Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002071.1

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

45558 .. 49689

Gene Structure 4132 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0002071.1_g000008.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1407 bp

atgaatccaaatccgtaccaacctatggcacctccacctccatggcctcgaatgctgccgcctaaccctcctatggtgccccccaaccctccggtgacgagcactttctgggagaccgcaaatgtgcgtgatcagctgaagaatttgcaggacactcttggccttgcaaaagcaatgcagaaagagcttgagatgctgatgttgatgaaagatggtaaggggtctgatgatgatgcttctgtcagcgggttttctgagtttttgaaagacaggaagattgatttggaggaccaagtgttgcaatcagtggaagctgcaaattctttaatggcgaaactacgagttgagcttgaaccgtttagagcgatcacgcatgaaatgtgtccctgggaggaaaagtctgcggctgtaaggttatccaataagatatgcaagtccaagaggaataaacggtggaggaaaagcaagaggaagcgcattgcggagatgattgcaaaggaacgtgaagggtttgatgaagctgatcgagaagctgatgaatggagagctagggaaattgcaaaggatattgccaaacgcaagatggaagacatgaagaaaattgcaagccttaaagcaaaggaagagagaaagagactagaatccgagcttgagacagtattgattgttgagaaactgcaagagctgcgctccatcaggattgagaaaatgaagaaacaaggccattttctcccagaagaggatgataaatttcttgaaagagtacgagctgcagttgaggaggaagagcatcaagcaatcttggcagctgacatggatgctgctagggatgccattgcaactgctgagcaatcgaggaaaacaaccgagaatttcagacctgactccattgatcaaaatagtgctaaaggcgagagtaaggaaagtaaaggcccgacaattccaagcactagtgaaggcgactttactgcagtcactaacaaggaatctggaaaacaagttctacagggagagggttatagtggagcttatgatgctgtggcaaatttacctatggaattttatcactactatcatggcagcaatactgatatgggcacccttattgaggtgagaagaacatgggatgcctatataagaccaggaggaaggccactgagagaagttcttgatagagtacgagccacaggtgaggaagagaagcaacaagcagtcgtggcaccttgggatgccaacatcgatgctgcttggtttgccatcacaactgctgatcaatcgagcaaagcaaagccgagaacttcaaacccgactctgttgatcaaagcagtgatagaggctagaataacgaaagtaaaggccacacaactccaagcacaaaatagtggcgcttatgatgctgtaacgtag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

468

Amino Acids

52.96

Weight (kDa)

6.36

Isoelectric Point (pI)

