Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1A

Orthogroup ID

OG0004138

Physical Location & Seq

Genomic Coordinates Reverse (-)

50136724 .. 50139070

Gene Structure 2347 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1AG273400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1233 bp

ATGAATCCAAATCCGTACCAACCTATGGCACCTCCACCTCCATGGCCTCGAATGCTGCCGCCTAACCCTCCTATGGTGCCGCCCAACCCTCCGGTGACGAGCACTTTCTGGGAGACCGCAAATGTGCGTGATCAGCTGAAGAATTTGCAGGACACTCTTGGTCTTGCAAAAGCAATGCAGAAAGAGCTTGAGATGCTGATGTTGATGAAAGAGGGTAAGGGGTCTGATGATGATGCTTCTGTCAGCGGGTTTTCTGAGTTTTTGAAAGACAGGAAGATTGATTTGGAGGCGCAAGTGTTGCAATCAGTGGAAGCTGCAAACTCTTTAATGGCGAAACTACGAGTTGAGCTTGAACCGTTTAGAGCGATCACGCATGAAATGTGTCCCTGGGAGGAAAAGTCTGCGGCTGTAAGGTTATCCAATAAGATATGCAAGTCCAAGAGGAATAAACGGTGGAGGAAAAGAAAGAGGAAGCGCATTGCGGAGATGATTGCAAAGGAACGTGAAGGGTTTGATGAAGCTGATCGAGAAGCTGATGAATGGAGAGCTAGGGAAATTGCAAAGGATATTGCCAAACGCAAGATGGAAGACATGAAGAAAATTGCAAGCCTTAAAGCAAAGGAAGAGAGAAAGAGACTAGAATCCGAGCTTGAGACAGTATTGATTGTTGAGAAACTGCAAGAGTTGCGCTCCATCAGGATTGAGAAAATGAAGAAACAAGGCCATTTTCTCCCAGAAGAGGATGATAAATTTCTTGAAAGAGTACGAGCTGCAGTTGAGGAGGAGGAGCATCAAGCAATCTTGGCAGCTGACATGGATGCTGCTAGGGATGCCATTGCAACTGCTGAGCAATCGAGGAAAACAACCGAGAATTTCAGACCTGACTCCATTGATCAAAGCAGCAGTGCTAAAGGCGAGAGTAAGGAAAGTAAAGGCCAGACAATTCCAAGCACTAATGGAGGCGACTCTGCTGCAGTCACTAACAAGGAATCTGGAAAACAAGTTCTACAGGGAGAGGGTTATAGTGGAGCTTATGATGCTGTGGCAAATTTACCTATGGAATTTTATCACTACTATCATGGTAGCAATACTGATATGGGCACCCTTATTGAGGTCAGAAGAACATGGGATGCCTATATAAGACCAGGAGGAAGCCGGATGCCAGGACACTGGGTTCAACCTCCACCTCCTGCTGATGATATCTGGGCCTCGTACCTTCTGCAACCTAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005681 GO:0005689 GO:0008150 GO:0009719 GO:0009725 GO:0009966 GO:0009967 GO:0010033 GO:0010646 GO:0010647 GO:0010941 GO:0010942 GO:0014070 GO:0023051 GO:0023056 GO:0031960 GO:0032991 GO:0033993 GO:0042221 GO:0042981 GO:0043065 GO:0043067 GO:0043068 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044464 GO:0048518 GO:0048522 GO:0048545 GO:0048583 GO:0048584 GO:0050789 GO:0050794 GO:0050896 GO:0051384 GO:0065007 GO:0070228 GO:0070230 GO:0070232 GO:0070234 GO:1990904 GO:2000106 GO:2000108 GO:2001233 GO:2001235

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PDCD7

Protein Analysis

410

Amino Acids

46.65

Weight (kDa)

6.67

Isoelectric Point (pI)

55.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PDCD7	PF16021	334 - 406	1.5e-10	Programmed cell death protein 7

