Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Forward (+)

36874476 .. 36875311

Gene Structure 836 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 546 bp

ATGGAAAAGTTGTTGGAGTTACTTTTAAGGAATGGACATGAGTATAAAAAACATAGGAGGTCAAATGTCATTGCAAGTCTTGCTGCGGCTTTTCAATTATCAGATTTCGCTAAGGTTAATCTTGGTGTGGCTAGGGCTGCAGCTATTCAAGATGATCACTGGTATATGGTGGGGCGTTTGTTAGAGCCAAAAGCCAATCTTCCCAGTTTCAAGGGCACTATTCCAAAGATTTTTAGGATCAAATCAGGTCTGATCATTAGTGATGTGGAAGATCGATTTATCTTTCAATTTGATCGTGAATCAGAAAGAAATCAGATACTTCATGGGGGCCCTTGGTTTTATCGAAACACCATGTTGATTTTGGCTGAGTACAATGGAGTAGGTTCAGTAGAGACTATTCCTCTGAGATCGATTGAGACTTGGGTTGCGGTGAAAAGTCTTGCCCTTGCACTGCTCAACAAGGTGGCCCTGTCACTTGTTAGTTCTTCCATAGGGAGGGTTATAAGATTTGATCAAGATGCTCTTCATCGTAAGGAGGCAGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

181

Amino Acids

20.52

Weight (kDa)

9.55

Isoelectric Point (pI)

