Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Forward (+)

36881628 .. 36882102

Gene Structure 475 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0259400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 369 bp

ATGGCACGAGTCAGTACTGCTCTGGTGTTGATTGCCTTCTTCGTCGTTTTTCCGAGCATGGTTTTGGCCACACAATATCTTGTTGGAGATGATTTAGGCTGGAATGGTGATGCTGATTACGAGGGTTGGGTTGCTGACAAAACTTTCTTTGTTGGAGATGTTTTAGTTTTCAATTACGTTGCAACTGGCCACAACGTTGTTATAGCTACTAATGGTGACAATTATGACAATTGTGTTGCATCTCCAAACTTTGGTGTGTACGACAGTGGGAATGATGCAATAACATTGAATGAAGCTGGAACTTACTACTTCTTATGTTCATATCATTGCGACTATCTGCAACAGAAAGTTATGGTCACTGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

122

Amino Acids

13.41

Weight (kDa)

4.05

Isoelectric Point (pI)

21.08

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cu_bind_like	PF02298	35 - 109	1.7e-18	Plastocyanin-like domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	251
AclI	AACGTT	1 cut(s)	195
AcoI	YGGCCR	2 cut(s)	66, 187
AfaI	GTAC	2 cut(s)	16, 260
AfiI	CCNNNNNNNGG	1 cut(s)	251
AgsI	TTSAA	2 cut(s)	172, 289
AluBI	AGCT	2 cut(s)	206, 296
AluI	AGCT	2 cut(s)	206, 296
AoxI	GGCC	2 cut(s)	66, 187
AsuHPI	GGTGA	2 cut(s)	119, 227
BalI	TGGCCA	2 cut(s)	68, 189
BauI	CACGAG	1 cut(s)	6
BfaI	CTAG	1 cut(s)	367
BmcAI	AGTACT	1 cut(s)	16
BmsI	GCATC	3 cut(s)	100, 248, 265
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	1 cut(s)	190
Bse3DI	GCAATG	1 cut(s)	325
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	325
BseNI	ACTGG	1 cut(s)	190
BshFI	GGCC	2 cut(s)	68, 189
BslI	CCNNNNNNNGG	1 cut(s)	251
BsnI	GGCC	2 cut(s)	68, 189
BspANI	GGCC	2 cut(s)	68, 189
BsrDI	GCAATG	1 cut(s)	325
BsrI	ACTGG	1 cut(s)	190
BssSI	CACGAG	1 cut(s)	6
Bst2BI	CACGAG	1 cut(s)	6
Bst4CI	ACNGT	2 cut(s)	266, 361
BsuRI	GGCC	2 cut(s)	68, 189
BtsIMutI	CAGTG	2 cut(s)	271, 357
Csp6I	GTAC	2 cut(s)	15, 259
CviAII	CATG	1 cut(s)	58
CviJI	RGCY	5 cut(s)	68, 99, 189, 206, 296
CviKI_1	RGCY	5 cut(s)	68, 99, 189, 206, 296
CviQI	GTAC	2 cut(s)	15, 259
EaeI	YGGCCR	2 cut(s)	66, 187
FaeI	CATG	1 cut(s)	61
FaiI	YATR	6 cut(s)	59, 203, 225, 316, 322, 353
FatI	CATG	1 cut(s)	57
FspBI	CTAG	1 cut(s)	367
HaeIII	GGCC	2 cut(s)	68, 189
Hin1II	CATG	1 cut(s)	61
HinfI	GANTC	1 cut(s)	9
HphI	GGTGA	2 cut(s)	119, 227
Hpy166II	GTNNAC	2 cut(s)	259, 364
Hpy188I	TCNGA	1 cut(s)	54
Hpy8I	GTNNAC	2 cut(s)	259, 364
Hpy99I	CGWCG	1 cut(s)	47
HpyAV	CCTTC	1 cut(s)	46
HpyCH4III	ACNGT	2 cut(s)	266, 361
HpyCH4IV	ACGT	2 cut(s)	177, 195
HpyCH4V	TGCA	4 cut(s)	182, 239, 278, 340
HpySE526I	ACGT	2 cut(s)	177, 195
Hsp92II	CATG	1 cut(s)	61
LpnPI	CCDG	4 cut(s)	8, 85, 171, 282
LweI	GCATC	3 cut(s)	100, 248, 265
MaeI	CTAG	1 cut(s)	367
MaeII	ACGT	2 cut(s)	177, 195
MaeIII	GTNAC	2 cut(s)	215, 355
MboII	GAAGA	1 cut(s)	31
MfeI	CAATTG	1 cut(s)	229
MlsI	TGGCCA	2 cut(s)	68, 189
MluCI	AATT	3 cut(s)	172, 220, 229
MluNI	TGGCCA	2 cut(s)	68, 189
MlyI	GAGTC	1 cut(s)	18
MmeI	TCCRAC	2 cut(s)	64, 133
MnlI	CCTC	1 cut(s)	115
Mox20I	TGGCCA	2 cut(s)	68, 189
MscI	TGGCCA	2 cut(s)	68, 189
Msp20I	TGGCCA	2 cut(s)	68, 189
MunI	CAATTG	1 cut(s)	229
NlaIII	CATG	1 cut(s)	61
NmuCI	GTSAC	2 cut(s)	215, 355
PflMI	CCANNNNNTGG	1 cut(s)	251
PleI	GAGTC	1 cut(s)	17
PpsI	GAGTC	1 cut(s)	17
Psp1406I	AACGTT	1 cut(s)	195
RsaI	GTAC	2 cut(s)	16, 260
RsaNI	GTAC	2 cut(s)	15, 259
ScaI	AGTACT	1 cut(s)	16
SchI	GAGTC	1 cut(s)	18
SetI	ASST	4 cut(s)	180, 198, 208, 298
SfaNI	GCATC	3 cut(s)	100, 248, 265
Sse9I	AATT	3 cut(s)	172, 220, 229
SspMI	CTAG	1 cut(s)	367
TaaI	ACNGT	2 cut(s)	266, 361
TaiI	ACGT	2 cut(s)	180, 198
TasI	AATT	3 cut(s)	172, 220, 229
TatI	WGTACW	1 cut(s)	14
TscAI	CASTG	2 cut(s)	271, 364
TseFI	GTSAC	2 cut(s)	215, 355
Tsp45I	GTSAC	2 cut(s)	215, 355
TspDTI	ATGAA	2 cut(s)	306, 309
TspRI	CASTG	2 cut(s)	271, 364
Van91I	CCANNNNNTGG	1 cut(s)	251
XspI	CTAG	1 cut(s)	367
ZrmI	AGTACT	1 cut(s)	16

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.