Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

50204377 .. 50207727

Gene Structure 3351 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ58328

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGTGTCCCTGGGAGGAAAAATCTGTGGCTGTCCAATTATCCAATAAGATATGCAAGTCCAAGAGGAATAAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTAATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGTAAAGGAAGAGAGAAAGAGACAAGAATCCAAGAAAAGTTTTGACCCTAGTGATGGCTTTTACTCTATTGAGAAATTGCAAGAGTTGCGCTCCATCAGGATTGAAAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACAAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACAACCGAGAATTTCAGACCTGACTCTATTAATCAAAGCAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCCCGACAATTCCAAGCACTAATGAGGGCAACTCTACTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTACAGTGGAGCTTGTGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTATTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTAAATTTATATGGAATACTTCCAAAACATGGGATGCCTATAAGACCAGAAGGAAGTCGGATACCAGGACACTGGGTGCAACCTCCACCTCCTACAGATGATATCTGGGCCTCCTACCTTCTGCAACCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

293

Amino Acids

33.49

Weight (kDa)

8.73

Isoelectric Point (pI)

65.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	7 - 133	1.5e-06	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	734
AccB7I	CCANNNNNTGG	1 cut(s)	776
AciI	CCGC	1 cut(s)	104
AcsI	RAATTY	5 cut(s)	386, 508, 682, 695, 751
AdeI	CACNNNGTG	1 cut(s)	823
AfaI	GTAC	1 cut(s)	402
AfiI	CCNNNNNNNGG	4 cut(s)	290, 376, 745, 776
AgsI	TTSAA	2 cut(s)	341, 395
AjnI	CCWGG	2 cut(s)	8, 811
AloI	GAACNNNNNNTCC	2 cut(s)	621, 653
AluBI	AGCT	6 cut(s)	143, 155, 170, 407, 446, 665
AluI	AGCT	6 cut(s)	143, 155, 170, 407, 446, 665
Alw26I	GTCTC	1 cut(s)	250
AoxI	GGCC	3 cut(s)	358, 568, 855
ApeKI	GCWGC	4 cut(s)	407, 443, 458, 717
ApoI	RAATTY	5 cut(s)	386, 508, 682, 695, 751
AseI	ATTAAT	1 cut(s)	528
AspLEI	GCGC	2 cut(s)	99, 327
AspS9I	GGNCC	2 cut(s)	569, 855
BaeGI	GKGCMC	1 cut(s)	737
BanI	GGYRCC	1 cut(s)	734
BbsI	GAAGAC	1 cut(s)	216
BbvI	GCAGC	4 cut(s)	394, 445, 455, 729
BccI	CCATC	3 cut(s)	199, 284, 338
BciT130I	CCWGG	2 cut(s)	10, 813
BciVI	GTATCC	1 cut(s)	801
BcoDI	GTCTC	1 cut(s)	250
BfaI	CTAG	3 cut(s)	171, 285, 462
BfmI	CTRYAG	4 cut(s)	408, 606, 641, 840
BfuI	GTATCC	1 cut(s)	801
BisI	GCNGC	4 cut(s)	408, 444, 459, 718
BlpI	GCTNAGC	1 cut(s)	483
BlsI	GCNGC	4 cut(s)	409, 445, 460, 719
Bme1390I	CCNGG	2 cut(s)	10, 813
BmgT120I	GGNCC	2 cut(s)	569, 855
BmiI	GGNNCC	1 cut(s)	736
BmrFI	CCNGG	2 cut(s)	10, 813
BmrI	ACTGGG	1 cut(s)	829
BmsI	GCATC	5 cut(s)	436, 445, 457, 661, 771
