Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr1

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

50604299 .. 50606619

Gene Structure 2321 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw1G024400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1188 bp

ATGAATCCAAATCCATACCAACCTATGGCACCTCCACCTCCATGGCCTCGAATGTTGCCACCTAACCCTCCAATGATGCCCCCCAACGCTCCTATGGTGCCTCCTAACCCTCCGGTCACGAGCACTTTCTGGGAGACTGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATCAGAGATGGTAAGGGGTCTGATGATGCTTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAGATAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCTTTAATGGCTAAACTACGAGTTGAGCTTGAACCATTTAGAGTGATCACGCACGAAATGTGTCCCTGGGAGGAAAAAACTGCGGCTGTCCAATTATCCAATAAGATATGCAAGTCCAAGAGGAATAAACAGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGTTTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACCAGAATCCGAGCTTGAGACAGTATTGATTGTTGAGAAATTGCAAGAGTTGTGCTCCATCAGGATTGAAAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAACCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACAACCGAGAATTTCAGACCTGACTCTATTAATCGAAGCAGTGCTATAGGCGAGAGTAAGGAAATCACTAACAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTACAGTGGAGCTTATGATGCTGTGGCAAATTTACCTTTGGAATTTTATCACTATTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGGGGAAGCCGGATACCAGGACACTGGGTGCAACCTCCACCTCCTGCAGATGATATCTGGGCCTCCTACCTTCTGCAACCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

395

Amino Acids

45.17

Weight (kDa)

6.66

Isoelectric Point (pI)

