Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

36905148 .. 36909646

Gene Structure 4499 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0259600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1077 bp

ATGACTTTGATGGTTTGGCTTTGGGGAGTGAACTTATGGGTTTTTTCGCAGGCCAACATTGGCTATGCAAAAATATTTGATCTTGATCAAAATCATCTCACTCACAAAGAAGTATGGAAGTGTAGCACTTGGATGACCATCATTGTCCCTACTAGCATGACAGCATACCTTTACCTTTACTCACACGGAAAATTATTATTGGCTGCATTACTACCAGTGTCCCTGTATATTGCTGTTGCTATAGTTCTGATATCCCCCTTTGATATCTTTTATTTGTCATCTCGGTACTTCTTATTGAGGACACTGTGCAGGATAGCTCTTCCAGTGCAGGCTATATCATTTCCTGACTTTTTTGTGGCTGAAGTTTTAACTTCTATGTCTAAGGTGTTTTCAGATTTGGAACGTTCAGTCTGCAGAATGGTTCATGGGCTGGTTGCCACTATTGCATGGCTTGAAGCTGATTCAGTTTGTGGCAGCCACTCAATTGGAATCCCTCTAGTGCTTGTTTTTCCTTATGTTTGCCGTTTATTTCAATGCCTACGTCAATACAAGGATACAAAAGACAAGACAAACCTTTTCAATGCTTTAAAATATTCGACTGCAGTCCCAGTGATTTTTCTTTCGGCCCTTAAATATCATGTCTTCCCTGATAGGTGGTCCAACTTTTATGAGCCGCTTTGGCTTCTGTCTAGTATTGTTAACTCGCTGTATTCATTCTACTGGGACATAGCTCAAGATTGGGACTTGAGTGGCTTCACTCGAATTTTCAAGTTCAGCAGACCGAGTTTAGTTTCCTACTTATTATATGAACAAAAATGGGTATATTTTTGGGCAATAGGAAGCAACCTGATCTTGCGATGTGCATGGACATACAAATTCTCTGCTCATCTTCGTCATAACTACATGACTGTATTTGCAATCACTGCATTGGAGATTCTTCGACGCTTCCAATGGGTATTCTTTCGAGTAGAAAATGAGTGGAATAAGATTAACAAGTCCAGTTTTGACCCCCTACCCATGACTATCATCCAAACAGAAGAAGAGACATTGCTTGACGCTAACAGTCACAGTGTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

358

Amino Acids

41.86

Weight (kDa)

8.56

Isoelectric Point (pI)