50.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	4 cut(s)	28, 76, 1097, 1219
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	5 cut(s)	59, 117, 246, 404, 482
AcsI	RAATTY	6 cut(s)	142, 319, 749, 871, 1045, 1058
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	3 cut(s)	17, 765, 1179
AfiI	CCNNNNNNNGG	4 cut(s)	25, 73, 739, 1108
AgsI	TTSAA	4 cut(s)	265, 353, 758, 1302
AhlI	ACTAGT	1 cut(s)	950
AjnI	CCWGG	2 cut(s)	386, 1141
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AloI	GAACNNNNNNTCC	2 cut(s)	984, 1016
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	3 cut(s)	107, 628, 647
AoxI	GGCC	6 cut(s)	44, 160, 721, 931, 1151, 1356
ApeKI	GCWGC	8 cut(s)	55, 314, 685, 770, 806, 821, 1080, 1244
ApoI	RAATTY	6 cut(s)	142, 319, 749, 871, 1045, 1058
AspLEI	GCGC	3 cut(s)	477, 690, 1388
AspS9I	GGNCC	2 cut(s)	289, 932
AsuHPI	GGTGA	3 cut(s)	106, 1123, 1202
AvaII	GGWCC	1 cut(s)	289
BaeGI	GKGCMC	2 cut(s)	81, 1100
BanI	GGYRCC	4 cut(s)	28, 76, 1097, 1219
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	8 cut(s)	42, 301, 672, 757, 808, 818, 1092, 1231
BccI	CCATC	4 cut(s)	206, 577, 701, 1265
BcgI	CGANNNNNNTGC	2 cut(s)	950, 984
BciT130I	CCWGG	2 cut(s)	388, 1143
BclI	TGATCA	4 cut(s)	130, 892, 1270, 1317
BcoDI	GTCTC	3 cut(s)	107, 628, 647
BcuI	ACTAGT	1 cut(s)	950
BfaI	CTAG	5 cut(s)	549, 638, 825, 951, 1338
BfmI	CTRYAG	3 cut(s)	771, 969, 1004
BfoI	RGCGCY	1 cut(s)	1389
BlpI	GCTNAGC	1 cut(s)	846
Bme1390I	CCNGG	2 cut(s)	388, 1143
Bme18I	GGWCC	1 cut(s)	289
BmgT120I	GGNCC	2 cut(s)	289, 932
BmiI	GGNNCC	4 cut(s)	30, 78, 1099, 1221
BmrFI	CCNGG	2 cut(s)	388, 1143
BpiI	GAAGAC	1 cut(s)	594
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	209, 671
Bsa29I	ATCGAT	1 cut(s)	1239
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	4 cut(s)	41, 386, 387, 1223
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 73, 739, 1108
Bse3DI	GCAATG	3 cut(s)	180, 477, 834
BseBI	CCWGG	2 cut(s)	388, 1143
BseCI	ATCGAT	1 cut(s)	1239
BseDI	CCNNGG	4 cut(s)	41, 386, 387, 1223
BseGI	GGATG	5 cut(s)	748, 823, 835, 1132, 1234
BseLI	CCNNNNNNNGG	4 cut(s)	25, 73, 739, 1108
BseMI	GCAATG	3 cut(s)	180, 477, 834
BseMII	CTCAG	3 cut(s)	246, 837, 1148
BseRI	GAGGAG	1 cut(s)	794
BseSI	GKGCMC	2 cut(s)	81, 1100
BseXI	GCAGC	8 cut(s)	42, 301, 672, 757, 808, 818, 1092, 1231
BshFI	GGCC	6 cut(s)	46, 162, 723, 933, 1153, 1358
BshNI	GGYRCC	4 cut(s)	28, 76, 1097, 1219
BshVI	ATCGAT	1 cut(s)	1239
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	1 cut(s)	92
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	4 cut(s)	25, 73, 739, 1108
BsmAI	GTCTC	3 cut(s)	107, 628, 647
BsmFI	GGGAC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	6 cut(s)	46, 162, 723, 933, 1153, 1358
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	3 cut(s)	81, 104, 1100
Bsp143I	GATC	6 cut(s)	130, 366, 523, 892, 1270, 1317
Bsp1720I	GCTNAGC	1 cut(s)	846
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	5 cut(s)	59, 117, 246, 404, 482
BspANI	GGCC	6 cut(s)	46, 162, 723, 933, 1153, 1358
BspCNI	CTCAG	3 cut(s)	247, 838, 1149
BspDI	ATCGAT	1 cut(s)	1239