55.55

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	131 - 391	3e-19	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	28, 97, 1055
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	3 cut(s)	264, 422, 500
AcsI	RAATTY	5 cut(s)	163, 755, 877, 1003, 1016
AcuI	CTGAAG	1 cut(s)	179
AdeI	CACNNNGTG	1 cut(s)	1129
AfaI	GTAC	1 cut(s)	771
AfiI	CCNNNNNNNGG	3 cut(s)	25, 745, 1066
AgsI	TTSAA	4 cut(s)	283, 371, 710, 764
AjnI	CCWGG	3 cut(s)	404, 1099, 1117
AjuI	GAANNNNNNNTTGG	2 cut(s)	284, 316
AloI	GAACNNNNNNTCC	2 cut(s)	942, 974
Alw21I	GWGCWC	2 cut(s)	125, 698
Alw26I	GTCTC	3 cut(s)	128, 634, 653
AoxI	GGCC	4 cut(s)	44, 306, 727, 1161
ApeKI	GCWGC	5 cut(s)	332, 776, 812, 827, 1038
ApoI	RAATTY	5 cut(s)	163, 755, 877, 1003, 1016
AseI	ATTAAT	1 cut(s)	897
AspLEI	GCGC	1 cut(s)	495
AspS9I	GGNCC	2 cut(s)	307, 1161
AsuHPI	GGTGA	1 cut(s)	1081
BaeGI	GKGCMC	1 cut(s)	1058
BanI	GGYRCC	3 cut(s)	28, 97, 1055
BauI	CACGAG	1 cut(s)	118
BbsI	GAAGAC	1 cut(s)	600
Bbv12I	GWGCWC	2 cut(s)	125, 698
BbvI	GCAGC	5 cut(s)	319, 763, 814, 824, 1050
BccI	CCATC	3 cut(s)	227, 583, 707
BciT130I	CCWGG	3 cut(s)	406, 1101, 1119
BciVI	GTATCC	1 cut(s)	1107
BclI	TGATCA	3 cut(s)	151, 225, 384
BcoDI	GTCTC	3 cut(s)	128, 634, 653
BfaI	CTAG	2 cut(s)	555, 831
BfmI	CTRYAG	4 cut(s)	777, 912, 962, 1146
BfuI	GTATCC	1 cut(s)	1107
BisI	GCNGC	6 cut(s)	333, 423, 777, 813, 828, 1039
BlpI	GCTNAGC	1 cut(s)	852
BlsI	GCNGC	6 cut(s)	334, 424, 778, 814, 829, 1040
Bme1390I	CCNGG	3 cut(s)	406, 1101, 1119
BmgT120I	GGNCC	2 cut(s)	307, 1161
BmiI	GGNNCC	3 cut(s)	30, 99, 1057
BmrFI	CCNGG	3 cut(s)	406, 1101, 1119
BmrI	ACTGGG	1 cut(s)	1135
BmsI	GCATC	8 cut(s)	66, 204, 241, 805, 814, 826, 982, 1075
BmuI	ACTGGG	1 cut(s)	1135
BpiI	GAAGAC	1 cut(s)	600
BplI	GAGNNNNNCTC	2 cut(s)	680, 712
Bpu1102I	GCTNAGC	1 cut(s)	852
BpuEI	CTTGAG	2 cut(s)	230, 677
BsaBI	GATNNNNATC	1 cut(s)	224
BsaI	GGTCTC	1 cut(s)	634
BsaJI	CCNNGG	5 cut(s)	41, 404, 405, 807, 1100
BsaWI	WCCGGW	1 cut(s)	112
Bsc4I	CCNNNNNNNGG	3 cut(s)	25, 745, 1066
Bse1I	ACTGG	1 cut(s)	1130
Bse3DI	GCAATG	3 cut(s)	201, 495, 840
Bse8I	GATNNNNATC	1 cut(s)	224
BseBI	CCWGG	3 cut(s)	406, 1101, 1119
BseDI	CCNNGG	5 cut(s)	41, 404, 405, 807, 1100
BseGI	GGATG	4 cut(s)	754, 829, 841, 1090
BseJI	GATNNNNATC	1 cut(s)	224
BseLI	CCNNNNNNNGG	3 cut(s)	25, 745, 1066
BseMI	GCAATG	3 cut(s)	201, 495, 840
BseMII	CTCAG	2 cut(s)	264, 843
BseNI	ACTGG	1 cut(s)	1130
BseRI	GAGGAG	3 cut(s)	800, 803, 806
BseSI	GKGCMC	1 cut(s)	1058
BseXI	GCAGC	5 cut(s)	319, 763, 814, 824, 1050
BshFI	GGCC	4 cut(s)	46, 308, 729, 1163
BshNI	GGYRCC	3 cut(s)	28, 97, 1055
BsiHKAI	GWGCWC	2 cut(s)	125, 698
BsiSI	CCGG	2 cut(s)	113, 1111
BslFI	GGGAC	1 cut(s)	387
BslI	CCNNNNNNNGG	3 cut(s)	25, 745, 1066
BsmAI	GTCTC	3 cut(s)	128, 634, 653
BsmFI	GGGAC	1 cut(s)	387
BsnI	GGCC	4 cut(s)	46, 308, 729, 1163
Bso31I	GGTCTC	1 cut(s)	634
Bsp1286I	GDGCHC	3 cut(s)	125, 698, 1058
Bsp143I	GATC	3 cut(s)	151, 225, 384
Bsp1720I	GCTNAGC	1 cut(s)	852
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	3 cut(s)	264, 422, 500
