Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

19011462 .. 19013018

Gene Structure 1557 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46310.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 885 bp

ATGAAAAGCCGAGTGAGAAAATCCAAGTACACGGTTCACCGGAAAATCACATCCACACCGTTCGACGGTTTCCCGAAGATTGTCAAAATCATAGTCACTGACCCATGCGCTACTGATTCTTCCAGCGATGAGGAAAACGACAACAAATCTGTTGCTCCGAGGGTGAAACGTTATGTGGATGAGATCAGGTTCTGTGACGAAGATGACGAACCTAAACCGGCGAGGAAAGCGAAGAAAAAGTCCCCGGCGGCTGCGGCGGAGAACGGTGGAGATTTGGTAAAGTCTGTGGTGAAGTATAGAGGAGTGAGACAACGACCTTGGGGAAAATTTGCGGCGGAGATTCGTGATCCTTCGAGTCGTACTAGACTCTGGCTTGGGACTTTTGCGACGGCGGAGGAAGCTGCTATAGGTTACGATAGAGCCGCGATTCGAATCAAAGGTCATAACGCTCAGACGAATTTTCTCACTCCTCCTCCTAGTCCGACGACTGAGGTGTTACCGGAAACTCCGGTGATTGACCTTGAAACTGTCTCTGGTTGTGATTCGGCGAGGGAATCGCAAATCAGTCTGTGTTCTCCGACTTCTGTTCTCCGGTTTAGTCACAACGACGAAACAGAGTACAGAACAGAGCCAACGGAAGAACAAAATCCGTTTTTCTTGCCTGATTTGTTTCGCTCCGGAGATTATTTTTGGGATTCCGAAATTACCCCTGACCCTTTGTTTCTCGACGAATTCCACCAGTCCTTGTTACCAAACATCAACAACAACAACACAGTGTGTGATAAGGATACGAATCTGTCTGATAGTTTTCCGTTGGGAGTGATCGGAGATTTCAGCTCATGGGATGTTGATGAGTTTTTCCAAGATCATTTGTTGGATAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

294

Amino Acids

33.16

Weight (kDa)

5.07

Isoelectric Point (pI)