32.05

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF4283	PF14111	54 - 125	6.8e-10	Domain of unknown function (DUF4283)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	503
AciI	CCGC	2 cut(s)	86, 428
AclWI	GGATC	1 cut(s)	245
AfaI	GTAC	1 cut(s)	371
AfiI	CCNNNNNNNGG	1 cut(s)	495
AgsI	TTSAA	4 cut(s)	95, 149, 211, 287
AluBI	AGCT	1 cut(s)	143
AluI	AGCT	1 cut(s)	143
Alw26I	GTCTC	2 cut(s)	386, 410
AlwI	GGATC	1 cut(s)	245
AoxI	GGCC	2 cut(s)	328, 465
ApaI	GGGCCC	1 cut(s)	332
ApeKI	GCWGC	3 cut(s)	83, 137, 140
AspS9I	GGNCC	3 cut(s)	328, 329, 466
AsuHPI	GGTGA	1 cut(s)	442
BaeGI	GKGCMC	2 cut(s)	218, 332
BanII	GRGCYC	1 cut(s)	332
BbvI	GCAGC	3 cut(s)	70, 124, 152
BclI	TGATCA	3 cut(s)	154, 252, 511
BcoDI	GTCTC	2 cut(s)	386, 410
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	138
BisI	GCNGC	4 cut(s)	84, 87, 138, 141
BlsI	GCNGC	4 cut(s)	85, 88, 139, 142
BmgT120I	GGNCC	3 cut(s)	328, 329, 466
BmiI	GGNNCC	2 cut(s)	329, 330
BmrI	ACTGGG	1 cut(s)	198
BmsI	GCATC	1 cut(s)	508
BmuI	ACTGGG	1 cut(s)	198
Bpu10I	CCTNAGC	1 cut(s)	111
Bsa29I	ATCGAT	2 cut(s)	274, 410
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	495
Bse1I	ACTGG	2 cut(s)	164, 204
Bse3DI	GCAATG	1 cut(s)	69
BseCI	ATCGAT	2 cut(s)	274, 410
BseDI	CCNNGG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	495
BseMI	GCAATG	1 cut(s)	69
BseMII	CTCAG	2 cut(s)	357, 395
BseNI	ACTGG	2 cut(s)	164, 204
BseSI	GKGCMC	2 cut(s)	218, 332
BseXI	GCAGC	3 cut(s)	70, 124, 152
BshFI	GGCC	2 cut(s)	330, 467
BshVI	ATCGAT	2 cut(s)	274, 410
BslI	CCNNNNNNNGG	1 cut(s)	495
BsmAI	GTCTC	2 cut(s)	386, 410
BsnI	GGCC	2 cut(s)	330, 467
Bsp120I	GGGCCC	1 cut(s)	328
Bsp1286I	GDGCHC	2 cut(s)	218, 332
Bsp143I	GATC	7 cut(s)	154, 237, 252, 271, 292, 407, 511
BspACI	CCGC	2 cut(s)	86, 428
BspANI	GGCC	2 cut(s)	330, 467
BspCNI	CTCAG	2 cut(s)	358, 396
BspDI	ATCGAT	2 cut(s)	274, 410
BspLI	GGNNCC	2 cut(s)	329, 330
BspMAI	CTGCAG	1 cut(s)	142
BspPI	GGATC	1 cut(s)	245
BspQI	GCTCTTC	1 cut(s)	528
BsrDI	GCAATG	1 cut(s)	69
BsrI	ACTGG	2 cut(s)	164, 204
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	7 cut(s)	154, 237, 252, 271, 292, 407, 511
BssT1I	CCWWGG	1 cut(s)	332
Bst6I	CTCTTC	1 cut(s)	528
BstAPI	GCANNNNNTGC	1 cut(s)	80
BstDEI	CTNAG	3 cut(s)	111, 366, 404
BstKTI	GATC	7 cut(s)	157, 240, 255, 274, 295, 410, 514
BstMAI	GTCTC	2 cut(s)	386, 410
BstMBI	GATC	7 cut(s)	154, 237, 252, 271, 292, 407, 511
BstMWI	GCNNNNNNNGC	2 cut(s)	80, 137
BstSFI	CTRYAG	1 cut(s)	138
BstSLI	GKGCMC	2 cut(s)	218, 332
BstV1I	GCAGC	3 cut(s)	70, 124, 152
Bsu15I	ATCGAT	2 cut(s)	274, 410
BsuRI	GGCC	2 cut(s)	330, 467
BsuTUI	ATCGAT	2 cut(s)	274, 410
BtsI	GCAGTG	1 cut(s)	449
BtsIMutI	CAGTG	2 cut(s)	157, 449
Cfr13I	GGNCC	3 cut(s)	328, 329, 466
ClaI	ATCGAT	2 cut(s)	274, 410
Csp6I	GTAC	1 cut(s)	370
CviAII	CATG	3 cut(s)	38, 323, 352
CviJI	RGCY	9 cut(s)	89, 131, 137, 143, 187, 194, 330, 365, 467
CviKI_1	RGCY	9 cut(s)	89, 131, 137, 143, 187, 194, 330, 365, 467
CviQI	GTAC	1 cut(s)	370
DdeI	CTNAG	3 cut(s)	111, 366, 404