BspANI	GGCC	4 cut(s)	46, 308, 729, 1163
BspCNI	CTCAG	2 cut(s)	265, 844
BspLI	GGNNCC	3 cut(s)	30, 99, 1057
BspMAI	CTGCAG	2 cut(s)	781, 1150
BspT107I	GGYRCC	3 cut(s)	28, 97, 1055
BspTNI	GGTCTC	1 cut(s)	634
BsrDI	GCAATG	3 cut(s)	201, 495, 840
BsrI	ACTGG	1 cut(s)	1130
BssECI	CCNNGG	5 cut(s)	41, 404, 405, 807, 1100
BssMI	GATC	3 cut(s)	151, 225, 384
BssSI	CACGAG	1 cut(s)	118
BssT1I	CCWWGG	2 cut(s)	41, 807
Bst2BI	CACGAG	1 cut(s)	118
Bst2UI	CCWGG	3 cut(s)	406, 1101, 1119
Bst4CI	ACNGT	3 cut(s)	471, 664, 980
Bst6I	CTCTTC	2 cut(s)	624, 738
BstC8I	GCNNGC	1 cut(s)	613
BstDEI	CTNAG	2 cut(s)	273, 852
BstDSI	CCRYGG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	1064
BstF5I	GGATG	4 cut(s)	754, 829, 841, 1090
BstHHI	GCGC	1 cut(s)	495
BstKTI	GATC	3 cut(s)	154, 228, 387
BstMAI	GTCTC	3 cut(s)	128, 634, 653
BstMBI	GATC	3 cut(s)	151, 225, 384
BstMWI	GCNNNNNNNGC	6 cut(s)	154, 205, 214, 809, 836, 992
BstNI	CCWGG	3 cut(s)	406, 1101, 1119
BstSCI	CCNGG	3 cut(s)	404, 1099, 1117
BstSFI	CTRYAG	4 cut(s)	777, 912, 962, 1146
BstSLI	GKGCMC	1 cut(s)	1058
BstV1I	GCAGC	5 cut(s)	319, 763, 814, 824, 1050
BstV2I	GAAGAC	1 cut(s)	600
BstXI	CCANNNNNNTGG	2 cut(s)	42, 1125
BsuI	GTATCC	1 cut(s)	1107
BsuRI	GGCC	4 cut(s)	46, 308, 729, 1163
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	4 cut(s)	754, 829, 841, 1090
BtsI	GCAGTG	1 cut(s)	913
BtsIMutI	CAGTG	5 cut(s)	330, 476, 913, 985, 1123
Cac8I	GCNNGC	1 cut(s)	613
CfoI	GCGC	1 cut(s)	495
Cfr13I	GGNCC	2 cut(s)	307, 1161
Csp6I	GTAC	1 cut(s)	770
CviAII	CATG	5 cut(s)	42, 598, 820, 1034, 1080
CviQI	GTAC	1 cut(s)	770
DdeI	CTNAG	2 cut(s)	273, 852
DpnI	GATC	3 cut(s)	153, 227, 386
DpnII	GATC	3 cut(s)	151, 225, 384
DraIII	CACNNNGTG	1 cut(s)	1129
Eam1104I	CTCTTC	2 cut(s)	624, 738
EarI	CTCTTC	2 cut(s)	624, 738
Eco130I	CCWWGG	2 cut(s)	41, 807
Eco31I	GGTCTC	1 cut(s)	634
Eco32I	GATATC	1 cut(s)	1156
Eco57I	CTGAAG	1 cut(s)	179
EcoNI	CCTNNNNNAGG	1 cut(s)	1064
EcoRII	CCWGG	3 cut(s)	404, 1099, 1117
EcoRV	GATATC	1 cut(s)	1156
EcoT14I	CCWWGG	2 cut(s)	41, 807
ErhI	CCWWGG	2 cut(s)	41, 807
FaeI	CATG	5 cut(s)	45, 601, 823, 1037, 1083
FaqI	GGGAC	1 cut(s)	387
FatI	CATG	5 cut(s)	41, 597, 819, 1033, 1079
FauI	CCCGC	1 cut(s)	257
FbaI	TGATCA	3 cut(s)	151, 225, 384
Fnu4HI	GCNGC	6 cut(s)	333, 423, 777, 813, 828, 1039
FokI	GGATG	4 cut(s)	761, 836, 848, 1097
Fsp4HI	GCNGC	6 cut(s)	333, 423, 777, 813, 828, 1039
FspBI	CTAG	2 cut(s)	555, 831
GlaI	GCGC	1 cut(s)	494
GluI	GCNGC	6 cut(s)	333, 423, 777, 813, 828, 1039
HaeIII	GGCC	4 cut(s)	46, 308, 729, 1163
HapII	CCGG	2 cut(s)	113, 1111
HhaI	GCGC	1 cut(s)	495
Hin1II	CATG	5 cut(s)	45, 601, 823, 1037, 1083
Hin6I	GCGC	1 cut(s)	493
HinP1I	GCGC	1 cut(s)	493
HinfI	GANTC	4 cut(s)	4, 647, 890, 944
HpaII	CCGG	2 cut(s)	113, 1111
HphI	GGTGA	1 cut(s)	1081
Hpy188I	TCNGA	5 cut(s)	230, 247, 274, 652, 884
Hpy188III	TCNNGA	4 cut(s)	118, 703, 761, 948
HpyAV	CCTTC	2 cut(s)	518, 1181
HpyCH4III	ACNGT	3 cut(s)	471, 664, 980
HpyCH4IV	ACGT	1 cut(s)	520
HpyF10VI	GCNNNNNNNGC	6 cut(s)	154, 205, 214, 809, 836, 992
HpyF3I	CTNAG	2 cut(s)	273, 852