BspLI	GGNNCC	4 cut(s)	30, 78, 1099, 1221
BspMAI	CTGCAG	2 cut(s)	775, 973
BspQI	GCTCTTC	1 cut(s)	780
BspT107I	GGYRCC	4 cut(s)	28, 76, 1097, 1219
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	3 cut(s)	180, 477, 834
BssECI	CCNNGG	4 cut(s)	41, 386, 387, 1223
BssMI	GATC	6 cut(s)	130, 366, 523, 892, 1270, 1317
BssT1I	CCWWGG	2 cut(s)	41, 1223
Bst2UI	CCWGG	2 cut(s)	388, 1143
Bst4CI	ACNGT	3 cut(s)	357, 453, 658
Bst6I	CTCTTC	4 cut(s)	618, 732, 780, 1191
BstAPI	GCANNNNNTGC	1 cut(s)	685
BstC8I	GCNNGC	1 cut(s)	607
BstDEI	CTNAG	3 cut(s)	255, 846, 1157
BstDSI	CCRYGG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	1106
BstF5I	GGATG	5 cut(s)	748, 823, 835, 1132, 1234
BstH2I	RGCGCY	1 cut(s)	1389
BstHHI	GCGC	3 cut(s)	477, 690, 1388
BstKTI	GATC	6 cut(s)	133, 369, 526, 895, 1273, 1320
BstMAI	GTCTC	3 cut(s)	107, 628, 647
BstMBI	GATC	6 cut(s)	130, 366, 523, 892, 1270, 1317
BstNI	CCWGG	2 cut(s)	388, 1143
BstSCI	CCNGG	2 cut(s)	386, 1141
BstSFI	CTRYAG	3 cut(s)	771, 969, 1004
BstSLI	GKGCMC	2 cut(s)	81, 1100
BstV1I	GCAGC	8 cut(s)	42, 301, 672, 757, 808, 818, 1092, 1231
BstV2I	GAAGAC	1 cut(s)	594
BstXI	CCANNNNNNTGG	1 cut(s)	42
Bsu15I	ATCGAT	1 cut(s)	1239
BsuRI	GGCC	6 cut(s)	46, 162, 723, 933, 1153, 1358
BsuTUI	ATCGAT	1 cut(s)	1239
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	5 cut(s)	748, 823, 835, 1132, 1234
BtsI	GCAGTG	1 cut(s)	1332
BtsIMutI	CAGTG	3 cut(s)	312, 1154, 1332
Cac8I	GCNNGC	1 cut(s)	607
CfoI	GCGC	3 cut(s)	477, 690, 1388
Cfr13I	GGNCC	2 cut(s)	289, 932
ClaI	ATCGAT	1 cut(s)	1239
Csp6I	GTAC	3 cut(s)	16, 764, 1178
CviAII	CATG	6 cut(s)	42, 374, 592, 814, 1076, 1122
CviQI	GTAC	3 cut(s)	16, 764, 1178
DdeI	CTNAG	3 cut(s)	255, 846, 1157
DpnI	GATC	6 cut(s)	132, 368, 525, 894, 1272, 1319
DpnII	GATC	6 cut(s)	130, 366, 523, 892, 1270, 1317
Eam1104I	CTCTTC	4 cut(s)	618, 732, 780, 1191
EarI	CTCTTC	4 cut(s)	618, 732, 780, 1191
Eco130I	CCWWGG	2 cut(s)	41, 1223
Eco31I	GGTCTC	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	1106
EcoRII	CCWGG	2 cut(s)	386, 1141
EcoT14I	CCWWGG	2 cut(s)	41, 1223
ErhI	CCWWGG	2 cut(s)	41, 1223
FaeI	CATG	6 cut(s)	45, 377, 595, 817, 1079, 1125
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	6 cut(s)	41, 373, 591, 813, 1075, 1121
FauI	CCCGC	1 cut(s)	239
FbaI	TGATCA	4 cut(s)	130, 892, 1270, 1317
FokI	GGATG	5 cut(s)	755, 830, 842, 1139, 1241
FspBI	CTAG	5 cut(s)	549, 638, 825, 951, 1338
GlaI	GCGC	3 cut(s)	476, 689, 1387
HaeII	RGCGCY	1 cut(s)	1389
HaeIII	GGCC	6 cut(s)	46, 162, 723, 933, 1153, 1358
HapII	CCGG	1 cut(s)	92
HhaI	GCGC	3 cut(s)	477, 690, 1388
Hin1II	CATG	6 cut(s)	45, 377, 595, 817, 1079, 1125
Hin6I	GCGC	3 cut(s)	475, 688, 1386
HinP1I	GCGC	3 cut(s)	475, 688, 1386
HinfI	GANTC	5 cut(s)	4, 641, 884, 986, 1309
HpaII	CCGG	1 cut(s)	92
HphI	GGTGA	3 cut(s)	106, 1123, 1202
Hpy188I	TCNGA	4 cut(s)	226, 256, 646, 878
Hpy188III	TCNNGA	5 cut(s)	527, 697, 755, 990, 1169
HpyAV	CCTTC	3 cut(s)	500, 950, 1143
HpyCH4III	ACNGT	3 cut(s)	357, 453, 658
HpyCH4IV	ACGT	2 cut(s)	502, 1403
HpyF3I	CTNAG	3 cut(s)	255, 846, 1157
HpySE526I	ACGT	2 cut(s)	502, 1403
Hsp92II	CATG	6 cut(s)	45, 377, 595, 817, 1079, 1125
