Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

36343235 .. 36374841

Gene Structure 31607 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG240600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1173 bp

ATGAATCCAAATCCATACCAACCTATGGCACCTCCACCTCCATGGCCTCGAATGCTGCCGCCTAACCCTCCAATGATGCCGCCCAACGCTCCTATGGTGCCCCCCAACCCTCCGGTCACGAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGGCACTCTTGGCCTTGCAAAAGCAATGCAGAAAGAGCTTCAGATGCTGATGTTGATGAAAGATGGTAAGGGGTCTGATGATGCTTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAGATAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCCTTAATGGCGAAACTACGAGTTGAGCTTGAACCGTTTAGAGCGATCACGCACGAAATGTGTCCCTGGGAGGAAAAATCTGCGGCTGTAAGGTTATCCAATAAGATATGCAAGTCCAAGAGGAATAAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCTGAGCTTGAGACAGTATTGATTGTTGAGAAATTGCAAGAGTTGCGCTCCATCAGGATTGAGAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACAACCGAGAATTTCAGACCTGACTCTATTAATCAAAGCAGTGCTATAGGCGAGAGTAAGGAAAGTAAAGGCCCGACAATTCTAAGCACTAATGAAGGCAACTCTACTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTACAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTATTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

390

Amino Acids

44.37

Weight (kDa)

8.57

Isoelectric Point (pI)