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0004138)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46200 AT2G46200 AT2G46200 AT2G46200
fragaria_vesca	FvH4_7g15540 FvH4_7g15540
malus_domestica	MD07G1130200.v1.1
prunus_persica	Prupe.2G179100_v2.0.a1 Prupe.2G179100_v2.0.a1
pyrus_communis	pycom07g12710
rosa_chinensis	RchiOBHm_Chr1g0357891 RchiOBHm_Chr1g0358051 RchiOBHm_Chr1g0358091 RchiOBHm_Chr1g0358181
rosa_laevigata	RLG00000027984 RLG00000027987
rosa_multiflora	Rmu_sc0002071.1_g000008 Rmu_sc0007849.1_g000015
rosa_roxburghii	Rroxscaffold_4G00298380 Rroxscaffold_4G00298430
rosa_rugosa	Rorug01G0259300 Rorug01G0259400 Rorug01G0259500 Rorug01G0259600 Rorug01G0259700
rosa_samantha	Rh1AG273200 Rh1AG273400 Rh1BG240600 Rh1CG257000 Rh1DG268900 Rh1DG269500
rosa_wichuraiana	Rw1G024400 Rw1G024440

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	3 cut(s)	28, 76, 1100
AccB7I	CCANNNNNTGG	1 cut(s)	25
AciI	CCGC	6 cut(s)	59, 80, 117, 246, 404, 482
AcsI	RAATTY	5 cut(s)	142, 749, 871, 1048, 1061
AcuI	CTGAAG	1 cut(s)	158
AfaI	GTAC	3 cut(s)	17, 765, 1214
AfiI	CCNNNNNNNGG	4 cut(s)	25, 73, 739, 1111
AgsI	TTSAA	4 cut(s)	265, 353, 758, 1178
AjnI	CCWGG	3 cut(s)	386, 1144, 1162
AjuI	GAANNNNNNNTTGG	2 cut(s)	266, 298
AloI	GAACNNNNNNTCC	4 cut(s)	987, 1019, 1158, 1190
Alw21I	GWGCWC	1 cut(s)	104
Alw26I	GTCTC	3 cut(s)	107, 628, 647
AoxI	GGCC	4 cut(s)	44, 721, 934, 1206
ApeKI	GCWGC	7 cut(s)	55, 314, 770, 806, 821, 900, 971
ApoI	RAATTY	5 cut(s)	142, 749, 871, 1048, 1061
AspLEI	GCGC	3 cut(s)	292, 477, 690
AspS9I	GGNCC	1 cut(s)	1206
AsuHPI	GGTGA	1 cut(s)	106
BaeGI	GKGCMC	1 cut(s)	1103
BanI	GGYRCC	3 cut(s)	28, 76, 1100
BbsI	GAAGAC	1 cut(s)	594
Bbv12I	GWGCWC	1 cut(s)	104
BbvI	GCAGC	7 cut(s)	42, 301, 757, 808, 818, 912, 958
BccI	CCATC	2 cut(s)	577, 701
BcgI	CGANNNNNNTGC	2 cut(s)	953, 987
BciT130I	CCWGG	3 cut(s)	388, 1146, 1164
BclI	TGATCA	2 cut(s)	130, 892
BcoDI	GTCTC	3 cut(s)	107, 628, 647
BfaI	CTAG	3 cut(s)	549, 638, 825
BfmI	CTRYAG	3 cut(s)	771, 972, 1007
BlpI	GCTNAGC	1 cut(s)	846
Bme1390I	CCNGG	3 cut(s)	388, 1146, 1164
BmgT120I	GGNCC	1 cut(s)	1206
BmiI	GGNNCC	3 cut(s)	30, 78, 1102
BmrFI	CCNGG	3 cut(s)	388, 1146, 1164
BmrI	ACTGGG	1 cut(s)	1180
BmsI	GCATC	8 cut(s)	183, 223, 799, 808, 820, 1027, 1120, 1149
BmuI	ACTGGG	1 cut(s)	1180
BpiI	GAAGAC	1 cut(s)	594
BplI	GAGNNNNNCTC	2 cut(s)	674, 706
Bpu1102I	GCTNAGC	1 cut(s)	846
