Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001609.1

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

133678 .. 134583

Gene Structure 906 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001609.1_g000030.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

atggattcaaactacccaaccaagtacacggagaagaggaccctcaccaagaagcttgtcaagcatttcccgaacgttgcagtccctaagattgtccggatttccgtcaccgacgaggacgcaaccgacacgtccagcgacgaagaagaacaagaccaacaacaacaacgactgacgaagagggtcatcaacgaagtgagaatcgaagaggagtccgaggctgtcagggtgttgctggccaagaatcagaagccaaagccgaagcctttgccggaggagaagaggaagttccggggcgtacggcagcggccgtggggcaaatgggccgccgagattcgtgacccggtccgcaagtcccgtgtctggctcggaacgttcgagacggcggaggaggcagcgttggtgtacgacagagctgccattcagttgaggggacataacgctctcacgaatatcatcgctcctccttccaaagttctcatttcggatcacgattcttcttcgaacgagtccagttcgatgaacaatctttcttgttcgaatgcgtccagttcgatcgaccatattgttgttatagatgagtatgattgcgggaaagagtgccagagcattcgctctccgacctctgttctctgtggtagtgacaacgagtggaggcctgggtcgacggagcaagatgaaacccatttcgttaaagactacggttactttgatggtgtgatcagttccactgaagctatattcttcggtgctacggagccgattctgttggaggacatgaacttggtgccggaaacaatgttgcgagacgatttgtccgacatttcgctggattcggttggggatttcaggtcatgtaaatggaatgtggaggatttctttcaagatcaatgtggtggtttctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

301

Amino Acids

34.08

Weight (kDa)

4.94

Isoelectric Point (pI)