47.46

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	98 - 148	1.9e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	425
AccIII	TCCGGA	1 cut(s)	677
AciI	CCGC	7 cut(s)	248, 254, 257, 332, 335, 392, 423
AclI	AACGTT	1 cut(s)	169
AclWI	GGATC	1 cut(s)	341
AcsI	RAATTY	3 cut(s)	326, 457, 731
AdeI	CACNNNGTG	1 cut(s)	777
AfaI	GTAC	3 cut(s)	29, 361, 620
AfiI	CCNNNNNNNGG	1 cut(s)	65
AgsI	TTSAA	1 cut(s)	524
AluBI	AGCT	2 cut(s)	401, 837
AluI	AGCT	2 cut(s)	401, 837
Alw26I	GTCTC	2 cut(s)	301, 535
AlwI	GGATC	1 cut(s)	341
AlwNI	CAGNNNCTG	1 cut(s)	192
Aor13HI	TCCGGA	1 cut(s)	677
ApeKI	GCWGC	2 cut(s)	251, 401
ApoI	RAATTY	3 cut(s)	326, 457, 731
ArsI	GACNNNNNNTTYG	6 cut(s)	78, 110, 224, 256, 424, 456
AspLEI	GCGC	1 cut(s)	110
AsuC2I	CCSGG	1 cut(s)	245
AsuHPI	GGTGA	4 cut(s)	29, 175, 301, 523
AsuII	TTCGAA	1 cut(s)	430
BbvI	GCAGC	2 cut(s)	238, 388
BceAI	ACGGC	1 cut(s)	405
BciVI	GTATCC	1 cut(s)	781
BcnI	CCSGG	1 cut(s)	245
BcoDI	GTCTC	2 cut(s)	301, 535
BfaI	CTAG	2 cut(s)	363, 477
BfmI	CTRYAG	1 cut(s)	405
BfuI	GTATCC	1 cut(s)	781
BisI	GCNGC	6 cut(s)	249, 252, 255, 333, 402, 423
BlsI	GCNGC	6 cut(s)	250, 253, 256, 334, 403, 424
Bme1390I	CCNGG	1 cut(s)	245
BmrFI	CCNGG	1 cut(s)	245
Bpu14I	TTCGAA	1 cut(s)	430
BpuMI	CCSGG	1 cut(s)	245
BsaBI	GATNNNNATC	2 cut(s)	431, 792
BsaJI	CCNNGG	3 cut(s)	158, 243, 317
BsaWI	WCCGGW	5 cut(s)	39, 499, 508, 591, 677
BsaXI	ACNNNNNCTCC	4 cut(s)	261, 291, 457, 487
Bsc4I	CCNNNNNNNGG	1 cut(s)	65
Bse118I	RCCGGY	1 cut(s)	217
Bse1I	ACTGG	1 cut(s)	739
Bse8I	GATNNNNATC	2 cut(s)	431, 792
BseAI	TCCGGA	1 cut(s)	677
BseDI	CCNNGG	3 cut(s)	158, 243, 317
BseGI	GGATG	3 cut(s)	50, 184, 850
BseJI	GATNNNNATC	2 cut(s)	431, 792
BseLI	CCNNNNNNNGG	1 cut(s)	65
BseMII	CTCAG	2 cut(s)	464, 480
BseNI	ACTGG	1 cut(s)	739
BseRI	GAGGAG	3 cut(s)	315, 459, 462
BseXI	GCAGC	2 cut(s)	238, 388
Bsh1236I	CGCG	1 cut(s)	425
BsiSI	CCGG	7 cut(s)	40, 218, 245, 500, 509, 592, 678
BslFI	GGGAC	2 cut(s)	226, 391
BslI	CCNNNNNNNGG	1 cut(s)	65
BsmAI	GTCTC	2 cut(s)	301, 535
BsmFI	GGGAC	2 cut(s)	226, 391
Bsp119I	TTCGAA	1 cut(s)	430
Bsp13I	TCCGGA	1 cut(s)	677
Bsp143I	GATC	4 cut(s)	183, 346, 822, 865
BspACI	CCGC	7 cut(s)	248, 254, 257, 332, 335, 392, 423
BspCNI	CTCAG	2 cut(s)	463, 481
BspEI	TCCGGA	1 cut(s)	677
BspFNI	CGCG	1 cut(s)	425
BspPI	GGATC	1 cut(s)	341
BspT104I	TTCGAA	1 cut(s)	430
BsrFI	RCCGGY	1 cut(s)	217
BsrI	ACTGG	1 cut(s)	739
BssAI	RCCGGY	1 cut(s)	217
BssECI	CCNNGG	3 cut(s)	158, 243, 317
BssMI	GATC	4 cut(s)	183, 346, 822, 865
BssT1I	CCWWGG	1 cut(s)	317
Bst4CI	ACNGT	6 cut(s)	34, 60, 68, 266, 529, 775
BstBI	TTCGAA	1 cut(s)	430
BstDEI	CTNAG	2 cut(s)	450, 489
BstF5I	GGATG	3 cut(s)	50, 184, 850
BstFNI	CGCG	1 cut(s)	425
BstHHI	GCGC	1 cut(s)	110
BstKTI	GATC	4 cut(s)	186, 349, 825, 868
BstMAI	GTCTC	2 cut(s)	301, 535
BstMBI	GATC	4 cut(s)	183, 346, 822, 865
BstMWI	GCNNNNNNNGC	3 cut(s)	227, 254, 398
BstSCI	CCNGG	1 cut(s)	243
BstSFI	CTRYAG	1 cut(s)	405
BstUI	CGCG	1 cut(s)	425
BstV1I	GCAGC	2 cut(s)	238, 388
BsuI	GTATCC	1 cut(s)	781
BtgZI	GCGATG	1 cut(s)	141
BtsCI	GGATG	3 cut(s)	50, 184, 850
BtsIMutI	CAGTG	2 cut(s)	96, 780
CaiI	CAGNNNCTG	1 cut(s)	192
CfoI	GCGC	1 cut(s)	110
Cfr10I	RCCGGY	1 cut(s)	217
Csp6I	GTAC	3 cut(s)	28, 360, 619
CviAII	CATG	2 cut(s)	105, 840
CviJI	RGCY	7 cut(s)	9, 251, 373, 401, 422, 631, 837
CviKI_1	RGCY	7 cut(s)	9, 251, 373, 401, 422, 631, 837
CviQI	GTAC	3 cut(s)	28, 360, 619
DdeI	CTNAG	2 cut(s)	450, 489
DpnI	GATC	4 cut(s)	185, 348, 824, 867
DpnII	GATC	4 cut(s)	183, 346, 822, 865
