse9I	AATT	7 cut(s)	218, 363, 482, 568, 690, 758, 872
SsiI	CCGC	3 cut(s)	51, 209, 286
SspMI	CTAG	3 cut(s)	357, 446, 644
StyD4I	CCNGG	3 cut(s)	191, 955, 973
TaaI	ACNGT	3 cut(s)	162, 466, 841
TaqI	TCGA	2 cut(s)	334, 673
TasI	AATT	7 cut(s)	218, 363, 482, 568, 690, 758, 872
TauI	GCSGC	1 cut(s)	212
TfiI	GAWTC	2 cut(s)	449, 805
Tru1I	TTAA	4 cut(s)	131, 420, 575, 710
Tru9I	TTAA	4 cut(s)	131, 420, 575, 710
TscAI	CASTG	4 cut(s)	117, 726, 846, 986
TseFI	GTSAC	1 cut(s)	792
TseI	GCWGC	5 cut(s)	119, 589, 625, 640, 894
Tsp45I	GTSAC	1 cut(s)	792
TspDTI	ATGAA	7 cut(s)	171, 327, 339, 360, 416, 533, 788
TspRI	CASTG	4 cut(s)	117, 726, 846, 986
VspI	ATTAAT	1 cut(s)	710
XagI	CCTNNNNNAGG	1 cut(s)	920
XapI	RAATTY	3 cut(s)	568, 690, 872
XcmI	CCANNNNNNNNNTGG	1 cut(s)	388
XspI	CTAG	3 cut(s)	357, 446, 644

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.