58.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	787
AccI	GTMKAC	1 cut(s)	665
AccIII	TCCGGA	1 cut(s)	96
AciI	CCGC	5 cut(s)	307, 327, 349, 386, 591
AclI	AACGTT	2 cut(s)	75, 374
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	2 cut(s)	237, 308
AcuI	CTGAAG	1 cut(s)	753
AfaI	GTAC	3 cut(s)	26, 300, 407
AfiI	CCNNNNNNNGG	1 cut(s)	363
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	9, 884
AhdI	GACNNNNNGTC	1 cut(s)	814
AjiI	CACGTC	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	658
AluBI	AGCT	3 cut(s)	55, 416, 737
AluI	AGCT	3 cut(s)	55, 416, 737
Alw26I	GTCTC	2 cut(s)	374, 801
AlwI	GGATC	1 cut(s)	495
Aor13HI	TCCGGA	1 cut(s)	96
AoxI	GGCC	4 cut(s)	237, 308, 324, 656
ApeKI	GCWGC	3 cut(s)	304, 395, 416
AspS9I	GGNCC	3 cut(s)	39, 324, 346
AsuC2I	CCSGG	2 cut(s)	293, 344
AsuHPI	GGTGA	2 cut(s)	37, 100
AsuII	TTCGAA	2 cut(s)	503, 539
AvaII	GGWCC	2 cut(s)	39, 346
BalI	TGGCCA	1 cut(s)	239
BanI	GGYRCC	1 cut(s)	787
BbvI	GCAGC	3 cut(s)	316, 403, 407
BccI	CCATC	1 cut(s)	707
BceAI	ACGGC	3 cut(s)	295, 317, 399
BcgI	CGANNNNNNTGC	4 cut(s)	250, 284, 398, 432
BciT130I	CCWGG	1 cut(s)	660
BclI	TGATCA	1 cut(s)	720
BcnI	CCSGG	2 cut(s)	293, 344
BcoDI	GTCTC	2 cut(s)	374, 801
BisI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
BlsI	GCNGC	5 cut(s)	306, 309, 328, 397, 418
Bme1390I	CCNGG	3 cut(s)	293, 344, 660
Bme18I	GGWCC	2 cut(s)	39, 346
BmeRI	GACNNNNNGTC	1 cut(s)	814
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	39, 324, 346
BmiI	GGNNCC	3 cut(s)	41, 759, 789
BmrFI	CCNGG	3 cut(s)	293, 344, 660
Bpu14I	TTCGAA	2 cut(s)	503, 539
BpuMI	CCSGG	2 cut(s)	293, 344
BsaJI	CCNNGG	4 cut(s)	216, 292, 311, 659
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	1 cut(s)	363
Bse1I	ACTGG	2 cut(s)	513, 549
BseAI	TCCGGA	1 cut(s)	96
BseBI	CCWGG	1 cut(s)	660
BseDI	CCNNGG	4 cut(s)	216, 292, 311, 659
BseLI	CCNNNNNNNGG	1 cut(s)	363
BseNI	ACTGG	2 cut(s)	513, 549
BseRI	GAGGAG	4 cut(s)	224, 290, 404, 453
BseX3I	CGGCCG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	316, 403, 407
Bsh1285I	CGRYCG	2 cut(s)	311, 558
BshFI	GGCC	4 cut(s)	239, 310, 326, 658
BshNI	GGYRCC	1 cut(s)	787
BsiEI	CGRYCG	2 cut(s)	311, 558
BsiSI	CCGG	5 cut(s)	97, 272, 292, 344, 791
BsiWI	CGTACG	1 cut(s)	298
BslFI	GGGAC	3 cut(s)	68, 340, 447
BslI	CCNNNNNNNGG	1 cut(s)	363
BsmAI	GTCTC	2 cut(s)	374, 801
BsmBI	CGTCTC	2 cut(s)	374, 801
BsmFI	GGGAC	3 cut(s)	68, 340, 447
BsmI	GAATGC	2 cut(s)	547, 609
BsnI	GGCC	4 cut(s)	239, 310, 326, 658
Bsp119I	TTCGAA	2 cut(s)	503, 539
Bsp13I	TCCGGA	1 cut(s)	96
Bsp143I	GATC	4 cut(s)	487, 555, 720, 886
BspACI	CCGC	5 cut(s)	307, 327, 349, 386, 591
BspANI	GGCC	4 cut(s)	239, 310, 326, 658
BspEI	TCCGGA	1 cut(s)	96
BspLI	GGNNCC	3 cut(s)	41, 759, 789
BspPI	GGATC	1 cut(s)	495
BspT104I	TTCGAA	2 cut(s)	503, 539
BspT107I	GGYRCC	1 cut(s)	787
BsrI	ACTGG	2 cut(s)	513, 549
BssECI	CCNNGG	4 cut(s)	216, 292, 311, 659
BssMI	GATC	4 cut(s)	487, 555, 720, 886
Bst2UI	CCWGG	1 cut(s)	660