DraIII	CACNNNGTG	1 cut(s)	777
EciI	GGCGGA	3 cut(s)	272, 350, 407
Eco130I	CCWWGG	1 cut(s)	317
EcoRI	GAATTC	1 cut(s)	731
EcoT14I	CCWWGG	1 cut(s)	317
ErhI	CCWWGG	1 cut(s)	317
FaeI	CATG	2 cut(s)	108, 843
FaiI	YATR	7 cut(s)	92, 106, 174, 297, 407, 444, 841
FaqI	GGGAC	2 cut(s)	226, 391
FatI	CATG	2 cut(s)	104, 839
Fnu4HI	GCNGC	6 cut(s)	249, 252, 255, 333, 402, 423
FokI	GGATG	3 cut(s)	37, 191, 857
Fsp4HI	GCNGC	6 cut(s)	249, 252, 255, 333, 402, 423
FspBI	CTAG	2 cut(s)	363, 477
GlaI	GCGC	1 cut(s)	109
GluI	GCNGC	6 cut(s)	249, 252, 255, 333, 402, 423
HapII	CCGG	7 cut(s)	40, 218, 245, 500, 509, 592, 678
HhaI	GCGC	1 cut(s)	110
Hin1II	CATG	2 cut(s)	108, 843
Hin6I	GCGC	1 cut(s)	108
HinP1I	GCGC	1 cut(s)	108
HpaII	CCGG	7 cut(s)	40, 218, 245, 500, 509, 592, 678
HphI	GGTGA	4 cut(s)	29, 175, 301, 523
Hpy166II	GTNNAC	2 cut(s)	30, 37
Hpy188I	TCNGA	7 cut(s)	159, 453, 483, 579, 700, 802, 827
Hpy188III	TCNNGA	4 cut(s)	73, 344, 678, 725
Hpy8I	GTNNAC	2 cut(s)	30, 37
Hpy99I	CGWCG	5 cut(s)	68, 391, 487, 611, 731
HpyAV	CCTTC	1 cut(s)	360
HpyCH4III	ACNGT	6 cut(s)	34, 60, 68, 266, 529, 775
HpyCH4IV	ACGT	1 cut(s)	169
HpyF10VI	GCNNNNNNNGC	3 cut(s)	227, 254, 398
HpyF3I	CTNAG	2 cut(s)	450, 489
HpySE526I	ACGT	1 cut(s)	169
Hsp92II	CATG	2 cut(s)	108, 843
HspAI	GCGC	1 cut(s)	108
Kpn2I	TCCGGA	1 cut(s)	677
Kzo9I	GATC	4 cut(s)	183, 346, 822, 865
LmnI	GCTCC	2 cut(s)	160, 680
Lsp1109I	GCAGC	2 cut(s)	238, 388
MaeI	CTAG	2 cut(s)	363, 477
MaeII	ACGT	1 cut(s)	169
MaeIII	GTNAC	6 cut(s)	94, 194, 410, 495, 599, 747
MalI	GATC	4 cut(s)	185, 348, 824, 867
MboI	GATC	4 cut(s)	183, 346, 822, 865
MboII	GAAGA	5 cut(s)	88, 111, 212, 244, 650
MluCI	AATT	4 cut(s)	326, 457, 702, 731
MlyI	GAGTC	2 cut(s)	360, 364
MmeI	TCCRAC	3 cut(s)	506, 602, 855
MnlI	CCTC	9 cut(s)	124, 153, 216, 293, 388, 480, 483, 484, 543
MroI	TCCGGA	1 cut(s)	677
MspI	CCGG	7 cut(s)	40, 218, 245, 500, 509, 592, 678
MspR9I	CCNGG	1 cut(s)	245
MvnI	CGCG	1 cut(s)	425
MwoI	GCNNNNNNNGC	3 cut(s)	227, 254, 398
NciI	CCSGG	1 cut(s)	245
NdeII	GATC	4 cut(s)	183, 346, 822, 865
NlaIII	CATG	2 cut(s)	108, 843
NmeAIII	GCCGAG	1 cut(s)	35
NmuCI	GTSAC	3 cut(s)	94, 194, 599
NspV	TTCGAA	1 cut(s)	430
PcsI	WCGNNNNNNNCGW	1 cut(s)	204
PfeI	GAWTC	8 cut(s)	116, 340, 427, 432, 542, 554, 695, 793
PkrI	GCNGC	6 cut(s)	250, 253, 256, 334, 403, 424
PleI	GAGTC	2 cut(s)	360, 363
PpsI	GAGTC	2 cut(s)	360, 363
Psp1406I	AACGTT	1 cut(s)	169
PstNI	CAGNNNCTG	1 cut(s)	192
RsaI	GTAC	3 cut(s)	29, 361, 620
RsaNI	GTAC	3 cut(s)	28, 360, 619
SatI	GCNGC	6 cut(s)	249, 252, 255, 333, 402, 423
Sau3AI	GATC	4 cut(s)	183, 346, 822, 865
SchI	GAGTC	2 cut(s)	360, 364
ScrFI	CCNGG	1 cut(s)	245
SfcI	CTRYAG	1 cut(s)	405
SfuI	TTCGAA	1 cut(s)	430
Sse9I	AATT	4 cut(s)	326, 457, 702, 731
SsiI	CCGC	7 cut(s)	248, 254, 257, 332, 335, 392, 423
SspMI	CTAG	2 cut(s)	363, 477
StyD4I	CCNGG	1 cut(s)	243
StyI	CCWWGG	1 cut(s)	317
TaaI	ACNGT	6 cut(s)	34, 60, 68, 266, 529, 775
TaiI	ACGT	1 cut(s)	172
TaqI	TCGA	4 cut(s)	63, 353, 430, 726
TasI	AATT	4 cut(s)	326, 457, 702, 731
TatI	WGTACW	2 cut(s)	27, 618
TauI	GCSGC	4 cut(s)	251, 257, 335, 425
TfiI	GAWTC	8 cut(s)	116, 340, 427, 432, 542, 554, 695, 793
TscAI	CASTG	2 cut(s)	103, 780
TseFI	GTSAC	3 cut(s)	94, 194, 599
TseI	GCWGC	2 cut(s)	251, 401
Tsp45I	GTSAC	3 cut(s)	94, 194, 599
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	3 cut(s)	639, 650, 801
TspRI	CASTG	2 cut(s)	103, 780
XapI	RAATTY	3 cut(s)	326, 457, 731
XspI	CTAG	2 cut(s)	363, 477

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.