HpySE526I	ACGT	1 cut(s)	520
Hsp92II	CATG	5 cut(s)	45, 601, 823, 1037, 1083
HspAI	GCGC	1 cut(s)	493
Ksp22I	TGATCA	3 cut(s)	151, 225, 384
Kzo9I	GATC	3 cut(s)	151, 225, 384
LmnI	GCTCC	4 cut(s)	94, 701, 793, 983
Lsp1109I	GCAGC	5 cut(s)	319, 763, 814, 824, 1050
LweI	GCATC	8 cut(s)	66, 204, 241, 805, 814, 826, 982, 1075
MaeI	CTAG	2 cut(s)	555, 831
MaeII	ACGT	1 cut(s)	520
MaeIII	GTNAC	2 cut(s)	115, 974
MalI	GATC	3 cut(s)	153, 227, 386
MboI	GATC	3 cut(s)	151, 225, 384
MboII	GAAGA	8 cut(s)	172, 304, 605, 613, 641, 730, 755, 1086
MhlI	GDGCHC	3 cut(s)	125, 698, 1058
MluCI	AATT	9 cut(s)	163, 431, 561, 606, 680, 755, 877, 1003, 1016
MlyI	GAGTC	1 cut(s)	884
MseI	TTAA	3 cut(s)	344, 618, 897
MslI	CAYNNNNRTG	1 cut(s)	40
MspA1I	CMGCKG	3 cut(s)	157, 264, 815
MspI	CCGG	2 cut(s)	113, 1111
MspR9I	CCNGG	3 cut(s)	406, 1101, 1119
MvaI	CCWGG	3 cut(s)	406, 1101, 1119
MwoI	GCNNNNNNNGC	6 cut(s)	154, 205, 214, 809, 836, 992
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	3 cut(s)	151, 225, 384
NlaIII	CATG	5 cut(s)	45, 601, 823, 1037, 1083
NlaIV	GGNNCC	3 cut(s)	30, 99, 1057
NmuCI	GTSAC	1 cut(s)	115
PasI	CCCWGGG	1 cut(s)	405
PfeI	GAWTC	3 cut(s)	4, 647, 944
PflMI	CCANNNNNTGG	1 cut(s)	25
PkrI	GCNGC	6 cut(s)	334, 424, 778, 814, 829, 1040
PleI	GAGTC	1 cut(s)	884
PpsI	GAGTC	1 cut(s)	884
PshBI	ATTAAT	1 cut(s)	897
Psp6I	CCWGG	3 cut(s)	404, 1099, 1117
PspGI	CCWGG	3 cut(s)	404, 1099, 1117
PspN4I	GGNNCC	3 cut(s)	30, 99, 1057
PspPI	GGNCC	2 cut(s)	307, 1161
PstI	CTGCAG	2 cut(s)	781, 1150
PvuII	CAGCTG	2 cut(s)	157, 815
RsaI	GTAC	1 cut(s)	771
RsaNI	GTAC	1 cut(s)	770
RseI	CAYNNNNRTG	1 cut(s)	40
SaqAI	TTAA	3 cut(s)	344, 618, 897
SatI	GCNGC	6 cut(s)	333, 423, 777, 813, 828, 1039
Sau3AI	GATC	3 cut(s)	151, 225, 384
Sau96I	GGNCC	2 cut(s)	307, 1161
SchI	GAGTC	1 cut(s)	884
ScrFI	CCNGG	3 cut(s)	406, 1101, 1119
SduI	GDGCHC	3 cut(s)	125, 698, 1058
SfaNI	GCATC	8 cut(s)	66, 204, 241, 805, 814, 826, 982, 1075
SfcI	CTRYAG	4 cut(s)	777, 912, 962, 1146
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	209, 656
SmoI	CTYRAG	2 cut(s)	209, 656
Sse9I	AATT	9 cut(s)	163, 431, 561, 606, 680, 755, 877, 1003, 1016
SsiI	CCGC	3 cut(s)	264, 422, 500
SspMI	CTAG	2 cut(s)	555, 831
StyD4I	CCNGG	3 cut(s)	404, 1099, 1117
StyI	CCWWGG	2 cut(s)	41, 807
TaaI	ACNGT	3 cut(s)	471, 664, 980
TaiI	ACGT	1 cut(s)	523
TaqI	TCGA	3 cut(s)	49, 860, 901
TasI	AATT	9 cut(s)	163, 431, 561, 606, 680, 755, 877, 1003, 1016
TauI	GCSGC	1 cut(s)	425
TfiI	GAWTC	3 cut(s)	4, 647, 944
Tru1I	TTAA	3 cut(s)	344, 618, 897
Tru9I	TTAA	3 cut(s)	344, 618, 897
TscAI	CASTG	5 cut(s)	330, 476, 913, 985, 1130
TseFI	GTSAC	1 cut(s)	115
TseI	GCWGC	5 cut(s)	332, 776, 812, 827, 1038
Tsp45I	GTSAC	1 cut(s)	115
TspDTI	ATGAA	5 cut(s)	17, 549, 558, 614, 731
TspRI	CASTG	5 cut(s)	330, 476, 913, 985, 1130
Van91I	CCANNNNNTGG	1 cut(s)	25
VspI	ATTAAT	1 cut(s)	897
XagI	CCTNNNNNAGG	1 cut(s)	1064
XapI	RAATTY	5 cut(s)	163, 755, 877, 1003, 1016
XcmI	CCANNNNNNNNNTGG	2 cut(s)	91, 586
XspI	CTAG	2 cut(s)	555, 831

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.