Bst4CI	ACNGT	1 cut(s)	704
Bst6I	CTCTTC	4 cut(s)	29, 173, 201, 275
BstBI	TTCGAA	2 cut(s)	503, 539
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	311
BstKTI	GATC	4 cut(s)	490, 558, 723, 889
BstMAI	GTCTC	2 cut(s)	374, 801
BstMBI	GATC	4 cut(s)	487, 555, 720, 886
BstMCI	CGRYCG	2 cut(s)	311, 558
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 392
BstNI	CCWGG	1 cut(s)	660
BstSCI	CCNGG	3 cut(s)	291, 342, 658
BstV1I	GCAGC	3 cut(s)	316, 403, 407
BstZI	CGGCCG	1 cut(s)	308
BsuRI	GGCC	4 cut(s)	239, 310, 326, 658
BtgI	CCRYGG	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	132
BtsIMutI	CAGTG	1 cut(s)	729
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	39, 324, 346
CpoI	CGGWCCG	1 cut(s)	346
CseI	GACGC	2 cut(s)	128, 534
Csp6I	GTAC	3 cut(s)	25, 299, 406
CspI	CGGWCCG	1 cut(s)	346
CviAII	CATG	2 cut(s)	778, 855
CviQI	GTAC	3 cut(s)	25, 299, 406
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	4 cut(s)	489, 557, 722, 888
DpnII	GATC	4 cut(s)	487, 555, 720, 886
DriI	GACNNNNNGTC	1 cut(s)	814
EaeI	YGGCCR	2 cut(s)	237, 308
EagI	CGGCCG	1 cut(s)	308
Eam1104I	CTCTTC	4 cut(s)	29, 173, 201, 275
Eam1105I	GACNNNNNGTC	1 cut(s)	814
EarI	CTCTTC	4 cut(s)	29, 173, 201, 275
EciI	GGCGGA	1 cut(s)	401
EclXI	CGGCCG	1 cut(s)	308
Eco147I	AGGCCT	1 cut(s)	658
Eco47I	GGWCC	2 cut(s)	39, 346
Eco52I	CGGCCG	1 cut(s)	308
Eco57I	CTGAAG	1 cut(s)	753
EcoO109I	RGGNCCY	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	658
Esp3I	CGTCTC	2 cut(s)	374, 801
FaeI	CATG	2 cut(s)	781, 858
FaiI	YATR	7 cut(s)	438, 564, 575, 585, 740, 779, 856
FaqI	GGGAC	3 cut(s)	68, 340, 447
FatI	CATG	2 cut(s)	777, 854
FauI	CCCGC	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	720
FblI	GTMKAC	1 cut(s)	665
Fnu4HI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
Fsp4HI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
GluI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
HaeIII	GGCC	4 cut(s)	239, 310, 326, 658
HapII	CCGG	5 cut(s)	97, 272, 292, 344, 791
HgaI	GACGC	2 cut(s)	128, 534
Hin1II	CATG	2 cut(s)	781, 858
HincII	GTYRAC	1 cut(s)	666
HindII	GTYRAC	1 cut(s)	666
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	9 cut(s)	5, 201, 212, 244, 334, 494, 509, 763, 833
HpaII	CCGG	5 cut(s)	97, 272, 292, 344, 791
HphI	GGTGA	2 cut(s)	37, 100
Hpy166II	GTNNAC	3 cut(s)	27, 406, 666
Hpy188I	TCNGA	7 cut(s)	217, 249, 371, 487, 621, 820, 905
Hpy188III	TCNNGA	7 cut(s)	70, 97, 338, 379, 448, 491, 884
Hpy8I	GTNNAC	3 cut(s)	27, 406, 666
Hpy99I	CGWCG	3 cut(s)	116, 143, 670
HpyAV	CCTTC	1 cut(s)	477
HpyCH4III	ACNGT	1 cut(s)	704
HpyCH4IV	ACGT	3 cut(s)	75, 131, 374
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 392
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	3 cut(s)	75, 131, 374
Hsp92II	CATG	2 cut(s)	781, 858
Kpn2I	TCCGGA	1 cut(s)	96
Ksp22I	TGATCA	1 cut(s)	720
Kzo9I	GATC	4 cut(s)	487, 555, 720, 886
LmnI	GCTCC	3 cut(s)	466, 670, 757
Lsp1109I	GCAGC	3 cut(s)	316, 403, 407
