RLG00000027936

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
OG0006158
Physical Location & Seq
Reverse (-)
16990718 .. 16991644
927 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000027936

Sequence Viewer

Length: 927 bp
ATGGATTCAAACTACCCAACCAAGTACACGGAGAAGAGAACCCTCATCACCAAGAAGCTTGTCAAGCATTTCCCGAACGTTGCAGTCCCTAAGATTGTCCGGATTTCCGTCACCGACGAGGACGCGACCGACACGTCCAGCGACGAAGAAGACCAAGAACAAGACCAAGACCAACAACAACAACGACGACTGACGAAGAGGGTCATCAACGAAGTGAGAATCGAAGAGGAGTCCGAGGCTGTCAGGGTGTTTCTGGCCAAGAATCAGAAGCAAAAGCCGAAGCCTTTACCGGAGGAGAAGAGGAAGTTCCGGGGCGTACGGCAGCGGCCGTGGGGCAAATGGGCCGCCGAGATTCGTGACCCGGTCCGCAAGTCCCGTGTCTGGCTCGGAACGTTTCAGACGGCGGAGGAGGCAGCGTTGGTGTACGACAGAGCTGCCATTCAGTTGAGGGGACATAACGCTCTCACGAATATCATCGCTCCTCCTCCTTCCAAAATTCTCGTTTCGGATCACGATTCTTCTTCGAATGAGTCCAGTTCGATCAACAATCTTTCTTGTTCGAATGCGTCCAGTTCGATCGACCATATTGTTGTGATAGATGAGTATGATTGCGGGAAAGAATGTCAGAGCATTCGCTCCCCGACCTCCGTTCTCAGTGGTAGTGACAACGAGTGGAGACCTGGGTCGACGGAGCAAGATGAAACCCATTTCGTTAAAGACTATGGTTACTTTGATGGTGTGATCAGTCCCACTGAAGCTATATTCTTCGGTGTTACAGAGCCGATTCTGTTGGAGGAAATGAACTTGGTGCCGGAAACAATGTTGCGAGATGATTTGTCCGACATTTCGCTGGATTCGGTTGGGGATTTCAGGTCATGTAAATGGAATGTGGAGGATTTCTTTCAAGATCAATGTGGTGGTTTCTGA

Protein Analysis

309

Amino Acids

35.02

Weight (kDa)

4.95

Isoelectric Point (pI)