54.85

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	129 - 259	8.5e-06	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	28, 97, 1115
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	6 cut(s)	59, 80, 138, 264, 422, 500
AcsI	RAATTY	5 cut(s)	163, 767, 889, 1063, 1076
AcuI	CTGAAG	2 cut(s)	179, 194
AfaI	GTAC	1 cut(s)	783
AfiI	CCNNNNNNNGG	3 cut(s)	25, 757, 1126
AgsI	TTSAA	3 cut(s)	283, 371, 776
AjnI	CCWGG	2 cut(s)	404, 1159
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AloI	GAACNNNNNNTCC	2 cut(s)	1002, 1034
Alw21I	GWGCWC	1 cut(s)	125
Alw26I	GTCTC	3 cut(s)	128, 646, 665
AlwNI	CAGNNNCTG	1 cut(s)	217
AoxI	GGCC	5 cut(s)	44, 181, 306, 739, 949
ApeKI	GCWGC	6 cut(s)	55, 332, 788, 824, 839, 1098
ApoI	RAATTY	5 cut(s)	163, 767, 889, 1063, 1076
AseI	ATTAAT	1 cut(s)	909
AspLEI	GCGC	2 cut(s)	495, 708
AspS9I	GGNCC	2 cut(s)	307, 950
AsuHPI	GGTGA	1 cut(s)	1141
BaeGI	GKGCMC	3 cut(s)	102, 176, 1118
BanI	GGYRCC	3 cut(s)	28, 97, 1115
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	612
Bbv12I	GWGCWC	1 cut(s)	125
BbvI	GCAGC	6 cut(s)	42, 319, 775, 826, 836, 1110
BccI	CCATC	3 cut(s)	227, 595, 719
BciT130I	CCWGG	2 cut(s)	406, 1161
BclI	TGATCA	1 cut(s)	151
BcoDI	GTCTC	3 cut(s)	128, 646, 665
BfaI	CTAG	3 cut(s)	567, 656, 843
BfmI	CTRYAG	4 cut(s)	789, 924, 987, 1022
BisI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
BlpI	GCTNAGC	1 cut(s)	864
BlsI	GCNGC	9 cut(s)	57, 60, 81, 334, 424, 790, 826, 841, 1100
Bme1390I	CCNGG	2 cut(s)	406, 1161
BmgT120I	GGNCC	2 cut(s)	307, 950
BmiI	GGNNCC	3 cut(s)	30, 99, 1117
BmrFI	CCNGG	2 cut(s)	406, 1161
BmsI	GCATC	8 cut(s)	66, 204, 241, 817, 826, 838, 1042, 1135
BpiI	GAAGAC	1 cut(s)	612
BplI	GAGNNNNNCTC	2 cut(s)	692, 724
Bpu1102I	GCTNAGC	1 cut(s)	864
BpuEI	CTTGAG	1 cut(s)	689
BsaI	GGTCTC	1 cut(s)	128
BsaJI	CCNNGG	3 cut(s)	41, 404, 405
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 757, 1126
Bse3DI	GCAATG	3 cut(s)	201, 495, 852
BseBI	CCWGG	2 cut(s)	406, 1161
BseDI	CCNNGG	3 cut(s)	41, 404, 405
BseGI	GGATG	4 cut(s)	766, 841, 853, 1150
BseLI	CCNNNNNNNGG	3 cut(s)	25, 757, 1126
BseMI	GCAATG	3 cut(s)	201, 495, 852
BseMII	CTCAG	3 cut(s)	264, 654, 855
BseRI	GAGGAG	3 cut(s)	812, 815, 818
BseSI	GKGCMC	3 cut(s)	102, 176, 1118
BseXI	GCAGC	6 cut(s)	42, 319, 775, 826, 836, 1110
BshFI	GGCC	5 cut(s)	46, 183, 308, 741, 951
BshNI	GGYRCC	3 cut(s)	28, 97, 1115
BsiHKAI	GWGCWC	1 cut(s)	125
BsiSI	CCGG	1 cut(s)	113
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	3 cut(s)	25, 757, 1126
BsmAI	GTCTC	3 cut(s)	128, 646, 665
BsmFI	GGGAC	1 cut(s)	387
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	5 cut(s)	46, 183, 308, 741, 951
Bso31I	GGTCTC	1 cut(s)	128
Bsp1286I	GDGCHC	4 cut(s)	102, 125, 176, 1118
Bsp143I	GATC	3 cut(s)	151, 384, 541
Bsp1720I	GCTNAGC	1 cut(s)	864
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	6 cut(s)	59, 80, 138, 264, 422, 500
BspANI	GGCC	5 cut(s)	46, 183, 308, 741, 951
BspCNI	CTCAG	3 cut(s)	265, 655, 856
BspLI	GGNNCC	3 cut(s)	30, 99, 1117
BspMAI	CTGCAG	2 cut(s)	793, 991
BspT107I	GGYRCC	3 cut(s)	28, 97, 1115
BspTNI	GGTCTC	1 cut(s)	128