DpnI	GATC	7 cut(s)	156, 239, 254, 273, 294, 409, 513
DpnII	GATC	7 cut(s)	154, 237, 252, 271, 292, 407, 511
Eam1104I	CTCTTC	1 cut(s)	528
EarI	CTCTTC	1 cut(s)	528
Eco130I	CCWWGG	1 cut(s)	332
Eco24I	GRGCYC	1 cut(s)	332
EcoO109I	RGGNCCY	2 cut(s)	328, 329
EcoT14I	CCWWGG	1 cut(s)	332
EcoT38I	GRGCYC	1 cut(s)	332
ErhI	CCWWGG	1 cut(s)	332
FaeI	CATG	3 cut(s)	41, 326, 355
FaiI	YATR	9 cut(s)	39, 45, 54, 165, 167, 324, 353, 491, 503
FalI	AAGNNNNNCTT	4 cut(s)	183, 215, 507, 539
FatI	CATG	3 cut(s)	37, 322, 351
FbaI	TGATCA	3 cut(s)	154, 252, 511
Fnu4HI	GCNGC	4 cut(s)	84, 87, 138, 141
FriOI	GRGCYC	1 cut(s)	332
Fsp4HI	GCNGC	4 cut(s)	84, 87, 138, 141
FspBI	CTAG	1 cut(s)	132
GluI	GCNGC	4 cut(s)	84, 87, 138, 141
HaeIII	GGCC	2 cut(s)	330, 467
Hin1II	CATG	3 cut(s)	41, 326, 355
HinfI	GANTC	1 cut(s)	299
HphI	GGTGA	1 cut(s)	442
Hpy188I	TCNGA	5 cut(s)	103, 252, 304, 315, 405
Hpy188III	TCNNGA	3 cut(s)	149, 296, 515
HpyCH4V	TGCA	3 cut(s)	74, 140, 449
HpyF10VI	GCNNNNNNNGC	2 cut(s)	80, 137
HpyF3I	CTNAG	3 cut(s)	111, 366, 404
Hsp92II	CATG	3 cut(s)	41, 326, 355
Ksp22I	TGATCA	3 cut(s)	154, 252, 511
Kzo9I	GATC	7 cut(s)	154, 237, 252, 271, 292, 407, 511
LguI	GCTCTTC	1 cut(s)	528
LpnPI	CCDG	4 cut(s)	145, 217, 231, 482
Lsp1109I	GCAGC	3 cut(s)	70, 124, 152
LweI	GCATC	1 cut(s)	508
MaeI	CTAG	1 cut(s)	132
MaeIII	GTNAC	2 cut(s)	18, 471
MalI	GATC	7 cut(s)	156, 239, 254, 273, 294, 409, 513
MboI	GATC	7 cut(s)	154, 237, 252, 271, 292, 407, 511
MboII	GAAGA	4 cut(s)	191, 281, 477, 515
MhlI	GDGCHC	2 cut(s)	218, 332
MluCI	AATT	2 cut(s)	95, 287
MnlI	CCTC	4 cut(s)	51, 411, 489, 529
MseI	TTAA	2 cut(s)	26, 117
MwoI	GCNNNNNNNGC	2 cut(s)	80, 137
NdeII	GATC	7 cut(s)	154, 237, 252, 271, 292, 407, 511
NlaIII	CATG	3 cut(s)	41, 326, 355
NlaIV	GGNNCC	2 cut(s)	329, 330
NmuCI	GTSAC	1 cut(s)	471
PciSI	GCTCTTC	1 cut(s)	528
PfeI	GAWTC	1 cut(s)	299
PkrI	GCNGC	4 cut(s)	85, 88, 139, 142
PsiI	TTATAA	1 cut(s)	503
PspN4I	GGNNCC	2 cut(s)	329, 330
PspOMI	GGGCCC	1 cut(s)	328
PspPI	GGNCC	3 cut(s)	328, 329, 466
PstI	CTGCAG	1 cut(s)	142
RsaI	GTAC	1 cut(s)	371
RsaNI	GTAC	1 cut(s)	370
SapI	GCTCTTC	1 cut(s)	528
SaqAI	TTAA	2 cut(s)	26, 117
SatI	GCNGC	4 cut(s)	84, 87, 138, 141
Sau3AI	GATC	7 cut(s)	154, 237, 252, 271, 292, 407, 511
Sau96I	GGNCC	3 cut(s)	328, 329, 466
SduI	GDGCHC	2 cut(s)	218, 332
SetI	ASST	6 cut(s)	62, 117, 145, 250, 385, 465
SfaNI	GCATC	1 cut(s)	508
SfcI	CTRYAG	1 cut(s)	138
Sse9I	AATT	2 cut(s)	95, 287
SsiI	CCGC	2 cut(s)	86, 428
SspMI	CTAG	1 cut(s)	132
StyI	CCWWGG	1 cut(s)	332
TaqI	TCGA	3 cut(s)	274, 343, 410
TasI	AATT	2 cut(s)	95, 287
TatI	WGTACW	1 cut(s)	369
TauI	GCSGC	1 cut(s)	89
TfiI	GAWTC	1 cut(s)	299
Tru1I	TTAA	2 cut(s)	26, 117
Tru9I	TTAA	2 cut(s)	26, 117
TscAI	CASTG	2 cut(s)	164, 456
TseFI	GTSAC	1 cut(s)	471
TseI	GCWGC	3 cut(s)	83, 137, 140
Tsp45I	GTSAC	1 cut(s)	471
TspDTI	ATGAA	2 cut(s)	311, 515
TspRI	CASTG	2 cut(s)	164, 456
XcmI	CCANNNNNNNNNTGG	1 cut(s)	358
XspI	CTAG	1 cut(s)	132

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.