BpuEI	CTTGAG	2 cut(s)	209, 671
BsaI	GGTCTC	1 cut(s)	107
BsaJI	CCNNGG	3 cut(s)	41, 386, 387
BsaWI	WCCGGW	1 cut(s)	91
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	4 cut(s)	25, 73, 739, 1111
Bse1I	ACTGG	1 cut(s)	1175
Bse3DI	GCAATG	3 cut(s)	180, 477, 834
BseBI	CCWGG	3 cut(s)	388, 1146, 1164
BseDI	CCNNGG	3 cut(s)	41, 386, 387
BseGI	GGATG	5 cut(s)	748, 823, 835, 1135, 1164
BseLI	CCNNNNNNNGG	4 cut(s)	25, 73, 739, 1111
BseMI	GCAATG	3 cut(s)	180, 477, 834
BseMII	CTCAG	2 cut(s)	246, 837
BseNI	ACTGG	1 cut(s)	1175
BseRI	GAGGAG	3 cut(s)	794, 797, 800
BseSI	GKGCMC	1 cut(s)	1103
BseXI	GCAGC	7 cut(s)	42, 301, 757, 808, 818, 912, 958
BshFI	GGCC	4 cut(s)	46, 723, 936, 1208
BshNI	GGYRCC	3 cut(s)	28, 76, 1100
BsiHKAI	GWGCWC	1 cut(s)	104
BsiSI	CCGG	2 cut(s)	92, 1156
BslFI	GGGAC	1 cut(s)	369
BslI	CCNNNNNNNGG	4 cut(s)	25, 73, 739, 1111
BsmAI	GTCTC	3 cut(s)	107, 628, 647
BsmFI	GGGAC	1 cut(s)	369
BsmI	GAATGC	1 cut(s)	57
BsnI	GGCC	4 cut(s)	46, 723, 936, 1208
Bso31I	GGTCTC	1 cut(s)	107
Bsp1286I	GDGCHC	2 cut(s)	104, 1103
Bsp143I	GATC	4 cut(s)	130, 366, 523, 892
Bsp1720I	GCTNAGC	1 cut(s)	846
Bsp19I	CCATGG	1 cut(s)	41
BspACI	CCGC	6 cut(s)	59, 80, 117, 246, 404, 482
BspANI	GGCC	4 cut(s)	46, 723, 936, 1208
BspCNI	CTCAG	2 cut(s)	247, 838
BspLI	GGNNCC	3 cut(s)	30, 78, 1102
BspMAI	CTGCAG	2 cut(s)	775, 976
BspT107I	GGYRCC	3 cut(s)	28, 76, 1100
BspTNI	GGTCTC	1 cut(s)	107
BsrDI	GCAATG	3 cut(s)	180, 477, 834
BsrI	ACTGG	1 cut(s)	1175
BssECI	CCNNGG	3 cut(s)	41, 386, 387
BssMI	GATC	4 cut(s)	130, 366, 523, 892
BssT1I	CCWWGG	1 cut(s)	41
Bst2UI	CCWGG	3 cut(s)	388, 1146, 1164
Bst4CI	ACNGT	3 cut(s)	357, 453, 658
Bst6I	CTCTTC	2 cut(s)	618, 732
BstAPI	GCANNNNNTGC	2 cut(s)	298, 685
BstC8I	GCNNGC	1 cut(s)	607
BstDEI	CTNAG	2 cut(s)	255, 846
BstDSI	CCRYGG	1 cut(s)	41
BstENI	CCTNNNNNAGG	1 cut(s)	1109
BstF5I	GGATG	5 cut(s)	748, 823, 835, 1135, 1164
BstHHI	GCGC	3 cut(s)	292, 477, 690
BstKTI	GATC	4 cut(s)	133, 369, 526, 895
BstMAI	GTCTC	3 cut(s)	107, 628, 647
BstMBI	GATC	4 cut(s)	130, 366, 523, 892
BstMWI	GCNNNNNNNGC	9 cut(s)	52, 133, 184, 193, 298, 685, 803, 830, 1037
BstNI	CCWGG	3 cut(s)	388, 1146, 1164
BstSCI	CCNGG	3 cut(s)	386, 1144, 1162
BstSFI	CTRYAG	3 cut(s)	771, 972, 1007
BstSLI	GKGCMC	1 cut(s)	1103
BstV1I	GCAGC	7 cut(s)	42, 301, 757, 808, 818, 912, 958
BstV2I	GAAGAC	1 cut(s)	594
BstXI	CCANNNNNNTGG	2 cut(s)	42, 1170