BsrDI	GCAATG	3 cut(s)	201, 495, 852
BssECI	CCNNGG	3 cut(s)	41, 404, 405
BssMI	GATC	3 cut(s)	151, 384, 541
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	1 cut(s)	41
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	2 cut(s)	406, 1161
Bst4CI	ACNGT	4 cut(s)	375, 471, 676, 1040
Bst6I	CTCTTC	2 cut(s)	636, 750
BstAPI	GCANNNNNTGC	1 cut(s)	703
BstC8I	GCNNGC	1 cut(s)	625
BstDEI	CTNAG	4 cut(s)	273, 663, 864, 962
BstDSI	CCRYGG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	1124
BstF5I	GGATG	4 cut(s)	766, 841, 853, 1150
BstHHI	GCGC	2 cut(s)	495, 708
BstKTI	GATC	3 cut(s)	154, 387, 544
BstMAI	GTCTC	3 cut(s)	128, 646, 665
BstMBI	GATC	3 cut(s)	151, 384, 541
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 154, 180, 205, 214, 703, 821, 848, 1052
BstNI	CCWGG	2 cut(s)	406, 1161
BstSCI	CCNGG	2 cut(s)	404, 1159
BstSFI	CTRYAG	4 cut(s)	789, 924, 987, 1022
BstSLI	GKGCMC	3 cut(s)	102, 176, 1118
BstV1I	GCAGC	6 cut(s)	42, 319, 775, 826, 836, 1110
BstV2I	GAAGAC	1 cut(s)	612
BstXI	CCANNNNNNTGG	1 cut(s)	42
BsuRI	GGCC	5 cut(s)	46, 183, 308, 741, 951
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	4 cut(s)	766, 841, 853, 1150
BtsI	GCAGTG	1 cut(s)	925
BtsIMutI	CAGTG	3 cut(s)	330, 925, 1045
Cac8I	GCNNGC	1 cut(s)	625
CaiI	CAGNNNCTG	1 cut(s)	217
CfoI	GCGC	2 cut(s)	495, 708
Cfr13I	GGNCC	2 cut(s)	307, 950
Csp6I	GTAC	1 cut(s)	782
CviAII	CATG	5 cut(s)	42, 610, 832, 1094, 1140
CviQI	GTAC	1 cut(s)	782
DdeI	CTNAG	4 cut(s)	273, 663, 864, 962
DpnI	GATC	3 cut(s)	153, 386, 543
DpnII	GATC	3 cut(s)	151, 384, 541
Eam1104I	CTCTTC	2 cut(s)	636, 750
EarI	CTCTTC	2 cut(s)	636, 750
Eco130I	CCWWGG	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	128
Eco57I	CTGAAG	2 cut(s)	179, 194
EcoNI	CCTNNNNNAGG	1 cut(s)	1124
EcoRII	CCWGG	2 cut(s)	404, 1159
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	5 cut(s)	45, 613, 835, 1097, 1143
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	5 cut(s)	41, 609, 831, 1093, 1139
FauI	CCCGC	1 cut(s)	257
FbaI	TGATCA	1 cut(s)	151
Fnu4HI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
FokI	GGATG	4 cut(s)	773, 848, 860, 1157
Fsp4HI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
FspBI	CTAG	3 cut(s)	567, 656, 843
GlaI	GCGC	2 cut(s)	494, 707
GluI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
HaeIII	GGCC	5 cut(s)	46, 183, 308, 741, 951
HapII	CCGG	1 cut(s)	113
HhaI	GCGC	2 cut(s)	495, 708
Hin1II	CATG	5 cut(s)	45, 613, 835, 1097, 1143
Hin6I	GCGC	2 cut(s)	493, 706
HinP1I	GCGC	2 cut(s)	493, 706
HinfI	GANTC	4 cut(s)	4, 659, 902, 1004
HpaII	CCGG	1 cut(s)	113
HphI	GGTGA	1 cut(s)	1141
Hpy188I	TCNGA	5 cut(s)	213, 247, 274, 664, 896
Hpy188III	TCNNGA	5 cut(s)	118, 545, 715, 773, 1008
HpyAV	CCTTC	3 cut(s)	518, 968, 1161
HpyCH4III	ACNGT	4 cut(s)	375, 471, 676, 1040
HpyCH4IV	ACGT	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 154, 180, 205, 214, 703, 821, 848, 1052
HpyF3I	CTNAG	4 cut(s)	273, 663, 864, 962
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	5 cut(s)	45, 613, 835, 1097, 1143
HspAI	GCGC	2 cut(s)	493, 706
Ksp22I	TGATCA	1 cut(s)	151
Kzo9I	GATC	3 cut(s)	151, 384, 541
