Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Forward (+)

17541873 .. 17544700

Gene Structure 2828 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027987

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1353 bp

ATGCAAGAGATATCCCCGGTCTTCATGTCGCAAGGCAAAGAGTTAAAGGTGGTGGTTGGTTCCTATACCATGTCAAATGTAATGAAAAGAGATCCTGCAGCTCAGTTCCTCATTGTAATCAGAAGCAAGGATACCATTGGTTTGCGATCTTTTGCTGCTGGTGGAAAGTTATTGCAGATAAATAGAAGAATGGAATTTGTATTCGCAACTCACAGTTTGGTAGCCATGAATCCAAATCCATACCAACCTATGGCACCTCCGCCTCCATGGCCTCGAATGTTGCCGCCTAACCCTCCAATGATGCCTCCCAACGCTCCTATGGTGCCCCCCAACCCTCCGGTCACGAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATCAGAGATGGTAAGGGGTCTGATGATGCCTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAAATAGGAAGATTGATTTGGAGGCCCAAGTGTTGCAATCACTGTCCAATTATCCAATAAGATATGCAAGTCCAAGAGGAATAAAACGGTGGAGGAAAAGAAAGCGGAAGTGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGTAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACAGTATTGATTGTTGAGAAATTGCAAGAGTTGCGCTCCATCAGGATTGAAAAAATGAACAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACAAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGTTGACATGGATGCTGCTAGGGATGCCATTGCAACTACCGAGAATTTCAGACCTGACTCTATTAATCAAAGCAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCTTGACAATTCCAAGCACTAATGAAGGCAACTCTACTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCCACAGGGAGAGGGTTACAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTATTATCATGGCAGCAATACTGATATGGGCACCCTTATTGAGGTGAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCGGATACCGGGACACTGGGTGCAACCTACACCTCCTGCAGATGCTATCTGGGCCTCCTACCTTCTGCAACCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

451

Amino Acids

50.88

Weight (kDa)

8.32

Isoelectric Point (pI)