40.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
EXS	PF03124	2 - 327	1.3e-90	EXS family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	674
AclI	AACGTT	1 cut(s)	403
AcsI	RAATTY	2 cut(s)	762, 875
AcuI	CTGAAG	1 cut(s)	381
AfaI	GTAC	1 cut(s)	287
AgsI	TTSAA	4 cut(s)	455, 533, 580, 769
AluBI	AGCT	3 cut(s)	317, 458, 731
AluI	AGCT	3 cut(s)	317, 458, 731
Alw26I	GTCTC	1 cut(s)	1037
AoxI	GGCC	2 cut(s)	51, 624
ApeKI	GCWGC	2 cut(s)	203, 474
ApoI	RAATTY	2 cut(s)	762, 875
AspS9I	GGNCC	2 cut(s)	625, 657
AvaII	GGWCC	1 cut(s)	657
BbsI	GAAGAC	1 cut(s)	634
BbvI	GCAGC	2 cut(s)	190, 486
BccI	CCATC	2 cut(s)	4, 146
BceAI	ACGGC	1 cut(s)	507
BciVI	GTATCC	1 cut(s)	547
BclI	TGATCA	1 cut(s)	85
BcoDI	GTCTC	1 cut(s)	1037
BfaI	CTAG	3 cut(s)	153, 497, 690
BfmI	CTRYAG	3 cut(s)	240, 412, 600
BfuI	GTATCC	1 cut(s)	547
BglI	GCCNNNNNGGC	1 cut(s)	679
BisI	GCNGC	3 cut(s)	204, 475, 674
BlsI	GCNGC	3 cut(s)	205, 476, 675
Bme18I	GGWCC	1 cut(s)	657
BmgT120I	GGNCC	2 cut(s)	625, 657
BmrI	ACTGGG	2 cut(s)	602, 730
BmuI	ACTGGG	2 cut(s)	602, 730
BoxI	GACNNNNGTC	1 cut(s)	602
BpiI	GAAGAC	1 cut(s)	634
BpuEI	CTTGAG	2 cut(s)	717, 766
BsaBI	GATNNNNATC	3 cut(s)	84, 90, 137
Bse1I	ACTGG	5 cut(s)	215, 323, 608, 725, 999
Bse3DI	GCAATG	1 cut(s)	1046
Bse8I	GATNNNNATC	3 cut(s)	84, 90, 137
BseGI	GGATG	2 cut(s)	138, 1026
BseJI	GATNNNNATC	3 cut(s)	84, 90, 137
BseMI	GCAATG	1 cut(s)	1046
BseNI	ACTGG	5 cut(s)	215, 323, 608, 725, 999
BseXI	GCAGC	2 cut(s)	190, 486
BsgI	GTGCAG	2 cut(s)	328, 347
BshFI	GGCC	2 cut(s)	53, 626
BslFI	GGGAC	5 cut(s)	131, 205, 590, 737, 755
BsmAI	GTCTC	1 cut(s)	1037
BsmFI	GGGAC	5 cut(s)	131, 205, 590, 737, 755
BsnI	GGCC	2 cut(s)	53, 626
Bsp143I	GATC	3 cut(s)	79, 85, 849
BspACI	CCGC	1 cut(s)	674
BspANI	GGCC	2 cut(s)	53, 626
BspMAI	CTGCAG	2 cut(s)	416, 604
BspQI	GCTCTTC	1 cut(s)	324
BsrDI	GCAATG	1 cut(s)	1046
BsrI	ACTGG	5 cut(s)	215, 323, 608, 725, 999
BssMI	GATC	3 cut(s)	79, 85, 849
Bst4CI	ACNGT	4 cut(s)	306, 910, 1064, 1070
Bst6I	CTCTTC	2 cut(s)	324, 1035
BstAPI	GCANNNNNTGC	1 cut(s)	923
BstC8I	GCNNGC	2 cut(s)	51, 330
BstDEI	CTNAG	1 cut(s)	381
BstF5I	GGATG	2 cut(s)	138, 1026
BstKTI	GATC	3 cut(s)	82, 88, 852
BstMAI	GTCTC	1 cut(s)	1037
BstMBI	GATC	3 cut(s)	79, 85, 849
BstMWI	GCNNNNNNNGC	3 cut(s)	443, 679, 923
BstPAI	GACNNNNGTC	1 cut(s)	602
BstSFI	CTRYAG	3 cut(s)	240, 412, 600
BstV1I	GCAGC	2 cut(s)	190, 486
BstV2I	GAAGAC	1 cut(s)	634
BstXI	CCANNNNNNTGG	1 cut(s)	485
BsuI	GTATCC	1 cut(s)	547
BsuRI	GGCC	2 cut(s)	53, 626
BtgZI	GCGATG	1 cut(s)	871
BtsCI	GGATG	2 cut(s)	138, 1026
BtsI	GCAGTG	1 cut(s)	921
BtsIMutI	CAGTG	6 cut(s)	222, 302, 330, 615, 921, 1075
Cac8I	GCNNGC	2 cut(s)	51, 330
Cfr13I	GGNCC	2 cut(s)	625, 657
CseI	GACGC	2 cut(s)	951, 1064
Csp6I	GTAC	1 cut(s)	286
CviAII	CATG	7 cut(s)	157, 425, 447, 638, 864, 904, 1018
CviQI	GTAC	1 cut(s)	286
DdeI	CTNAG	1 cut(s)	381
DpnI	GATC	3 cut(s)	81, 87, 851
DpnII	GATC	3 cut(s)	79, 85, 849
DraI	TTTAAA	1 cut(s)	588
Eam1104I	CTCTTC	2 cut(s)	324, 1035
EarI	CTCTTC	2 cut(s)	324, 1035
Eco32I	GATATC	2 cut(s)	252, 265
Eco47I	GGWCC	1 cut(s)	657
Eco57I	CTGAAG	1 cut(s)	381
EcoRV	GATATC	2 cut(s)	252, 265
FaeI	CATG	7 cut(s)	160, 428, 450, 641, 867, 907, 1021
