Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

37502844 .. 37503841

Gene Structure 998 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0264100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGAATCCTAATGAAACCTATTATAATGATACTAAAATCTGGCTTTGGGATGAATTATGCCCTTTGAAAGAAGCTGATCCAAAGGCGTTCGACGCTGGCATATATTTTTACGCTCTGCAATCTAATGTGGTTAGTCCATCGCATCCTCTCTTACAAAGAGTATTCCAGTCTTTTTCGTGGGCTCTACGAAATATGAGTTCTTTTGGCTCAAATCTATTTAGCAGTATGGATACGTTGGAAATCTTGTTTTCTGTTATGATATCTGCAACTGGCATGGCACTGTTTTTAGTATATCTCAATGCAATGGTGCAGGAGTCGAAAGAAAGGTCAAATAAGCGTATGTTGAAAGAGAAGAAGCAATTGATGAAACCAGATGTCGATCTGTGGTTATCTAAATACTACCCCTCTAAGGATAACGAAAAAATGGTGACCAGAGAGAAAAATGAAAATTTAAAGGCAGCGATCATGGAAAACATACACAAACTCAGAGAAAACAGTGACCTTGATGTGCAAAATATCCTTGGTATTCTTCCCATAAAAGACAAACAAAGCATCATGTCTTTTCTCTTCTCAGCTTCATTGAAGAAGGCAAGAACTTCCTCTTCCTCTACATATATAAGCTCAAAGAGCCAGTGTTTCAAACCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

215

Amino Acids

24.79

Weight (kDa)

9.05

Isoelectric Point (pI)