52.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	392 - 446	1.2e-09	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	253, 322, 1220
AccB7I	CCANNNNNTGG	1 cut(s)	250
AciI	CCGC	6 cut(s)	260, 284, 363, 489, 613, 626
AclWI	GGATC	1 cut(s)	86
AcsI	RAATTY	6 cut(s)	194, 388, 893, 994, 1168, 1181
AcuI	CTGAAG	1 cut(s)	404
AdeI	CACNNNGTG	1 cut(s)	1294
AfaI	GTAC	1 cut(s)	909
AfiI	CCNNNNNNNGG	4 cut(s)	250, 883, 1231, 1282
AgsI	TTSAA	3 cut(s)	508, 848, 902
AjnI	CCWGG	1 cut(s)	1264
AjuI	GAANNNNNNNTTGG	2 cut(s)	509, 541
AloI	GAACNNNNNNTCC	2 cut(s)	1107, 1139
AluBI	AGCT	9 cut(s)	101, 382, 433, 665, 677, 692, 793, 914, 1151
AluI	AGCT	9 cut(s)	101, 382, 433, 665, 677, 692, 793, 914, 1151
Alw21I	GWGCWC	1 cut(s)	350
Alw26I	GTCTC	3 cut(s)	353, 772, 791
AlwI	GGATC	1 cut(s)	86
AoxI	GGCC	4 cut(s)	269, 531, 865, 1326
ApeKI	GCWGC	5 cut(s)	98, 155, 914, 965, 1203
ApoI	RAATTY	6 cut(s)	194, 388, 893, 994, 1168, 1181
AseI	ATTAAT	1 cut(s)	1014
AspLEI	GCGC	1 cut(s)	834
AspS9I	GGNCC	2 cut(s)	532, 1326
AsuC2I	CCSGG	2 cut(s)	17, 1284
AsuHPI	GGTGA	1 cut(s)	1246
BaeGI	GKGCMC	2 cut(s)	327, 1223
BanI	GGYRCC	3 cut(s)	253, 322, 1220
BarI	GAAGNNNNNNTAC	2 cut(s)	115, 147
BauI	CACGAG	1 cut(s)	343
BbsI	GAAGAC	2 cut(s)	13, 738
Bbv12I	GWGCWC	1 cut(s)	350
BbvI	GCAGC	5 cut(s)	110, 142, 901, 952, 1215
BccI	CCATC	3 cut(s)	452, 721, 845
BciT130I	CCWGG	1 cut(s)	1266
BciVI	GTATCC	2 cut(s)	124, 1272
BclI	TGATCA	2 cut(s)	376, 450
BcnI	CCSGG	2 cut(s)	17, 1284
BcoDI	GTCTC	3 cut(s)	353, 772, 791
BfaI	CTAG	3 cut(s)	693, 782, 969
BfmI	CTRYAG	4 cut(s)	96, 915, 1092, 1311
BfuI	GTATCC	2 cut(s)	124, 1272
BglI	GCCNNNNNGGC	1 cut(s)	268
BisI	GCNGC	6 cut(s)	99, 156, 284, 915, 966, 1204
BlsI	GCNGC	6 cut(s)	100, 157, 285, 916, 967, 1205
Bme1390I	CCNGG	3 cut(s)	17, 1266, 1284
BmgT120I	GGNCC	2 cut(s)	532, 1326
BmiI	GGNNCC	4 cut(s)	61, 255, 324, 1222
BmrFI	CCNGG	3 cut(s)	17, 1266, 1284
BmrI	ACTGGG	1 cut(s)	1300
BmsI	GCATC	9 cut(s)	291, 429, 466, 943, 952, 964, 1147, 1240, 1306
BmuI	ACTGGG	1 cut(s)	1300
BpiI	GAAGAC	2 cut(s)	13, 738
BplI	GAGNNNNNCTC	2 cut(s)	818, 850
BpuEI	CTTGAG	2 cut(s)	455, 815
BpuMI	CCSGG	2 cut(s)	17, 1284
BsaBI	GATNNNNATC	1 cut(s)	449
BsaI	GGTCTC	1 cut(s)	353
BsaJI	CCNNGG	2 cut(s)	15, 266
BsaWI	WCCGGW	1 cut(s)	337
Bsc4I	CCNNNNNNNGG	4 cut(s)	250, 883, 1231, 1282
Bse1I	ACTGG	1 cut(s)	1295
Bse3DI	GCAATG	3 cut(s)	426, 621, 978
Bse8I	GATNNNNATC	1 cut(s)	449
BseBI	CCWGG	1 cut(s)	1266
