Rw5G035980

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0006158
Physical Location & Seq
Forward (+)
62831932 .. 62832723
792 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G035980.1

Sequence Viewer

Length: 792 bp
ATGAACGAAGTGAGAATCGAAGAGGAGTCTGAGGCGGTCAGGGTGTTTCTGGCCAAGAATCAGAAGCAAAAGCCGAAGCCTTTACCGAAGGAGAAGAGGAAGTTCCAGGGCGTACGACAACGGCCGTGGGGCAAATGGGCCACCGAGATTCGTGACCCGGTCCGCAAGTCCAGTGTCTGGCTCGGAACGTTTCAGACGGCGGAGGAGGCGGCGATGGTGTACGACAGAGCTGCCATTCAGTTGAGGGGACATAACGCTCTCGCGAATATCATCGCTCCTCCTTCCAAAATTCTCATTCTGGATCACGATTCTTCTTCGAATGAGTCCAGTTCGATCAACAATCTTTCTTGTTCGAATGCGTCCAGTTCGAACTACCATATTGTTGTGATAGATGAGTATGATTCCGGGAAAGAGTGTCAGAACATTCGCTCAACAACCTCTGTTCTCAGTGGTAGTGACAACGAGTGGAGACCTGGGTCGAAGGAGCAGGATGAAACCCATTTCGTTAAAGACTATGGTTACTTTGATGGTGTGATCAGTCCCACTGAAGCTATATTCTTCGGTGTTACAGAGCCGATTCTGTTGGAGGAAATGAACTTGGTGCCGGAAACAATGTTGGTGACTTCAAATTCAAAAACCCAGCTACTAAATTTAGAGCAGAACATGTTCTCGGGTGGAGGAATGGGTGTTCAATTGGAGGGCAAGGGCGGCGTTGGAAGCGAGGGAGTGAGAAGGAAGAAGAAAGAGATAAAAACGAAGGAAAAAAAAATTATTAAAAAAAGAAAGAACTGA

Protein Analysis

263

Amino Acids

29.49

Weight (kDa)

8.89

Isoelectric Point (pI)