63.7

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 102 - 152 4.8e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 133
AccB1I GGYRCC 1 cut(s) 808
AccI GTMKAC 1 cut(s) 686
AccII CGCG 1 cut(s) 125
AccIII TCCGGA 1 cut(s) 99
AciI CCGC 5 cut(s) 325, 345, 367, 404, 612
AclI AACGTT 2 cut(s) 78, 392
AclWI GGATC 1 cut(s) 516
AcoI YGGCCR 2 cut(s) 255, 326
AcsI RAATTY 1 cut(s) 495
AcuI CTGAAG 1 cut(s) 774
AfaI GTAC 3 cut(s) 26, 318, 425
AfiI CCNNNNNNNGG 1 cut(s) 381
AflIII ACRYGT 1 cut(s) 132
AgsI TTSAA 2 cut(s) 9, 905
AjiI CACGTC 1 cut(s) 135
AjnI CCWGG 1 cut(s) 679
AluBI AGCT 3 cut(s) 58, 434, 758
AluI AGCT 3 cut(s) 58, 434, 758
Alw26I GTCTC 1 cut(s) 670
AlwI GGATC 1 cut(s) 516
Aor13HI TCCGGA 1 cut(s) 99
AoxI GGCC 3 cut(s) 255, 326, 342
ApeKI GCWGC 3 cut(s) 322, 413, 434
ApoI RAATTY 1 cut(s) 495
AspS9I GGNCC 2 cut(s) 342, 364
AsuC2I CCSGG 2 cut(s) 311, 362
AsuHPI GGTGA 2 cut(s) 40, 103
AsuII TTCGAA 2 cut(s) 524, 560
AvaII GGWCC 1 cut(s) 364
BalI TGGCCA 1 cut(s) 257
BanI GGYRCC 1 cut(s) 808
BbsI GAAGAC 1 cut(s) 156
BbvI GCAGC 3 cut(s) 334, 421, 425
BccI CCATC 1 cut(s) 728
BceAI ACGGC 3 cut(s) 313, 335, 417
BcgI CGANNNNNNTGC 2 cut(s) 416, 450
BciT130I CCWGG 1 cut(s) 681
BclI TGATCA 1 cut(s) 741
BcnI CCSGG 2 cut(s) 311, 362
BcoDI GTCTC 1 cut(s) 670
BisI GCNGC 5 cut(s) 323, 326, 345, 414, 435
BlsI GCNGC 5 cut(s) 324, 327, 346, 415, 436
Bme1390I CCNGG 3 cut(s) 311, 362, 681
Bme18I GGWCC 1 cut(s) 364
BmgBI CACGTC 1 cut(s) 135
BmgT120I GGNCC 2 cut(s) 342, 364
BmiI GGNNCC 1 cut(s) 810
BmrFI CCNGG 3 cut(s) 311, 362, 681
BoxI GACNNNNGTC 1 cut(s) 682
BpiI GAAGAC 1 cut(s) 156
Bpu14I TTCGAA 2 cut(s) 524, 560
BpuMI CCSGG 2 cut(s) 311, 362
BsaI GGTCTC 1 cut(s) 670
BsaJI CCNNGG 4 cut(s) 234, 310, 329, 680
BsaWI WCCGGW 2 cut(s) 99, 289
BsaXI ACNNNNNCTCC 2 cut(s) 401, 431
Bsc4I CCNNNNNNNGG 1 cut(s) 381
Bse1I ACTGG 2 cut(s) 534, 570
BseAI TCCGGA 1 cut(s) 99
BseBI CCWGG 1 cut(s) 681
BseDI CCNNGG 4 cut(s) 234, 310, 329, 680
BseLI CCNNNNNNNGG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 667
BseNI ACTGG 2 cut(s) 534, 570
BseRI GAGGAG 5 cut(s) 242, 308, 422, 471, 474
BseX3I CGGCCG 1 cut(s) 326
BseXI GCAGC 3 cut(s) 334, 421, 425
Bsh1236I CGCG 1 cut(s) 125
Bsh1285I CGRYCG 3 cut(s) 129, 329, 579
BshFI GGCC 3 cut(s) 257, 328, 344
BshNI GGYRCC 1 cut(s) 808
BsiEI CGRYCG 3 cut(s) 129, 329, 579
BsiSI CCGG 5 cut(s) 100, 290, 310, 362, 812
BsiWI CGTACG 1 cut(s) 316
BslFI GGGAC 4 cut(s) 71, 358, 465, 732
BslI CCNNNNNNNGG 1 cut(s) 381
BsmAI GTCTC 1 cut(s) 670
BsmFI GGGAC 4 cut(s) 71, 358, 465, 732
BsmI GAATGC 2 cut(s) 568, 630
BsnI GGCC 3 cut(s) 257, 328, 344
Bso31I GGTCTC 1 cut(s) 670
Bsp119I TTCGAA 2 cut(s) 524, 560
Bsp13I TCCGGA 1 cut(s) 99
Bsp143I GATC 5 cut(s) 508, 540, 576, 741, 907
BspACI CCGC 5 cut(s) 325, 345, 367, 404, 612
BspANI GGCC 3 cut(s) 257, 328, 344
BspCNI CTCAG 1 cut(s) 666
BspEI TCCGGA 1 cut(s) 99
BspFNI CGCG 1 cut(s) 125
BspLI GGNNCC 1 cut(s) 810