BseDI	CCNNGG	2 cut(s)	15, 266
BseGI	GGATG	4 cut(s)	892, 967, 979, 1255
BseJI	GATNNNNATC	1 cut(s)	449
BseLI	CCNNNNNNNGG	4 cut(s)	250, 883, 1231, 1282
BseMI	GCAATG	3 cut(s)	426, 621, 978
BseMII	CTCAG	2 cut(s)	116, 489
BseNI	ACTGG	1 cut(s)	1295
BseRI	GAGGAG	3 cut(s)	938, 941, 944
BseSI	GKGCMC	2 cut(s)	327, 1223
BseXI	GCAGC	5 cut(s)	110, 142, 901, 952, 1215
BshFI	GGCC	4 cut(s)	271, 533, 867, 1328
BshNI	GGYRCC	3 cut(s)	253, 322, 1220
BsiHKAI	GWGCWC	1 cut(s)	350
BsiSI	CCGG	4 cut(s)	17, 338, 1276, 1283
BslFI	GGGAC	1 cut(s)	1299
BslI	CCNNNNNNNGG	4 cut(s)	250, 883, 1231, 1282
BsmAI	GTCTC	3 cut(s)	353, 772, 791
BsmFI	GGGAC	1 cut(s)	1299
BsnI	GGCC	4 cut(s)	271, 533, 867, 1328
Bso31I	GGTCTC	1 cut(s)	353
Bsp1286I	GDGCHC	3 cut(s)	327, 350, 1223
Bsp143I	GATC	5 cut(s)	91, 146, 376, 450, 667
Bsp19I	CCATGG	1 cut(s)	266
BspACI	CCGC	6 cut(s)	260, 284, 363, 489, 613, 626
BspANI	GGCC	4 cut(s)	271, 533, 867, 1328
BspCNI	CTCAG	2 cut(s)	115, 490
BspLI	GGNNCC	4 cut(s)	61, 255, 324, 1222
BspMAI	CTGCAG	4 cut(s)	100, 919, 1096, 1315
BspPI	GGATC	1 cut(s)	86
BspT107I	GGYRCC	3 cut(s)	253, 322, 1220
BspTNI	GGTCTC	1 cut(s)	353
BsrDI	GCAATG	3 cut(s)	426, 621, 978
BsrI	ACTGG	1 cut(s)	1295
BssECI	CCNNGG	2 cut(s)	15, 266
BssMI	GATC	5 cut(s)	91, 146, 376, 450, 667
BssSI	CACGAG	1 cut(s)	343
BssT1I	CCWWGG	1 cut(s)	266
Bst2BI	CACGAG	1 cut(s)	343
Bst2UI	CCWGG	1 cut(s)	1266
Bst4CI	ACNGT	5 cut(s)	215, 552, 597, 802, 1145
Bst6I	CTCTTC	2 cut(s)	762, 876
BstAPI	GCANNNNNTGC	1 cut(s)	829
BstC8I	GCNNGC	1 cut(s)	751
BstDEI	CTNAG	2 cut(s)	102, 498
BstDSI	CCRYGG	1 cut(s)	266
BstENI	CCTNNNNNAGG	1 cut(s)	1229
BstF5I	GGATG	4 cut(s)	892, 967, 979, 1255
BstHHI	GCGC	1 cut(s)	834
BstKTI	GATC	5 cut(s)	94, 149, 379, 453, 670
BstMAI	GTCTC	3 cut(s)	353, 772, 791
BstMBI	GATC	5 cut(s)	91, 146, 376, 450, 667
BstMWI	GCNNNNNNNGC	9 cut(s)	268, 379, 430, 439, 829, 947, 974, 1157, 1325
BstNI	CCWGG	1 cut(s)	1266
BstSCI	CCNGG	3 cut(s)	15, 1264, 1282
BstSFI	CTRYAG	4 cut(s)	96, 915, 1092, 1311
BstSLI	GKGCMC	2 cut(s)	327, 1223
BstV1I	GCAGC	5 cut(s)	110, 142, 901, 952, 1215
BstV2I	GAAGAC	2 cut(s)	13, 738
BstX2I	RGATCY	1 cut(s)	91
BstYI	RGATCY	1 cut(s)	91
BsuI	GTATCC	2 cut(s)	124, 1272
BsuRI	GGCC	4 cut(s)	271, 533, 867, 1328
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	4 cut(s)	892, 967, 979, 1255
BtsI	GCAGTG	1 cut(s)	1030
BtsIMutI	CAGTG	4 cut(s)	548, 1030, 1150, 1288
Cac8I	GCNNGC	1 cut(s)	751
CfoI	GCGC	1 cut(s)	834