BmuI	ACTGGG	1 cut(s)	829
BpiI	GAAGAC	1 cut(s)	216
BplI	GAGNNNNNCTC	4 cut(s)	311, 343, 584, 616
Bpu1102I	GCTNAGC	1 cut(s)	483
BsaJI	CCNNGG	2 cut(s)	8, 9
Bsc4I	CCNNNNNNNGG	4 cut(s)	290, 376, 745, 776
Bse1I	ACTGG	1 cut(s)	824
Bse3DI	GCAATG	2 cut(s)	99, 471
BseBI	CCWGG	2 cut(s)	10, 813
BseDI	CCNNGG	2 cut(s)	8, 9
BseGI	GGATG	4 cut(s)	385, 460, 472, 786
BseLI	CCNNNNNNNGG	4 cut(s)	290, 376, 745, 776
BseMI	GCAATG	2 cut(s)	99, 471
BseMII	CTCAG	1 cut(s)	474
BseNI	ACTGG	1 cut(s)	824
BseRI	GAGGAG	3 cut(s)	431, 434, 437
BseSI	GKGCMC	1 cut(s)	737
BseXI	GCAGC	4 cut(s)	394, 445, 455, 729
BshFI	GGCC	3 cut(s)	360, 570, 857
BshNI	GGYRCC	1 cut(s)	734
BslI	CCNNNNNNNGG	4 cut(s)	290, 376, 745, 776
BsmAI	GTCTC	1 cut(s)	250
BsnI	GGCC	3 cut(s)	360, 570, 857
Bsp1286I	GDGCHC	1 cut(s)	737
Bsp1720I	GCTNAGC	1 cut(s)	483
BspACI	CCGC	1 cut(s)	104
BspANI	GGCC	3 cut(s)	360, 570, 857
BspCNI	CTCAG	1 cut(s)	475
BspLI	GGNNCC	1 cut(s)	736
BspMAI	CTGCAG	2 cut(s)	412, 610
BspT107I	GGYRCC	1 cut(s)	734
BsrDI	GCAATG	2 cut(s)	99, 471
BsrI	ACTGG	1 cut(s)	824
BssECI	CCNNGG	2 cut(s)	8, 9
Bst2UI	CCWGG	2 cut(s)	10, 813
Bst4CI	ACNGT	2 cut(s)	75, 659
Bst6I	CTCTTC	2 cut(s)	240, 369
BstAPI	GCANNNNNTGC	1 cut(s)	322
BstC8I	GCNNGC	1 cut(s)	229
BstDEI	CTNAG	1 cut(s)	483
BstENI	CCTNNNNNAGG	1 cut(s)	743
BstF5I	GGATG	4 cut(s)	385, 460, 472, 786
BstHHI	GCGC	2 cut(s)	99, 327
BstMAI	GTCTC	1 cut(s)	250
BstMWI	GCNNNNNNNGC	4 cut(s)	322, 440, 467, 671
BstNI	CCWGG	2 cut(s)	10, 813
BstSCI	CCNGG	2 cut(s)	8, 811
BstSFI	CTRYAG	4 cut(s)	408, 606, 641, 840
BstSLI	GKGCMC	1 cut(s)	737
BstV1I	GCAGC	4 cut(s)	394, 445, 455, 729
BstV2I	GAAGAC	1 cut(s)	216
BstXI	CCANNNNNNTGG	1 cut(s)	819
BsuI	GTATCC	1 cut(s)	801
BsuRI	GGCC	3 cut(s)	360, 570, 857
BtsCI	GGATG	4 cut(s)	385, 460, 472, 786
BtsI	GCAGTG	1 cut(s)	544
BtsIMutI	CAGTG	3 cut(s)	544, 664, 817
Cac8I	GCNNGC	1 cut(s)	229
CfoI	GCGC	2 cut(s)	99, 327
Cfr13I	GGNCC	2 cut(s)	569, 855
Csp6I	GTAC	1 cut(s)	401
CviAII	CATG	4 cut(s)	214, 451, 713, 776
CviQI	GTAC	1 cut(s)	401
DdeI	CTNAG	1 cut(s)	483
DraIII	CACNNNGTG	1 cut(s)	823
Eam1104I	CTCTTC	2 cut(s)	240, 369
EarI	CTCTTC	2 cut(s)	240, 369
Eco32I	GATATC	1 cut(s)	850
EcoNI	CCTNNNNNAGG	1 cut(s)	743
EcoRII	CCWGG	2 cut(s)	8, 811
EcoRV	GATATC	1 cut(s)	850
FaeI	CATG	4 cut(s)	217, 454, 716, 779
FatI	CATG	4 cut(s)	213, 450, 712, 775
Fnu4HI	GCNGC	4 cut(s)	408, 444, 459, 718
FokI	GGATG	4 cut(s)	392, 467, 479, 793
Fsp4HI	GCNGC	4 cut(s)	408, 444, 459, 718
FspBI	CTAG	3 cut(s)	171, 285, 462
GlaI	GCGC	2 cut(s)	98, 326
GluI	GCNGC	4 cut(s)	408, 444, 459, 718
