Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr2

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

76972789 .. 76973367

Gene Structure 579 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw2G049340.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGGTGTACGACAGAGCTGCCATTCAGTTGAGGGGACATAACGCTCTCACGAATATCATCGCTCCTCATTCCAAAATTCTCATTCCGAATCACGATTCTTCTTCGAATGAGTCCAGTTCGATCAACAATCTTTCTTGTTCGAATGCGTCCAGTTCGATCAACCATATTGTTGTGATAGATGAGTATGATTTCGGGAAAGAGTGTCAGAGCATTCGCTCCCCGACCTCTGTTCTATGTGGTAGTGACAACGAGTGGAGACTTGGGTCGAAGGAGCAGGATGAAACTCATTTCGTTAAAGACTATGGTTACTTTGATGGTGTGATCAGTCCCACTAAAGCTATATTCTTCGGTGTTACAGAGCCGATTCTGTTGGAGGAAATGAACTTGGTGCCAGAAACAATGTTGGTGACGGCAAATTCAAAAACCCAGCTACTAAATTTAGAGCAGAACCTGTTCTCGGGTGGAGGAATGGGTGTTCAATTAGAGGGCAAGGGCGGCGTTGGAAGCGAGGGAGTGAGAAGGAAGAAGAAAGAGATAGAAACGAAGGAAAAAAAATTATTAAAAAAAAAAAAGAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

192

Amino Acids

21.16

Weight (kDa)

6.53

Isoelectric Point (pI)