BspPI GGATC 1 cut(s) 516
BspT104I TTCGAA 2 cut(s) 524, 560
BspT107I GGYRCC 1 cut(s) 808
BspTNI GGTCTC 1 cut(s) 670
BsrI ACTGG 2 cut(s) 534, 570
BssECI CCNNGG 4 cut(s) 234, 310, 329, 680
BssMI GATC 5 cut(s) 508, 540, 576, 741, 907
Bst2UI CCWGG 1 cut(s) 681
Bst6I CTCTTC 4 cut(s) 29, 191, 219, 293
BstBI TTCGAA 2 cut(s) 524, 560
BstDEI CTNAG 2 cut(s) 90, 653
BstDSI CCRYGG 1 cut(s) 329
BstFNI CGCG 1 cut(s) 125
BstKTI GATC 5 cut(s) 511, 543, 579, 744, 910
BstMAI GTCTC 1 cut(s) 670
BstMBI GATC 5 cut(s) 508, 540, 576, 741, 907
BstMCI CGRYCG 3 cut(s) 129, 329, 579
BstMWI GCNNNNNNNGC 2 cut(s) 64, 410
BstNI CCWGG 1 cut(s) 681
BstPAI GACNNNNGTC 1 cut(s) 682
BstSCI CCNGG 3 cut(s) 309, 360, 679
BstUI CGCG 1 cut(s) 125
BstV1I GCAGC 3 cut(s) 334, 421, 425
BstV2I GAAGAC 1 cut(s) 156
BstZI CGGCCG 1 cut(s) 326
BsuRI GGCC 3 cut(s) 257, 328, 344
BtgI CCRYGG 1 cut(s) 329
BtgZI GCGATG 1 cut(s) 460
BtrI CACGTC 1 cut(s) 135
BtsIMutI CAGTG 2 cut(s) 661, 750
Cfr13I GGNCC 2 cut(s) 342, 364
CpoI CGGWCCG 1 cut(s) 364
CseI GACGC 2 cut(s) 131, 555
Csp6I GTAC 3 cut(s) 25, 317, 424
CspI CGGWCCG 1 cut(s) 364
CviAII CATG 1 cut(s) 876
CviQI GTAC 3 cut(s) 25, 317, 424
DdeI CTNAG 2 cut(s) 90, 653
DpnI GATC 5 cut(s) 510, 542, 578, 743, 909
DpnII GATC 5 cut(s) 508, 540, 576, 741, 907
DrdI GACNNNNNNGTC 1 cut(s) 133
DseDI GACNNNNNNGTC 1 cut(s) 133
EaeI YGGCCR 2 cut(s) 255, 326
EagI CGGCCG 1 cut(s) 326
Eam1104I CTCTTC 4 cut(s) 29, 191, 219, 293
EarI CTCTTC 4 cut(s) 29, 191, 219, 293
EciI GGCGGA 1 cut(s) 419
EclXI CGGCCG 1 cut(s) 326
Eco31I GGTCTC 1 cut(s) 670
Eco47I GGWCC 1 cut(s) 364
Eco52I CGGCCG 1 cut(s) 326
Eco57I CTGAAG 1 cut(s) 774
EcoRII CCWGG 1 cut(s) 679
FaeI CATG 1 cut(s) 879
FaiI YATR 6 cut(s) 456, 585, 606, 723, 761, 877
FaqI GGGAC 4 cut(s) 71, 358, 465, 732
FatI CATG 1 cut(s) 875
FauI CCCGC 1 cut(s) 605
FbaI TGATCA 1 cut(s) 741
FblI GTMKAC 1 cut(s) 686
Fnu4HI GCNGC 5 cut(s) 323, 326, 345, 414, 435
Fsp4HI GCNGC 5 cut(s) 323, 326, 345, 414, 435
GluI GCNGC 5 cut(s) 323, 326, 345, 414, 435
HaeIII GGCC 3 cut(s) 257, 328, 344
HapII CCGG 5 cut(s) 100, 290, 310, 362, 812
HgaI GACGC 2 cut(s) 131, 555
Hin1II CATG 1 cut(s) 879
HincII GTYRAC 1 cut(s) 687
HindII GTYRAC 1 cut(s) 687
HindIII AAGCTT 1 cut(s) 56
HinfI GANTC 9 cut(s) 5, 219, 230, 262, 352, 515, 530, 784, 854
HpaII CCGG 5 cut(s) 100, 290, 310, 362, 812
HphI GGTGA 2 cut(s) 40, 103
Hpy166II GTNNAC 3 cut(s) 27, 424, 687
Hpy188I TCNGA 8 cut(s) 235, 267, 389, 399, 508, 627, 841, 926
Hpy188III TCNNGA 6 cut(s) 73, 100, 356, 466, 512, 905
Hpy8I GTNNAC 3 cut(s) 27, 424, 687
Hpy99I CGWCG 4 cut(s) 119, 146, 189, 691
HpyAV CCTTC 1 cut(s) 498
HpyCH4IV ACGT 3 cut(s) 78, 134, 392
HpyCH4V TGCA 1 cut(s) 83
HpyF10VI GCNNNNNNNGC 2 cut(s) 64, 410
HpyF3I CTNAG 2 cut(s) 90, 653
HpySE526I ACGT 3 cut(s) 78, 134, 392
Hsp92II CATG 1 cut(s) 879
Kpn2I TCCGGA 1 cut(s) 99
Ksp22I TGATCA 1 cut(s) 741
Kzo9I GATC 5 cut(s) 508, 540, 576, 741, 907