Cfr13I	GGNCC	2 cut(s)	532, 1326
Csp6I	GTAC	1 cut(s)	908
CviAII	CATG	8 cut(s)	25, 70, 226, 267, 736, 958, 1199, 1245
CviQI	GTAC	1 cut(s)	908
DdeI	CTNAG	2 cut(s)	102, 498
DpnI	GATC	5 cut(s)	93, 148, 378, 452, 669
DpnII	GATC	5 cut(s)	91, 146, 376, 450, 667
DraIII	CACNNNGTG	1 cut(s)	1294
Eam1104I	CTCTTC	2 cut(s)	762, 876
EarI	CTCTTC	2 cut(s)	762, 876
EciI	GGCGGA	1 cut(s)	249
Eco130I	CCWWGG	1 cut(s)	266
Eco31I	GGTCTC	1 cut(s)	353
Eco32I	GATATC	1 cut(s)	12
Eco57I	CTGAAG	1 cut(s)	404
EcoNI	CCTNNNNNAGG	1 cut(s)	1229
EcoRII	CCWGG	1 cut(s)	1264
EcoRV	GATATC	1 cut(s)	12
EcoT14I	CCWWGG	1 cut(s)	266
ErhI	CCWWGG	1 cut(s)	266
FaeI	CATG	8 cut(s)	28, 73, 229, 270, 739, 961, 1202, 1248
FaqI	GGGAC	1 cut(s)	1299
FatI	CATG	8 cut(s)	24, 69, 225, 266, 735, 957, 1198, 1244
FauI	CCCGC	1 cut(s)	482
FbaI	TGATCA	2 cut(s)	376, 450
Fnu4HI	GCNGC	6 cut(s)	99, 156, 284, 915, 966, 1204
FokI	GGATG	4 cut(s)	899, 974, 986, 1262
Fsp4HI	GCNGC	6 cut(s)	99, 156, 284, 915, 966, 1204
FspBI	CTAG	3 cut(s)	693, 782, 969
GlaI	GCGC	1 cut(s)	833
GluI	GCNGC	6 cut(s)	99, 156, 284, 915, 966, 1204
HaeIII	GGCC	4 cut(s)	271, 533, 867, 1328
HapII	CCGG	4 cut(s)	17, 338, 1276, 1283
HhaI	GCGC	1 cut(s)	834
Hin1II	CATG	8 cut(s)	28, 73, 229, 270, 739, 961, 1202, 1248
Hin6I	GCGC	1 cut(s)	832
HinP1I	GCGC	1 cut(s)	832
HincII	GTYRAC	1 cut(s)	955
HindII	GTYRAC	1 cut(s)	955
HinfI	GANTC	4 cut(s)	229, 785, 1007, 1109
HpaII	CCGG	4 cut(s)	17, 338, 1276, 1283
HphI	GGTGA	1 cut(s)	1246
Hpy166II	GTNNAC	1 cut(s)	955
Hpy188I	TCNGA	6 cut(s)	122, 455, 472, 499, 790, 1001
Hpy188III	TCNNGA	5 cut(s)	343, 671, 841, 899, 1113
Hpy8I	GTNNAC	1 cut(s)	955
HpyAV	CCTTC	3 cut(s)	644, 1073, 1346
HpyCH4III	ACNGT	5 cut(s)	215, 552, 597, 802, 1145
HpyCH4IV	ACGT	1 cut(s)	646
HpyF10VI	GCNNNNNNNGC	9 cut(s)	268, 379, 430, 439, 829, 947, 974, 1157, 1325
HpyF3I	CTNAG	2 cut(s)	102, 498
HpySE526I	ACGT	1 cut(s)	646
Hsp92II	CATG	8 cut(s)	28, 73, 229, 270, 739, 961, 1202, 1248
HspAI	GCGC	1 cut(s)	832
Ksp22I	TGATCA	2 cut(s)	376, 450
Kzo9I	GATC	5 cut(s)	91, 146, 376, 450, 667
LmnI	GCTCC	4 cut(s)	319, 839, 931, 1148
Lsp1109I	GCAGC	5 cut(s)	110, 142, 901, 952, 1215
LweI	GCATC	9 cut(s)	291, 429, 466, 943, 952, 964, 1147, 1240, 1306
MaeI	CTAG	3 cut(s)	693, 782, 969
MaeII	ACGT	1 cut(s)	646
MaeIII	GTNAC	3 cut(s)	340, 1096, 1139
MalI	GATC	5 cut(s)	93, 148, 378, 452, 669
MboI	GATC	5 cut(s)	91, 146, 376, 450, 667
MboII	GAAGA	9 cut(s)	13, 198, 397, 529, 743, 751, 779, 893, 1251