55.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	24
AclWI	GGATC	1 cut(s)	71
AcsI	RAATTY	1 cut(s)	448
AfiI	CCNNNNNNNGG	1 cut(s)	409
AgsI	TTSAA	4 cut(s)	67, 346, 583, 640
AluBI	AGCT	3 cut(s)	74, 575, 621
AluI	AGCT	3 cut(s)	74, 575, 621
AlwI	GGATC	1 cut(s)	71
ApeKI	GCWGC	1 cut(s)	458
ApoI	RAATTY	1 cut(s)	448
ArsI	GACNNNNNNTTYG	2 cut(s)	311, 343
AsuHPI	GGTGA	1 cut(s)	439
BanII	GRGCYC	1 cut(s)	184
BbvI	GCAGC	1 cut(s)	470
BccI	CCATC	1 cut(s)	145
BciVI	GTATCC	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	223
BisI	GCNGC	1 cut(s)	459
BlsI	GCNGC	1 cut(s)	460
BmsI	GCATC	2 cut(s)	151, 561
BsaBI	GATNNNNATC	1 cut(s)	378
BsaJI	CCNNGG	1 cut(s)	520
Bsc4I	CCNNNNNNNGG	1 cut(s)	409
Bse1I	ACTGG	3 cut(s)	166, 274, 631
Bse3DI	GCAATG	1 cut(s)	309
Bse8I	GATNNNNATC	1 cut(s)	378
BseDI	CCNNGG	1 cut(s)	520
BseGI	GGATG	2 cut(s)	55, 142
BseJI	GATNNNNATC	1 cut(s)	378
BseLI	CCNNNNNNNGG	1 cut(s)	409
BseMI	GCAATG	1 cut(s)	309
BseMII	CTCAG	2 cut(s)	499, 585
BseNI	ACTGG	3 cut(s)	166, 274, 631
BseXI	GCAGC	1 cut(s)	470
BsgI	GTGCAG	1 cut(s)	329
BslI	CCNNNNNNNGG	1 cut(s)	409
Bsp1286I	GDGCHC	1 cut(s)	184
Bsp143I	GATC	3 cut(s)	76, 379, 462
BspCNI	CTCAG	2 cut(s)	498, 584
BspPI	GGATC	1 cut(s)	71
BsrDI	GCAATG	1 cut(s)	309
BsrI	ACTGG	3 cut(s)	166, 274, 631
BssECI	CCNNGG	1 cut(s)	520
BssMI	GATC	3 cut(s)	76, 379, 462
BssT1I	CCWWGG	1 cut(s)	520
Bst4CI	ACNGT	2 cut(s)	282, 497
Bst6I	CTCTTC	2 cut(s)	572, 607
BstC8I	GCNNGC	1 cut(s)	97
BstDEI	CTNAG	3 cut(s)	408, 485, 571
BstEII	GGTNACC	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	55, 142
BstKTI	GATC	3 cut(s)	79, 382, 465
BstMBI	GATC	3 cut(s)	76, 379, 462
BstMWI	GCNNNNNNNGC	2 cut(s)	92, 627
BstPI	GGTNACC	1 cut(s)	427
BstV1I	GCAGC	1 cut(s)	470
BsuI	GTATCC	1 cut(s)	223
BtgZI	GCGATG	1 cut(s)	123
BtsCI	GGATG	2 cut(s)	55, 142
BtsIMutI	CAGTG	3 cut(s)	278, 502, 638
Cac8I	GCNNGC	1 cut(s)	97
CseI	GACGC	1 cut(s)	101
CviAII	CATG	3 cut(s)	274, 466, 556
CviJI	RGCY	7 cut(s)	43, 74, 182, 207, 575, 621, 630
CviKI_1	RGCY	7 cut(s)	43, 74, 182, 207, 575, 621, 630
DdeI	CTNAG	3 cut(s)	408, 485, 571
DpnI	GATC	3 cut(s)	78, 381, 464
DpnII	GATC	3 cut(s)	76, 379, 462
DraI	TTTAAA	1 cut(s)	453
Eam1104I	CTCTTC	2 cut(s)	572, 607
EarI	CTCTTC	2 cut(s)	572, 607
Eco130I	CCWWGG	1 cut(s)	520
Eco24I	GRGCYC	1 cut(s)	184
Eco32I	GATATC	1 cut(s)	261
Eco91I	GGTNACC	1 cut(s)	427
EcoO65I	GGTNACC	1 cut(s)	427
EcoRV	GATATC	1 cut(s)	261
EcoT14I	CCWWGG	1 cut(s)	520
EcoT38I	GRGCYC	1 cut(s)	184
ErhI	CCWWGG	1 cut(s)	520
FaeI	CATG	3 cut(s)	277, 469, 559
FatI	CATG	3 cut(s)	273, 465, 555
Fnu4HI	GCNGC	1 cut(s)	459
FokI	GGATG	2 cut(s)	62, 129
FriOI	GRGCYC	1 cut(s)	184
Fsp4HI	GCNGC	1 cut(s)	459
GluI	GCNGC	1 cut(s)	459
HgaI	GACGC	1 cut(s)	101
Hin1II	CATG	3 cut(s)	277, 469, 559
HinfI	GANTC	2 cut(s)	4, 314
HphI	GGTGA	1 cut(s)	439
Hpy188I	TCNGA	1 cut(s)	488
Hpy99I	CGWCG	1 cut(s)	95
HpyAV	CCTTC	1 cut(s)	580
HpyCH4III	ACNGT	2 cut(s)	282, 497
HpyCH4IV	ACGT	1 cut(s)	233
HpyCH4V	TGCA	5 cut(s)	118, 266, 302, 310, 511
HpyF10VI	GCNNNNNNNGC	2 cut(s)	92, 627
HpyF3I	CTNAG	3 cut(s)	408, 485, 571
HpySE526I	ACGT	1 cut(s)	233
Hsp92II	CATG	3 cut(s)	277, 469, 559
Kzo9I	GATC	3 cut(s)	76, 379, 462
LpnPI	CCDG	8 cut(s)	25, 81, 179, 255, 296, 384, 445, 644
Lsp1109I	GCAGC	1 cut(s)	470
LweI	GCATC	2 cut(s)	151, 561
MaeII	ACGT	1 cut(s)	233
MaeIII	GTNAC	2 cut(s)	427, 497
MalI	GATC	3 cut(s)	78, 381, 464
MboI	GATC	3 cut(s)	76, 379, 462
MboII	GAAGA	5 cut(s)	364, 521, 559, 594, 595
MfeI	CAATTG	1 cut(s)	359
MhlI	GDGCHC	1 cut(s)	184
MluCI	AATT	3 cut(s)	53, 359, 448
MlyI	GAGTC	1 cut(s)	323
MmeI	TCCRAC	1 cut(s)	216
MnlI	CCTC	4 cut(s)	156, 415, 610, 616
MseI	TTAA	1 cut(s)	452
MunI	CAATTG	1 cut(s)	359
MwoI	GCNNNNNNNGC	2 cut(s)	92, 627
NdeII	GATC	3 cut(s)	76, 379, 462
NlaIII	CATG	3 cut(s)	277, 469, 559
NmuCI	GTSAC	2 cut(s)	427, 497
PfeI	GAWTC	1 cut(s)	4
PkrI	GCNGC	1 cut(s)	460
PleI	GAGTC	1 cut(s)	322
PpsI	GAGTC	1 cut(s)	322
PsiI	TTATAA	1 cut(s)	24
PspEI	GGTNACC	1 cut(s)	427
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	1 cut(s)	459
Sau3AI	GATC	3 cut(s)	76, 379, 462
SchI	GAGTC	1 cut(s)	323
SduI	GDGCHC	1 cut(s)	184
SetI	ASST	7 cut(s)	20, 76, 236, 329, 504, 577, 623
SfaNI	GCATC	2 cut(s)	151, 561
Sse9I	AATT	3 cut(s)	53, 359, 448
StyI	CCWWGG	1 cut(s)	520
TaaI	ACNGT	2 cut(s)	282, 497
TaiI	ACGT	1 cut(s)	236
TaqI	TCGA	3 cut(s)	90, 317, 378
TasI	AATT	3 cut(s)	53, 359, 448
TfiI	GAWTC	1 cut(s)	4
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TscAI	CASTG	3 cut(s)	285, 502, 638
TseFI	GTSAC	2 cut(s)	427, 497
TseI	GCWGC	1 cut(s)	458
Tsp45I	GTSAC	2 cut(s)	427, 497
TspDTI	ATGAA	6 cut(s)	17, 27, 66, 380, 459, 567
TspRI	CASTG	3 cut(s)	285, 502, 638
XapI	RAATTY	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.