51.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	388
AciI	CCGC	1 cut(s)	495
AcsI	RAATTY	3 cut(s)	75, 415, 436
AfaI	GTAC	1 cut(s)	8
AfiI	CCNNNNNNNGG	1 cut(s)	457
AgsI	TTSAA	2 cut(s)	420, 479
AloI	GAACNNNNNNTCC	2 cut(s)	459, 491
AluBI	AGCT	3 cut(s)	17, 338, 430
AluI	AGCT	3 cut(s)	17, 338, 430
Alw26I	GTCTC	1 cut(s)	250
AlwNI	CAGNNNCTG	1 cut(s)	451
Ama87I	CYCGRG	1 cut(s)	457
ApeKI	GCWGC	1 cut(s)	17
ApoI	RAATTY	3 cut(s)	75, 415, 436
Asp700I	GAANNNNTTC	1 cut(s)	452
AsuHPI	GGTGA	1 cut(s)	418
AsuII	TTCGAA	2 cut(s)	104, 140
AvaI	CYCGRG	1 cut(s)	457
BanI	GGYRCC	1 cut(s)	388
BbvI	GCAGC	1 cut(s)	4
BccI	CCATC	1 cut(s)	308
BceAI	ACGGC	1 cut(s)	426
BcgI	CGANNNNNNTGC	1 cut(s)	33
BclI	TGATCA	1 cut(s)	321
BcoDI	GTCTC	1 cut(s)	250
BisI	GCNGC	2 cut(s)	18, 496
BlsI	GCNGC	2 cut(s)	19, 497
BmeT110I	CYCGRG	1 cut(s)	457
BmiI	GGNNCC	1 cut(s)	390
BoxI	GACNNNNGTC	1 cut(s)	262
Bpu14I	TTCGAA	2 cut(s)	104, 140
Bsc4I	CCNNNNNNNGG	1 cut(s)	457
Bse1I	ACTGG	2 cut(s)	114, 150
BseGI	GGATG	1 cut(s)	283
BseLI	CCNNNNNNNGG	1 cut(s)	457
BseNI	ACTGG	2 cut(s)	114, 150
BseRI	GAGGAG	1 cut(s)	54
BseXI	GCAGC	1 cut(s)	4
BseYI	CCCAGC	1 cut(s)	426
BshNI	GGYRCC	1 cut(s)	388
BsiHKCI	CYCGRG	1 cut(s)	457
BslFI	GGGAC	2 cut(s)	48, 312
BslI	CCNNNNNNNGG	1 cut(s)	457
BsmAI	GTCTC	1 cut(s)	250
BsmFI	GGGAC	2 cut(s)	48, 312
BsmI	GAATGC	2 cut(s)	148, 210
BsoBI	CYCGRG	1 cut(s)	457
Bsp119I	TTCGAA	2 cut(s)	104, 140
Bsp143I	GATC	3 cut(s)	120, 156, 321
BspACI	CCGC	1 cut(s)	495
BspLI	GGNNCC	1 cut(s)	390
BspT104I	TTCGAA	2 cut(s)	104, 140
BspT107I	GGYRCC	1 cut(s)	388
BsrI	ACTGG	2 cut(s)	114, 150
BssMI	GATC	3 cut(s)	120, 156, 321
BstBI	TTCGAA	2 cut(s)	104, 140
BstF5I	GGATG	1 cut(s)	283
BstKTI	GATC	3 cut(s)	123, 159, 324
BstMAI	GTCTC	1 cut(s)	250
BstMBI	GATC	3 cut(s)	120, 156, 321
BstMWI	GCNNNNNNNGC	2 cut(s)	495, 504
BstPAI	GACNNNNGTC	1 cut(s)	262
BstV1I	GCAGC	1 cut(s)	4
BtgZI	GCGATG	1 cut(s)	43
BtsCI	GGATG	1 cut(s)	283
CaiI	CAGNNNCTG	1 cut(s)	451
CseI	GACGC	1 cut(s)	135
Csp6I	GTAC	1 cut(s)	7
CviJI	RGCY	4 cut(s)	17, 338, 361, 430
CviKI_1	RGCY	4 cut(s)	17, 338, 361, 430
CviQI	GTAC	1 cut(s)	7
DpnI	GATC	3 cut(s)	122, 158, 323
DpnII	GATC	3 cut(s)	120, 156, 321
Eco88I	CYCGRG	1 cut(s)	457
FaiI	YATR	6 cut(s)	39, 165, 186, 235, 303, 341
FaqI	GGGAC	2 cut(s)	48, 312
FbaI	TGATCA	1 cut(s)	321
Fnu4HI	GCNGC	2 cut(s)	18, 496
FokI	GGATG	1 cut(s)	290
Fsp4HI	GCNGC	2 cut(s)	18, 496
GluI	GCNGC	2 cut(s)	18, 496
GsaI	CCCAGC	1 cut(s)	430
HgaI	GACGC	1 cut(s)	135
HinfI	GANTC	4 cut(s)	88, 95, 110, 364
HphI	GGTGA	1 cut(s)	418
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	2 cut(s)	87, 207
Hpy188III	TCNNGA	3 cut(s)	49, 92, 193
Hpy8I	GTNNAC	1 cut(s)	7
HpyAV	CCTTC	3 cut(s)	262, 513, 538
HpyF10VI	GCNNNNNNNGC	2 cut(s)	495, 504
Ksp22I	TGATCA	1 cut(s)	321
Kzo9I	GATC	3 cut(s)	120, 156, 321
LmnI	GCTCC	3 cut(s)	67, 221, 271
LpnPI	CCDG	6 cut(s)	127, 163, 260, 405, 440, 464
Lsp1109I	GCAGC	1 cut(s)	4
MaeIII	GTNAC	4 cut(s)	242, 305, 352, 406
MalI	GATC	3 cut(s)	122, 158, 323
MboI	GATC	3 cut(s)	120, 156, 321
MboII	GAAGA	5 cut(s)	90, 93, 337, 535, 538
MluCI	AATT	5 cut(s)	75, 415, 436, 479, 554
MlyI	GAGTC	1 cut(s)	119
MmeI	TCCRAC	2 cut(s)	351, 481
MnlI	CCTC	7 cut(s)	24, 75, 235, 367, 458, 478, 502
MroXI	GAANNNNTTC	1 cut(s)	452
MseI	TTAA	2 cut(s)	294, 560
Mva1269I	GAATGC	2 cut(s)	148, 210
MwoI	GCNNNNNNNGC	2 cut(s)	495, 504
NdeII	GATC	3 cut(s)	120, 156, 321
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	2 cut(s)	242, 406
NspV	TTCGAA	2 cut(s)	104, 140
PctI	GAATGC	2 cut(s)	148, 210
PdmI	GAANNNNTTC	1 cut(s)	452
PfeI	GAWTC	3 cut(s)	88, 95, 364
PkrI	GCNGC	2 cut(s)	19, 497
PleI	GAGTC	1 cut(s)	118
PpsI	GAGTC	1 cut(s)	118
PshAI	GACNNNNGTC	1 cut(s)	262
PspFI	CCCAGC	1 cut(s)	426
PspN4I	GGNNCC	1 cut(s)	390
PstNI	CAGNNNCTG	1 cut(s)	451
RsaI	GTAC	1 cut(s)	8
RsaNI	GTAC	1 cut(s)	7
SaqAI	TTAA	2 cut(s)	294, 560
SatI	GCNGC	2 cut(s)	18, 496
Sau3AI	GATC	3 cut(s)	120, 156, 321
SchI	GAGTC	1 cut(s)	119
SetI	ASST	5 cut(s)	19, 227, 340, 432, 453
SfuI	TTCGAA	2 cut(s)	104, 140
Sse9I	AATT	5 cut(s)	75, 415, 436, 479, 554
SsiI	CCGC	1 cut(s)	495
TaqI	TCGA	5 cut(s)	104, 119, 140, 155, 266
TasI	AATT	5 cut(s)	75, 415, 436, 479, 554
TauI	GCSGC	1 cut(s)	498
TfiI	GAWTC	3 cut(s)	88, 95, 364
Tru1I	TTAA	2 cut(s)	294, 560
Tru9I	TTAA	2 cut(s)	294, 560
TseFI	GTSAC	2 cut(s)	242, 406
TseI	GCWGC	1 cut(s)	17
Tsp45I	GTSAC	2 cut(s)	242, 406
TspDTI	ATGAA	2 cut(s)	294, 395
XapI	RAATTY	3 cut(s)	75, 415, 436
XmnI	GAANNNNTTC	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.