MflI	RGATCY	1 cut(s)	91
MhlI	GDGCHC	3 cut(s)	327, 350, 1223
MlyI	GAGTC	1 cut(s)	1001
MseI	TTAA	3 cut(s)	44, 756, 1014
MspA1I	CMGCKG	2 cut(s)	382, 489
MspI	CCGG	4 cut(s)	17, 338, 1276, 1283
MspR9I	CCNGG	3 cut(s)	17, 1266, 1284
MvaI	CCWGG	1 cut(s)	1266
MwoI	GCNNNNNNNGC	9 cut(s)	268, 379, 430, 439, 829, 947, 974, 1157, 1325
NciI	CCSGG	2 cut(s)	17, 1284
NcoI	CCATGG	1 cut(s)	266
NdeII	GATC	5 cut(s)	91, 146, 376, 450, 667
NlaIII	CATG	8 cut(s)	28, 73, 229, 270, 739, 961, 1202, 1248
NlaIV	GGNNCC	4 cut(s)	61, 255, 324, 1222
NmuCI	GTSAC	2 cut(s)	340, 1096
PfeI	GAWTC	3 cut(s)	229, 785, 1109
PflMI	CCANNNNNTGG	1 cut(s)	250
PkrI	GCNGC	6 cut(s)	100, 157, 285, 916, 967, 1205
PleI	GAGTC	1 cut(s)	1001
PpsI	GAGTC	1 cut(s)	1001
PshBI	ATTAAT	1 cut(s)	1014
Psp6I	CCWGG	1 cut(s)	1264
PspGI	CCWGG	1 cut(s)	1264
PspN4I	GGNNCC	4 cut(s)	61, 255, 324, 1222
PspPI	GGNCC	2 cut(s)	532, 1326
PstI	CTGCAG	4 cut(s)	100, 919, 1096, 1315
PsuI	RGATCY	1 cut(s)	91
PvuII	CAGCTG	1 cut(s)	382
RsaI	GTAC	1 cut(s)	909
RsaNI	GTAC	1 cut(s)	908
SaqAI	TTAA	3 cut(s)	44, 756, 1014
SatI	GCNGC	6 cut(s)	99, 156, 284, 915, 966, 1204
Sau3AI	GATC	5 cut(s)	91, 146, 376, 450, 667
Sau96I	GGNCC	2 cut(s)	532, 1326
SchI	GAGTC	1 cut(s)	1001
ScrFI	CCNGG	3 cut(s)	17, 1266, 1284
SduI	GDGCHC	3 cut(s)	327, 350, 1223
SfaNI	GCATC	9 cut(s)	291, 429, 466, 943, 952, 964, 1147, 1240, 1306
SfcI	CTRYAG	4 cut(s)	96, 915, 1092, 1311
SmlI	CTYRAG	2 cut(s)	434, 794
SmoI	CTYRAG	2 cut(s)	434, 794
SsiI	CCGC	6 cut(s)	260, 284, 363, 489, 613, 626
SspMI	CTAG	3 cut(s)	693, 782, 969
StyD4I	CCNGG	3 cut(s)	15, 1264, 1282
StyI	CCWWGG	1 cut(s)	266
TaaI	ACNGT	5 cut(s)	215, 552, 597, 802, 1145
TaiI	ACGT	1 cut(s)	649
TaqI	TCGA	2 cut(s)	274, 670
TatI	WGTACW	1 cut(s)	907
TauI	GCSGC	1 cut(s)	286
TfiI	GAWTC	3 cut(s)	229, 785, 1109
Tru1I	TTAA	3 cut(s)	44, 756, 1014
Tru9I	TTAA	3 cut(s)	44, 756, 1014
TscAI	CASTG	4 cut(s)	555, 1030, 1150, 1295
TseFI	GTSAC	2 cut(s)	340, 1096
TseI	GCWGC	5 cut(s)	98, 155, 914, 965, 1203
Tsp45I	GTSAC	2 cut(s)	340, 1096
TspDTI	ATGAA	8 cut(s)	13, 98, 242, 675, 696, 752, 869, 1092
TspRI	CASTG	4 cut(s)	555, 1030, 1150, 1295
Van91I	CCANNNNNTGG	1 cut(s)	250
VspI	ATTAAT	1 cut(s)	1014
XagI	CCTNNNNNAGG	1 cut(s)	1229
XapI	RAATTY	6 cut(s)	194, 388, 893, 994, 1168, 1181
XcmI	CCANNNNNNNNNTGG	2 cut(s)	316, 724
XspI	CTAG	3 cut(s)	693, 782, 969

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.