BsuRI	GGCC	4 cut(s)	46, 723, 936, 1208
BtgI	CCRYGG	1 cut(s)	41
BtsCI	GGATG	5 cut(s)	748, 823, 835, 1135, 1164
BtsI	GCAGTG	1 cut(s)	910
BtsIMutI	CAGTG	3 cut(s)	312, 910, 1168
Cac8I	GCNNGC	1 cut(s)	607
CfoI	GCGC	3 cut(s)	292, 477, 690
Cfr13I	GGNCC	1 cut(s)	1206
Csp6I	GTAC	3 cut(s)	16, 764, 1213
CviAII	CATG	6 cut(s)	42, 374, 592, 814, 1079, 1125
CviQI	GTAC	3 cut(s)	16, 764, 1213
DdeI	CTNAG	2 cut(s)	255, 846
DpnI	GATC	4 cut(s)	132, 368, 525, 894
DpnII	GATC	4 cut(s)	130, 366, 523, 892
Eam1104I	CTCTTC	2 cut(s)	618, 732
EarI	CTCTTC	2 cut(s)	618, 732
Eco130I	CCWWGG	1 cut(s)	41
Eco31I	GGTCTC	1 cut(s)	107
Eco32I	GATATC	1 cut(s)	1201
Eco57I	CTGAAG	1 cut(s)	158
EcoNI	CCTNNNNNAGG	1 cut(s)	1109
EcoRII	CCWGG	3 cut(s)	386, 1144, 1162
EcoRV	GATATC	1 cut(s)	1201
EcoT14I	CCWWGG	1 cut(s)	41
ErhI	CCWWGG	1 cut(s)	41
FaeI	CATG	6 cut(s)	45, 377, 595, 817, 1082, 1128
FaqI	GGGAC	1 cut(s)	369
FatI	CATG	6 cut(s)	41, 373, 591, 813, 1078, 1124
FauI	CCCGC	1 cut(s)	239
FbaI	TGATCA	2 cut(s)	130, 892
FokI	GGATG	5 cut(s)	755, 830, 842, 1142, 1171
FspBI	CTAG	3 cut(s)	549, 638, 825
GlaI	GCGC	3 cut(s)	291, 476, 689
HaeIII	GGCC	4 cut(s)	46, 723, 936, 1208
HapII	CCGG	2 cut(s)	92, 1156
HhaI	GCGC	3 cut(s)	292, 477, 690
Hin1II	CATG	6 cut(s)	45, 377, 595, 817, 1082, 1128
Hin6I	GCGC	3 cut(s)	290, 475, 688
HinP1I	GCGC	3 cut(s)	290, 475, 688
HinfI	GANTC	5 cut(s)	4, 641, 884, 965, 989
HpaII	CCGG	2 cut(s)	92, 1156
HphI	GGTGA	1 cut(s)	106
Hpy188I	TCNGA	5 cut(s)	226, 256, 646, 878, 1118
Hpy188III	TCNNGA	4 cut(s)	527, 697, 755, 993
HpyAV	CCTTC	2 cut(s)	500, 1226
HpyCH4III	ACNGT	3 cut(s)	357, 453, 658
HpyCH4IV	ACGT	1 cut(s)	502
HpyF10VI	GCNNNNNNNGC	9 cut(s)	52, 133, 184, 193, 298, 685, 803, 830, 1037
HpyF3I	CTNAG	2 cut(s)	255, 846
HpySE526I	ACGT	1 cut(s)	502
Hsp92II	CATG	6 cut(s)	45, 377, 595, 817, 1082, 1128
HspAI	GCGC	3 cut(s)	290, 475, 688
Ksp22I	TGATCA	2 cut(s)	130, 892
Kzo9I	GATC	4 cut(s)	130, 366, 523, 892
LmnI	GCTCC	3 cut(s)	695, 787, 1028
Lsp1109I	GCAGC	7 cut(s)	42, 301, 757, 808, 818, 912, 958
LweI	GCATC	8 cut(s)	183, 223, 799, 808, 820, 1027, 1120, 1149
MaeI	CTAG	3 cut(s)	549, 638, 825
MaeII	ACGT	1 cut(s)	502
MaeIII	GTNAC	2 cut(s)	94, 976
MalI	GATC	4 cut(s)	132, 368, 525, 894
MboI	GATC	4 cut(s)	130, 366, 523, 892
MboII	GAAGA	8 cut(s)	151, 286, 599, 607, 635, 724, 749, 1131
MhlI	GDGCHC	2 cut(s)	104, 1103