FaqI	GGGAC	5 cut(s)	131, 205, 590, 737, 755
FatI	CATG	7 cut(s)	156, 424, 446, 637, 863, 903, 1017
FbaI	TGATCA	1 cut(s)	85
Fnu4HI	GCNGC	3 cut(s)	204, 475, 674
FokI	GGATG	2 cut(s)	145, 1013
Fsp4HI	GCNGC	3 cut(s)	204, 475, 674
FspBI	CTAG	3 cut(s)	153, 497, 690
GluI	GCNGC	3 cut(s)	204, 475, 674
HaeIII	GGCC	2 cut(s)	53, 626
HgaI	GACGC	2 cut(s)	951, 1064
Hin1II	CATG	7 cut(s)	160, 428, 450, 641, 867, 907, 1021
HincII	GTYRAC	1 cut(s)	700
HindII	GTYRAC	1 cut(s)	700
HinfI	GANTC	3 cut(s)	461, 489, 934
HpaI	GTTAAC	1 cut(s)	700
Hpy166II	GTNNAC	2 cut(s)	31, 700
Hpy188I	TCNGA	2 cut(s)	249, 394
Hpy188III	TCNNGA	3 cut(s)	83, 344, 734
Hpy8I	GTNNAC	2 cut(s)	31, 700
Hpy99I	CGWCG	1 cut(s)	945
HpyCH4III	ACNGT	4 cut(s)	306, 910, 1064, 1070
HpyCH4IV	ACGT	2 cut(s)	403, 541
HpyF10VI	GCNNNNNNNGC	3 cut(s)	443, 679, 923
HpyF3I	CTNAG	1 cut(s)	381
HpySE526I	ACGT	2 cut(s)	403, 541
Hsp92II	CATG	7 cut(s)	160, 428, 450, 641, 867, 907, 1021
Ksp22I	TGATCA	1 cut(s)	85
KspAI	GTTAAC	1 cut(s)	700
Kzo9I	GATC	3 cut(s)	79, 85, 849
LguI	GCTCTTC	1 cut(s)	324
Lsp1109I	GCAGC	2 cut(s)	190, 486
MaeI	CTAG	3 cut(s)	153, 497, 690
MaeII	ACGT	2 cut(s)	403, 541
MaeIII	GTNAC	1 cut(s)	1064
MalI	GATC	3 cut(s)	81, 87, 851
MboI	GATC	3 cut(s)	79, 85, 849
MboII	GAAGA	6 cut(s)	311, 634, 881, 929, 1049, 1052
MfeI	CAATTG	1 cut(s)	483
MluCI	AATT	4 cut(s)	191, 483, 762, 875
MmeI	TCCRAC	1 cut(s)	684
MnlI	CCTC	2 cut(s)	291, 504
MseI	TTAA	5 cut(s)	368, 587, 630, 699, 990
MslI	CAYNNNNRTG	1 cut(s)	131
MunI	CAATTG	1 cut(s)	483
MwoI	GCNNNNNNNGC	3 cut(s)	443, 679, 923
NdeII	GATC	3 cut(s)	79, 85, 849
NlaIII	CATG	7 cut(s)	160, 428, 450, 641, 867, 907, 1021
NmuCI	GTSAC	1 cut(s)	1064
PciSI	GCTCTTC	1 cut(s)	324
PfeI	GAWTC	3 cut(s)	461, 489, 934
PkrI	GCNGC	3 cut(s)	205, 476, 675
PshAI	GACNNNNGTC	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	403
PspPI	GGNCC	2 cut(s)	625, 657
PstI	CTGCAG	2 cut(s)	416, 604
RsaI	GTAC	1 cut(s)	287
RsaNI	GTAC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	131
SapI	GCTCTTC	1 cut(s)	324
SaqAI	TTAA	5 cut(s)	368, 587, 630, 699, 990
SatI	GCNGC	3 cut(s)	204, 475, 674
Sau3AI	GATC	3 cut(s)	79, 85, 849
Sau96I	GGNCC	2 cut(s)	625, 657
SfcI	CTRYAG	3 cut(s)	240, 412, 600
SinI	GGWCC	1 cut(s)	657
SmiMI	CAYNNNNRTG	1 cut(s)	131
SmlI	CTYRAG	2 cut(s)	732, 745
SmoI	CTYRAG	2 cut(s)	732, 745
Sse9I	AATT	4 cut(s)	191, 483, 762, 875
SsiI	CCGC	1 cut(s)	674
SspI	AATATT	2 cut(s)	75, 593
SspMI	CTAG	3 cut(s)	153, 497, 690
TaaI	ACNGT	4 cut(s)	306, 910, 1064, 1070
TaiI	ACGT	2 cut(s)	406, 544
TaqI	TCGA	4 cut(s)	596, 760, 940, 964
TaqII	GACCGA	1 cut(s)	796
TasI	AATT	4 cut(s)	191, 483, 762, 875
TauI	GCSGC	1 cut(s)	676
TfiI	GAWTC	3 cut(s)	461, 489, 934
Tru1I	TTAA	5 cut(s)	368, 587, 630, 699, 990
Tru9I	TTAA	5 cut(s)	368, 587, 630, 699, 990
TscAI	CASTG	6 cut(s)	222, 309, 330, 615, 928, 1075
TseFI	GTSAC	1 cut(s)	1064
TseI	GCWGC	2 cut(s)	203, 474
Tsp45I	GTSAC	1 cut(s)	1064
TspDTI	ATGAA	3 cut(s)	413, 702, 822
TspGWI	ACGGA	1 cut(s)	201
TspRI	CASTG	6 cut(s)	222, 309, 330, 615, 928, 1075
VpaK11BI	GGWCC	1 cut(s)	657
XapI	RAATTY	2 cut(s)	762, 875
XspI	CTAG	3 cut(s)	153, 497, 690

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.