HspAI	GCGC	3 cut(s)	475, 688, 1386
Ksp22I	TGATCA	4 cut(s)	130, 892, 1270, 1317
Kzo9I	GATC	6 cut(s)	130, 366, 523, 892, 1270, 1317
LguI	GCTCTTC	1 cut(s)	780
LmnI	GCTCC	2 cut(s)	695, 1025
Lsp1109I	GCAGC	8 cut(s)	42, 301, 672, 757, 808, 818, 1092, 1231
MaeI	CTAG	5 cut(s)	549, 638, 825, 951, 1338
MaeII	ACGT	2 cut(s)	502, 1403
MaeIII	GTNAC	3 cut(s)	94, 973, 1399
MalI	GATC	6 cut(s)	132, 368, 525, 894, 1272, 1319
MboI	GATC	6 cut(s)	130, 366, 523, 892, 1270, 1317
MhlI	GDGCHC	3 cut(s)	81, 104, 1100
MluCI	AATT	9 cut(s)	142, 319, 555, 600, 749, 871, 939, 1045, 1058
MlyI	GAGTC	2 cut(s)	878, 1303
MseI	TTAA	2 cut(s)	326, 612
MslI	CAYNNNNRTG	1 cut(s)	40
MspA1I	CMGCKG	3 cut(s)	136, 246, 809
MspI	CCGG	1 cut(s)	92
MspR9I	CCNGG	2 cut(s)	388, 1143
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	2 cut(s)	388, 1143
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	6 cut(s)	130, 366, 523, 892, 1270, 1317
NlaIII	CATG	6 cut(s)	45, 377, 595, 817, 1079, 1125
NlaIV	GGNNCC	4 cut(s)	30, 78, 1099, 1221
NmeAIII	GCCGAG	1 cut(s)	1317
NmuCI	GTSAC	2 cut(s)	94, 973
PasI	CCCWGGG	1 cut(s)	387
PciSI	GCTCTTC	1 cut(s)	780
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	4, 641, 986
PflMI	CCANNNNNTGG	1 cut(s)	25
PleI	GAGTC	2 cut(s)	878, 1303
PpsI	GAGTC	2 cut(s)	878, 1303
Psp6I	CCWGG	2 cut(s)	386, 1141
PspGI	CCWGG	2 cut(s)	386, 1141
PspN4I	GGNNCC	4 cut(s)	30, 78, 1099, 1221
PspPI	GGNCC	2 cut(s)	289, 932
PstI	CTGCAG	2 cut(s)	775, 973
PvuII	CAGCTG	2 cut(s)	136, 809
RsaI	GTAC	3 cut(s)	17, 765, 1179
RsaNI	GTAC	3 cut(s)	16, 764, 1178
RseI	CAYNNNNRTG	1 cut(s)	40
SapI	GCTCTTC	1 cut(s)	780
SaqAI	TTAA	2 cut(s)	326, 612
Sau3AI	GATC	6 cut(s)	130, 366, 523, 892, 1270, 1317
Sau96I	GGNCC	2 cut(s)	289, 932
SchI	GAGTC	2 cut(s)	878, 1303
ScrFI	CCNGG	2 cut(s)	388, 1143
SduI	GDGCHC	3 cut(s)	81, 104, 1100
SfcI	CTRYAG	3 cut(s)	771, 969, 1004
SinI	GGWCC	1 cut(s)	289
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	188, 650
SmoI	CTYRAG	2 cut(s)	188, 650
SpeI	ACTAGT	1 cut(s)	950
Sse9I	AATT	9 cut(s)	142, 319, 555, 600, 749, 871, 939, 1045, 1058
SsiI	CCGC	5 cut(s)	59, 117, 246, 404, 482
SspMI	CTAG	5 cut(s)	549, 638, 825, 951, 1338
StyD4I	CCNGG	2 cut(s)	386, 1141
StyI	CCWWGG	2 cut(s)	41, 1223
TaaI	ACNGT	3 cut(s)	357, 453, 658
TaiI	ACGT	2 cut(s)	505, 1406
TaqI	TCGA	5 cut(s)	49, 526, 854, 1239, 1277
TasI	AATT	9 cut(s)	142, 319, 555, 600, 749, 871, 939, 1045, 1058
TauI	GCSGC	2 cut(s)	61, 407
TfiI	GAWTC	3 cut(s)	4, 641, 986
Tru1I	TTAA	2 cut(s)	326, 612
Tru9I	TTAA	2 cut(s)	326, 612
TscAI	CASTG	3 cut(s)	312, 1161, 1332
TseFI	GTSAC	2 cut(s)	94, 973
TseI	GCWGC	8 cut(s)	55, 314, 685, 770, 806, 821, 1080, 1244
Tsp45I	GTSAC	2 cut(s)	94, 973
TspDTI	ATGAA	7 cut(s)	17, 221, 390, 531, 552, 608, 725
TspRI	CASTG	3 cut(s)	312, 1161, 1332
Van91I	CCANNNNNTGG	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	289
XagI	CCTNNNNNAGG	1 cut(s)	1106
XapI	RAATTY	6 cut(s)	142, 319, 749, 871, 1045, 1058
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XspI	CTAG	5 cut(s)	549, 638, 825, 951, 1338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.