LmnI	GCTCC	4 cut(s)	94, 713, 805, 1043
Lsp1109I	GCAGC	6 cut(s)	42, 319, 775, 826, 836, 1110
LweI	GCATC	8 cut(s)	66, 204, 241, 817, 826, 838, 1042, 1135
MaeI	CTAG	3 cut(s)	567, 656, 843
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	3 cut(s)	115, 991, 1034
MalI	GATC	3 cut(s)	153, 386, 543
MboI	GATC	3 cut(s)	151, 384, 541
MboII	GAAGA	8 cut(s)	172, 304, 617, 625, 653, 742, 767, 1146
MhlI	GDGCHC	4 cut(s)	102, 125, 176, 1118
MluCI	AATT	9 cut(s)	163, 573, 618, 692, 767, 889, 957, 1063, 1076
MlyI	GAGTC	1 cut(s)	896
MseI	TTAA	3 cut(s)	344, 630, 909
MslI	CAYNNNNRTG	1 cut(s)	40
MspA1I	CMGCKG	3 cut(s)	157, 264, 827
MspI	CCGG	1 cut(s)	113
MspR9I	CCNGG	2 cut(s)	406, 1161
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	2 cut(s)	406, 1161
MwoI	GCNNNNNNNGC	9 cut(s)	52, 154, 180, 205, 214, 703, 821, 848, 1052
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	3 cut(s)	151, 384, 541
NlaIII	CATG	5 cut(s)	45, 613, 835, 1097, 1143
NlaIV	GGNNCC	3 cut(s)	30, 99, 1117
NmuCI	GTSAC	2 cut(s)	115, 991
PasI	CCCWGGG	1 cut(s)	405
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	4, 659, 1004
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	9 cut(s)	57, 60, 81, 334, 424, 790, 826, 841, 1100
PleI	GAGTC	1 cut(s)	896
PpsI	GAGTC	1 cut(s)	896
PshBI	ATTAAT	1 cut(s)	909
Psp6I	CCWGG	2 cut(s)	404, 1159
PspGI	CCWGG	2 cut(s)	404, 1159
PspN4I	GGNNCC	3 cut(s)	30, 99, 1117
PspPI	GGNCC	2 cut(s)	307, 950
PstI	CTGCAG	2 cut(s)	793, 991
PstNI	CAGNNNCTG	1 cut(s)	217
PvuII	CAGCTG	2 cut(s)	157, 827
RsaI	GTAC	1 cut(s)	783
RsaNI	GTAC	1 cut(s)	782
RseI	CAYNNNNRTG	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	344, 630, 909
SatI	GCNGC	9 cut(s)	56, 59, 80, 333, 423, 789, 825, 840, 1099
Sau3AI	GATC	3 cut(s)	151, 384, 541
Sau96I	GGNCC	2 cut(s)	307, 950
SchI	GAGTC	1 cut(s)	896
ScrFI	CCNGG	2 cut(s)	406, 1161
SduI	GDGCHC	4 cut(s)	102, 125, 176, 1118
SfaNI	GCATC	8 cut(s)	66, 204, 241, 817, 826, 838, 1042, 1135
SfcI	CTRYAG	4 cut(s)	789, 924, 987, 1022
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	9 cut(s)	163, 573, 618, 692, 767, 889, 957, 1063, 1076
SsiI	CCGC	6 cut(s)	59, 80, 138, 264, 422, 500
SspMI	CTAG	3 cut(s)	567, 656, 843
StyD4I	CCNGG	2 cut(s)	404, 1159
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	4 cut(s)	375, 471, 676, 1040
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	3 cut(s)	49, 544, 872
TasI	AATT	9 cut(s)	163, 573, 618, 692, 767, 889, 957, 1063, 1076
TauI	GCSGC	3 cut(s)	61, 82, 425
TfiI	GAWTC	3 cut(s)	4, 659, 1004
Tru1I	TTAA	3 cut(s)	344, 630, 909
Tru9I	TTAA	3 cut(s)	344, 630, 909
TscAI	CASTG	3 cut(s)	330, 925, 1045
TseFI	GTSAC	2 cut(s)	115, 991
TseI	GCWGC	6 cut(s)	55, 332, 788, 824, 839, 1098
Tsp45I	GTSAC	2 cut(s)	115, 991
TspDTI	ATGAA	7 cut(s)	17, 242, 549, 570, 626, 743, 987
TspRI	CASTG	3 cut(s)	330, 925, 1045
Van91I	CCANNNNNTGG	1 cut(s)	25
VspI	ATTAAT	1 cut(s)	909
XagI	CCTNNNNNAGG	1 cut(s)	1124
XapI	RAATTY	5 cut(s)	163, 767, 889, 1063, 1076
XcmI	CCANNNNNNNNNTGG	2 cut(s)	91, 598
XspI	CTAG	3 cut(s)	567, 656, 843

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.