HaeIII	GGCC	3 cut(s)	360, 570, 857
HhaI	GCGC	2 cut(s)	99, 327
Hin1II	CATG	4 cut(s)	217, 454, 716, 779
Hin6I	GCGC	2 cut(s)	97, 325
HinP1I	GCGC	2 cut(s)	97, 325
HinfI	GANTC	3 cut(s)	263, 521, 623
Hpy188I	TCNGA	2 cut(s)	515, 807
Hpy188III	TCNNGA	4 cut(s)	149, 334, 392, 627
HpyAV	CCTTC	3 cut(s)	122, 791, 875
HpyCH4III	ACNGT	2 cut(s)	75, 659
HpyCH4IV	ACGT	1 cut(s)	124
HpyF10VI	GCNNNNNNNGC	4 cut(s)	322, 440, 467, 671
HpyF3I	CTNAG	1 cut(s)	483
HpySE526I	ACGT	1 cut(s)	124
Hsp92II	CATG	4 cut(s)	217, 454, 716, 779
HspAI	GCGC	2 cut(s)	97, 325
LmnI	GCTCC	3 cut(s)	332, 424, 662
Lsp1109I	GCAGC	4 cut(s)	394, 445, 455, 729
LweI	GCATC	5 cut(s)	436, 445, 457, 661, 771
MaeI	CTAG	3 cut(s)	171, 285, 462
MaeII	ACGT	1 cut(s)	124
MaeIII	GTNAC	2 cut(s)	610, 653
MboII	GAAGA	5 cut(s)	221, 229, 257, 361, 386
MhlI	GDGCHC	1 cut(s)	737
MlyI	GAGTC	1 cut(s)	515
MmeI	TCCRAC	1 cut(s)	785
MseI	TTAA	2 cut(s)	234, 528
MspA1I	CMGCKG	1 cut(s)	446
MspR9I	CCNGG	2 cut(s)	10, 813
MvaI	CCWGG	2 cut(s)	10, 813
MwoI	GCNNNNNNNGC	4 cut(s)	322, 440, 467, 671
NlaIII	CATG	4 cut(s)	217, 454, 716, 779
NlaIV	GGNNCC	1 cut(s)	736
NmuCI	GTSAC	1 cut(s)	610
PasI	CCCWGGG	1 cut(s)	9
PfeI	GAWTC	2 cut(s)	263, 623
PflMI	CCANNNNNTGG	1 cut(s)	776
PkrI	GCNGC	4 cut(s)	409, 445, 460, 719
PleI	GAGTC	1 cut(s)	515
PpsI	GAGTC	1 cut(s)	515
PshBI	ATTAAT	1 cut(s)	528
Psp6I	CCWGG	2 cut(s)	8, 811
PspGI	CCWGG	2 cut(s)	8, 811
PspN4I	GGNNCC	1 cut(s)	736
PspPI	GGNCC	2 cut(s)	569, 855
PstI	CTGCAG	2 cut(s)	412, 610
PvuII	CAGCTG	1 cut(s)	446
RsaI	GTAC	1 cut(s)	402
RsaNI	GTAC	1 cut(s)	401
SaqAI	TTAA	2 cut(s)	234, 528
SatI	GCNGC	4 cut(s)	408, 444, 459, 718
Sau96I	GGNCC	2 cut(s)	569, 855
SchI	GAGTC	1 cut(s)	515
ScrFI	CCNGG	2 cut(s)	10, 813
SduI	GDGCHC	1 cut(s)	737
SfaNI	GCATC	5 cut(s)	436, 445, 457, 661, 771
SfcI	CTRYAG	4 cut(s)	408, 606, 641, 840
SsiI	CCGC	1 cut(s)	104
SspMI	CTAG	3 cut(s)	171, 285, 462
StyD4I	CCNGG	2 cut(s)	8, 811
TaaI	ACNGT	2 cut(s)	75, 659
TaiI	ACGT	1 cut(s)	127
TaqI	TCGA	2 cut(s)	148, 491
TatI	WGTACW	1 cut(s)	400
TfiI	GAWTC	2 cut(s)	263, 623
Tru1I	TTAA	2 cut(s)	234, 528
Tru9I	TTAA	2 cut(s)	234, 528
TscAI	CASTG	3 cut(s)	544, 664, 824
TseFI	GTSAC	1 cut(s)	610
TseI	GCWGC	4 cut(s)	407, 443, 458, 717
Tsp45I	GTSAC	1 cut(s)	610
TspDTI	ATGAA	4 cut(s)	153, 174, 230, 362
TspRI	CASTG	3 cut(s)	544, 664, 824
Van91I	CCANNNNNTGG	1 cut(s)	776
VspI	ATTAAT	1 cut(s)	528
XagI	CCTNNNNNAGG	1 cut(s)	743
XapI	RAATTY	5 cut(s)	386, 508, 682, 695, 751
XcmI	CCANNNNNNNNNTGG	1 cut(s)	202
XspI	CTAG	3 cut(s)	171, 285, 462

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.