MluCI	AATT	8 cut(s)	142, 555, 600, 749, 871, 942, 1048, 1061
MlyI	GAGTC	2 cut(s)	878, 959
MseI	TTAA	2 cut(s)	326, 612
MslI	CAYNNNNRTG	1 cut(s)	40
MspA1I	CMGCKG	3 cut(s)	136, 246, 809
MspI	CCGG	2 cut(s)	92, 1156
MspR9I	CCNGG	3 cut(s)	388, 1146, 1164
Mva1269I	GAATGC	1 cut(s)	57
MvaI	CCWGG	3 cut(s)	388, 1146, 1164
MwoI	GCNNNNNNNGC	9 cut(s)	52, 133, 184, 193, 298, 685, 803, 830, 1037
NcoI	CCATGG	1 cut(s)	41
NdeII	GATC	4 cut(s)	130, 366, 523, 892
NlaIII	CATG	6 cut(s)	45, 377, 595, 817, 1082, 1128
NlaIV	GGNNCC	3 cut(s)	30, 78, 1102
NmuCI	GTSAC	2 cut(s)	94, 976
PasI	CCCWGGG	1 cut(s)	387
PctI	GAATGC	1 cut(s)	57
PfeI	GAWTC	3 cut(s)	4, 641, 989
PflMI	CCANNNNNTGG	1 cut(s)	25
PleI	GAGTC	2 cut(s)	878, 959
PpsI	GAGTC	2 cut(s)	878, 959
Psp6I	CCWGG	3 cut(s)	386, 1144, 1162
PspGI	CCWGG	3 cut(s)	386, 1144, 1162
PspN4I	GGNNCC	3 cut(s)	30, 78, 1102
PspPI	GGNCC	1 cut(s)	1206
PstI	CTGCAG	2 cut(s)	775, 976
PvuII	CAGCTG	2 cut(s)	136, 809
RsaI	GTAC	3 cut(s)	17, 765, 1214
RsaNI	GTAC	3 cut(s)	16, 764, 1213
RseI	CAYNNNNRTG	1 cut(s)	40
SaqAI	TTAA	2 cut(s)	326, 612
Sau3AI	GATC	4 cut(s)	130, 366, 523, 892
Sau96I	GGNCC	1 cut(s)	1206
SchI	GAGTC	2 cut(s)	878, 959
ScrFI	CCNGG	3 cut(s)	388, 1146, 1164
SduI	GDGCHC	2 cut(s)	104, 1103
SfaNI	GCATC	8 cut(s)	183, 223, 799, 808, 820, 1027, 1120, 1149
SfcI	CTRYAG	3 cut(s)	771, 972, 1007
SmiMI	CAYNNNNRTG	1 cut(s)	40
SmlI	CTYRAG	2 cut(s)	188, 650
SmoI	CTYRAG	2 cut(s)	188, 650
Sse9I	AATT	8 cut(s)	142, 555, 600, 749, 871, 942, 1048, 1061
SsiI	CCGC	6 cut(s)	59, 80, 117, 246, 404, 482
SspMI	CTAG	3 cut(s)	549, 638, 825
StyD4I	CCNGG	3 cut(s)	386, 1144, 1162
StyI	CCWWGG	1 cut(s)	41
TaaI	ACNGT	3 cut(s)	357, 453, 658
TaiI	ACGT	1 cut(s)	505
TaqI	TCGA	3 cut(s)	49, 526, 854
TasI	AATT	8 cut(s)	142, 555, 600, 749, 871, 942, 1048, 1061
TauI	GCSGC	3 cut(s)	61, 82, 407
TfiI	GAWTC	3 cut(s)	4, 641, 989
Tru1I	TTAA	2 cut(s)	326, 612
Tru9I	TTAA	2 cut(s)	326, 612
TscAI	CASTG	3 cut(s)	312, 910, 1175
TseFI	GTSAC	2 cut(s)	94, 976
TseI	GCWGC	7 cut(s)	55, 314, 770, 806, 821, 900, 971
Tsp45I	GTSAC	2 cut(s)	94, 976
TspDTI	ATGAA	7 cut(s)	17, 221, 390, 531, 552, 608, 725
TspRI	CASTG	3 cut(s)	312, 910, 1175
Van91I	CCANNNNNTGG	1 cut(s)	25
XagI	CCTNNNNNAGG	1 cut(s)	1109
XapI	RAATTY	5 cut(s)	142, 749, 871, 1048, 1061
XcmI	CCANNNNNNNNNTGG	1 cut(s)	580
XspI	CTAG	3 cut(s)	549, 638, 825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.