LmnI GCTCC 3 cut(s) 484, 641, 691
Lsp1109I GCAGC 3 cut(s) 334, 421, 425
MaeII ACGT 3 cut(s) 78, 134, 392
MaeIII GTNAC 5 cut(s) 109, 356, 662, 725, 772
MalI GATC 5 cut(s) 510, 542, 578, 743, 909
MboI GATC 5 cut(s) 508, 540, 576, 741, 907
MboII GAAGA 9 cut(s) 46, 158, 161, 208, 236, 310, 510, 513, 757
MlsI TGGCCA 1 cut(s) 257
MluCI AATT 1 cut(s) 495
MluNI TGGCCA 1 cut(s) 257
MlyI GAGTC 2 cut(s) 239, 539
MmeI TCCRAC 2 cut(s) 771, 864
Mox20I TGGCCA 1 cut(s) 257
MroI TCCGGA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 257
MseI TTAA 1 cut(s) 714
MslI CAYNNNNRTG 1 cut(s) 880
Msp20I TGGCCA 1 cut(s) 257
MspA1I CMGCKG 1 cut(s) 325
MspI CCGG 5 cut(s) 100, 290, 310, 362, 812
MspR9I CCNGG 3 cut(s) 311, 362, 681
Mva1269I GAATGC 2 cut(s) 568, 630
MvaI CCWGG 1 cut(s) 681
MvnI CGCG 1 cut(s) 125
MwoI GCNNNNNNNGC 2 cut(s) 64, 410
NciI CCSGG 2 cut(s) 311, 362
NdeII GATC 5 cut(s) 508, 540, 576, 741, 907
NlaIII CATG 1 cut(s) 879
NlaIV GGNNCC 1 cut(s) 810
NmeAIII GCCGAG 1 cut(s) 373
NmuCI GTSAC 3 cut(s) 109, 356, 662
NspV TTCGAA 2 cut(s) 524, 560
PctI GAATGC 2 cut(s) 568, 630
PfeI GAWTC 7 cut(s) 5, 219, 262, 352, 515, 784, 854
Pfl23II CGTACG 1 cut(s) 316
PflFI GACNNNGTC 1 cut(s) 362
PkrI GCNGC 5 cut(s) 324, 327, 346, 415, 436
Ple19I CGATCG 1 cut(s) 579
PleI GAGTC 2 cut(s) 238, 538
PpsI GAGTC 2 cut(s) 238, 538
PshAI GACNNNNGTC 1 cut(s) 682
Psp1406I AACGTT 2 cut(s) 78, 392
Psp6I CCWGG 1 cut(s) 679
PspGI CCWGG 1 cut(s) 679
PspLI CGTACG 1 cut(s) 316
PspN4I GGNNCC 1 cut(s) 810
PspPI GGNCC 2 cut(s) 342, 364
PsyI GACNNNGTC 1 cut(s) 362
PvuI CGATCG 1 cut(s) 579
RsaI GTAC 3 cut(s) 26, 318, 425
RsaNI GTAC 3 cut(s) 25, 317, 424
RseI CAYNNNNRTG 1 cut(s) 880
Rsr2I CGGWCCG 1 cut(s) 364
RsrII CGGWCCG 1 cut(s) 364
SalI GTCGAC 1 cut(s) 685
SaqAI TTAA 1 cut(s) 714
SatI GCNGC 5 cut(s) 323, 326, 345, 414, 435
Sau3AI GATC 5 cut(s) 508, 540, 576, 741, 907
Sau96I GGNCC 2 cut(s) 342, 364
SchI GAGTC 2 cut(s) 239, 539
ScrFI CCNGG 3 cut(s) 311, 362, 681
SetI ASST 9 cut(s) 60, 81, 137, 395, 436, 647, 682, 760, 875
SfuI TTCGAA 2 cut(s) 524, 560
SinI GGWCC 1 cut(s) 364
SmiMI CAYNNNNRTG 1 cut(s) 880
Sse9I AATT 1 cut(s) 495
SsiI CCGC 5 cut(s) 325, 345, 367, 404, 612
StyD4I CCNGG 3 cut(s) 309, 360, 679
TaiI ACGT 3 cut(s) 81, 137, 395
TaqI TCGA 7 cut(s) 222, 524, 539, 560, 575, 579, 686
TaqII GACCGA 1 cut(s) 143
TasI AATT 1 cut(s) 495
TatI WGTACW 1 cut(s) 24
TauI GCSGC 2 cut(s) 328, 347
TfiI GAWTC 7 cut(s) 5, 219, 262, 352, 515, 784, 854
Tru1I TTAA 1 cut(s) 714
Tru9I TTAA 1 cut(s) 714
TscAI CASTG 2 cut(s) 661, 757
TseFI GTSAC 3 cut(s) 109, 356, 662
TseI GCWGC 3 cut(s) 322, 413, 434
Tsp45I GTSAC 3 cut(s) 109, 356, 662
TspDTI ATGAA 2 cut(s) 714, 815
TspGWI ACGGA 4 cut(s) 44, 97, 637, 704
TspRI CASTG 2 cut(s) 661, 757
Tth111I GACNNNGTC 1 cut(s) 362
VpaK11BI GGWCC 1 cut(s) 364
XapI RAATTY 1 cut(s) 495
XmiI GTMKAC 1 cut(s) 686
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.