MaeII	ACGT	3 cut(s)	75, 131, 374
MaeIII	GTNAC	4 cut(s)	106, 338, 641, 704
MalI	GATC	4 cut(s)	489, 557, 722, 888
MboI	GATC	4 cut(s)	487, 555, 720, 886
MboII	GAAGA	9 cut(s)	46, 155, 158, 190, 218, 292, 489, 492, 736
MlsI	TGGCCA	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	221, 518
MmeI	TCCRAC	3 cut(s)	644, 750, 843
Mox20I	TGGCCA	1 cut(s)	239
MroI	TCCGGA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	239
MseI	TTAA	1 cut(s)	693
MslI	CAYNNNNRTG	1 cut(s)	859
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	5 cut(s)	97, 272, 292, 344, 791
MspR9I	CCNGG	3 cut(s)	293, 344, 660
Mva1269I	GAATGC	2 cut(s)	547, 609
MvaI	CCWGG	1 cut(s)	660
MwoI	GCNNNNNNNGC	2 cut(s)	61, 392
NciI	CCSGG	2 cut(s)	293, 344
NdeII	GATC	4 cut(s)	487, 555, 720, 886
NlaIII	CATG	2 cut(s)	781, 858
NlaIV	GGNNCC	3 cut(s)	41, 759, 789
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	3 cut(s)	106, 338, 641
NspV	TTCGAA	2 cut(s)	503, 539
PceI	AGGCCT	1 cut(s)	658
PcsI	WCGNNNNNNNCGW	2 cut(s)	375, 816
PctI	GAATGC	2 cut(s)	547, 609
PfeI	GAWTC	7 cut(s)	5, 201, 244, 334, 494, 763, 833
Pfl23II	CGTACG	1 cut(s)	298
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	306, 309, 328, 397, 418
Ple19I	CGATCG	1 cut(s)	558
PleI	GAGTC	2 cut(s)	220, 517
PpsI	GAGTC	2 cut(s)	220, 517
PpuMI	RGGWCCY	1 cut(s)	39
Psp1406I	AACGTT	2 cut(s)	75, 374
Psp5II	RGGWCCY	1 cut(s)	39
Psp6I	CCWGG	1 cut(s)	658
PspGI	CCWGG	1 cut(s)	658
PspLI	CGTACG	1 cut(s)	298
PspN4I	GGNNCC	3 cut(s)	41, 759, 789
PspPI	GGNCC	3 cut(s)	39, 324, 346
PspPPI	RGGWCCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	558
RsaI	GTAC	3 cut(s)	26, 300, 407
RsaNI	GTAC	3 cut(s)	25, 299, 406
RseI	CAYNNNNRTG	1 cut(s)	859
Rsr2I	CGGWCCG	1 cut(s)	346
RsrII	CGGWCCG	1 cut(s)	346
SalI	GTCGAC	1 cut(s)	664
SaqAI	TTAA	1 cut(s)	693
SatI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
Sau3AI	GATC	4 cut(s)	487, 555, 720, 886
Sau96I	GGNCC	3 cut(s)	39, 324, 346
SchI	GAGTC	2 cut(s)	221, 518
ScrFI	CCNGG	3 cut(s)	293, 344, 660
SetI	ASST	8 cut(s)	57, 78, 134, 377, 418, 626, 739, 854
SfuI	TTCGAA	2 cut(s)	503, 539
SinI	GGWCC	2 cut(s)	39, 346
SmiMI	CAYNNNNRTG	1 cut(s)	859
SseBI	AGGCCT	1 cut(s)	658
SsiI	CCGC	5 cut(s)	307, 327, 349, 386, 591
StuI	AGGCCT	1 cut(s)	658
StyD4I	CCNGG	3 cut(s)	291, 342, 658
TaaI	ACNGT	1 cut(s)	704
TaiI	ACGT	3 cut(s)	78, 134, 377
TaqI	TCGA	8 cut(s)	204, 378, 503, 518, 539, 554, 558, 665
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	2 cut(s)	310, 329
TfiI	GAWTC	7 cut(s)	5, 201, 244, 334, 494, 763, 833
Tru1I	TTAA	1 cut(s)	693
Tru9I	TTAA	1 cut(s)	693
TscAI	CASTG	1 cut(s)	736
TseFI	GTSAC	3 cut(s)	106, 338, 641
TseI	GCWGC	3 cut(s)	304, 395, 416
Tsp45I	GTSAC	3 cut(s)	106, 338, 641
TspDTI	ATGAA	3 cut(s)	536, 693, 794
TspGWI	ACGGA	4 cut(s)	44, 94, 683, 770
TspRI	CASTG	1 cut(s)	736
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	39, 346
XmiI	GTMKAC	1 cut(s)	665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.