56.37

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 34 - 84 3.5e-13 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 601
AccB7I CCANNNNNTGG 1 cut(s) 177
AccII CGCG 1 cut(s) 263
AciI CCGC 5 cut(s) 35, 163, 200, 209, 708
AclI AACGTT 1 cut(s) 188
AclWI GGATC 1 cut(s) 309
AcoI YGGCCR 2 cut(s) 51, 122
AcsI RAATTY 3 cut(s) 288, 628, 649
AcuI CTGAAG 1 cut(s) 567
AfaI GTAC 2 cut(s) 114, 221
AfiI CCNNNNNNNGG 1 cut(s) 177
AflIII ACRYGT 1 cut(s) 663
AgsI TTSAA 3 cut(s) 627, 633, 692
AjnI CCWGG 2 cut(s) 105, 472
AloI GAACNNNNNNTCC 2 cut(s) 672, 704
AluBI AGCT 3 cut(s) 230, 551, 643
AluI AGCT 3 cut(s) 230, 551, 643
Alw26I GTCTC 1 cut(s) 463
AlwI GGATC 1 cut(s) 309
AlwNI CAGNNNCTG 1 cut(s) 177
Ama87I CYCGRG 1 cut(s) 670
AoxI GGCC 3 cut(s) 51, 122, 138
ApeKI GCWGC 1 cut(s) 230
ApoI RAATTY 3 cut(s) 288, 628, 649
Asp700I GAANNNNTTC 1 cut(s) 665
AspS9I GGNCC 2 cut(s) 138, 160
AsuC2I CCSGG 2 cut(s) 158, 406
AsuHPI GGTGA 1 cut(s) 631
AsuII TTCGAA 3 cut(s) 317, 353, 368
AvaI CYCGRG 1 cut(s) 670
AvaII GGWCC 1 cut(s) 160
BalI TGGCCA 1 cut(s) 53
BanI GGYRCC 1 cut(s) 601
BbvI GCAGC 1 cut(s) 217
BccI CCATC 2 cut(s) 208, 521
BceAI ACGGC 3 cut(s) 109, 137, 213
BcgI CGANNNNNNTGC 2 cut(s) 212, 246
BciT130I CCWGG 2 cut(s) 107, 474
BclI TGATCA 1 cut(s) 534
BcnI CCSGG 2 cut(s) 158, 406
BcoDI GTCTC 1 cut(s) 463
BisI GCNGC 3 cut(s) 210, 231, 709
BlsI GCNGC 3 cut(s) 211, 232, 710
Bme1390I CCNGG 4 cut(s) 107, 158, 406, 474
Bme18I GGWCC 1 cut(s) 160
BmeT110I CYCGRG 1 cut(s) 670
BmgT120I GGNCC 2 cut(s) 138, 160
BmiI GGNNCC 1 cut(s) 603
BmrFI CCNGG 4 cut(s) 107, 158, 406, 474
BoxI GACNNNNGTC 1 cut(s) 475
Bpu14I TTCGAA 3 cut(s) 317, 353, 368
BpuMI CCSGG 2 cut(s) 158, 406
BsaI GGTCTC 1 cut(s) 463
BsaJI CCNNGG 3 cut(s) 106, 125, 473
Bsc4I CCNNNNNNNGG 1 cut(s) 177
Bse1I ACTGG 3 cut(s) 171, 327, 363
BseBI CCWGG 2 cut(s) 107, 474
BseDI CCNNGG 3 cut(s) 106, 125, 473
BseGI GGATG 1 cut(s) 496
BseLI CCNNNNNNNGG 1 cut(s) 177
BseMII CTCAG 2 cut(s) 21, 460
BseNI ACTGG 3 cut(s) 171, 327, 363
BseRI GAGGAG 3 cut(s) 38, 218, 267
BseX3I CGGCCG 1 cut(s) 122
BseXI GCAGC 1 cut(s) 217
BseYI CCCAGC 1 cut(s) 639
Bsh1236I CGCG 1 cut(s) 263
Bsh1285I CGRYCG 1 cut(s) 125
BshFI GGCC 3 cut(s) 53, 124, 140
BshNI GGYRCC 1 cut(s) 601
BsiEI CGRYCG 1 cut(s) 125
BsiHKCI CYCGRG 1 cut(s) 670
BsiSI CCGG 3 cut(s) 158, 405, 605
BsiWI CGTACG 1 cut(s) 112
BslFI GGGAC 2 cut(s) 261, 525
BslI CCNNNNNNNGG 1 cut(s) 177
BsmAI GTCTC 1 cut(s) 463
BsmFI GGGAC 2 cut(s) 261, 525
BsmI GAATGC 1 cut(s) 361
BsnI GGCC 3 cut(s) 53, 124, 140
Bso31I GGTCTC 1 cut(s) 463
BsoBI CYCGRG 1 cut(s) 670
Bsp119I TTCGAA 3 cut(s) 317, 353, 368
Bsp143I GATC 3 cut(s) 301, 333, 534
Bsp68I TCGCGA 1 cut(s) 263
BspACI CCGC 5 cut(s) 35, 163, 200, 209, 708
BspANI GGCC 3 cut(s) 53, 124, 140
BspCNI CTCAG 2 cut(s) 22, 459
BspFNI CGCG 1 cut(s) 263
BspLI GGNNCC 1 cut(s) 603
BspPI GGATC 1 cut(s) 309
BspT104I TTCGAA 3 cut(s) 317, 353, 368
BspT107I GGYRCC 1 cut(s) 601
BspTNI GGTCTC 1 cut(s) 463
BsrI ACTGG 3 cut(s) 171, 327, 363
BssECI CCNNGG 3 cut(s) 106, 125, 473
BssMI GATC 3 cut(s) 301, 333, 534
Bst2UI CCWGG 2 cut(s) 107, 474
Bst6I CTCTTC 2 cut(s) 15, 89
BstBI TTCGAA 3 cut(s) 317, 353, 368
BstDEI CTNAG 2 cut(s) 30, 446
BstDSI CCRYGG 1 cut(s) 125
BstF5I GGATG 1 cut(s) 496
BstFNI CGCG 1 cut(s) 263
BstKTI GATC 3 cut(s) 304, 336, 537
BstMAI GTCTC 1 cut(s) 463
BstMBI GATC 3 cut(s) 301, 333, 534
BstMCI CGRYCG 1 cut(s) 125
BstMWI GCNNNNNNNGC 3 cut(s) 206, 708, 717
BstNI CCWGG 2 cut(s) 107, 474
BstNSI RCATGY 1 cut(s) 667
BstPAI GACNNNNGTC 1 cut(s) 475
BstSCI CCNGG 4 cut(s) 105, 156, 404, 472
BstUI CGCG 1 cut(s) 263
BstV1I GCAGC 1 cut(s) 217
BstZI CGGCCG 1 cut(s) 122
BsuRI GGCC 3 cut(s) 53, 124, 140
BtgI CCRYGG 1 cut(s) 125
BtgZI GCGATG 2 cut(s) 227, 256
BtsCI GGATG 1 cut(s) 496
BtsIMutI CAGTG 3 cut(s) 178, 454, 543
BtuMI TCGCGA 1 cut(s) 263
CaiI CAGNNNCTG 1 cut(s) 177
Cfr13I GGNCC 2 cut(s) 138, 160
CpoI CGGWCCG 1 cut(s) 160
CseI GACGC 1 cut(s) 348
Csp6I GTAC 2 cut(s) 113, 220
CspCI CAANNNNNGTGG 2 cut(s) 107, 142
CspI CGGWCCG 1 cut(s) 160
CviAII CATG 1 cut(s) 664
CviQI GTAC 2 cut(s) 113, 220
DdeI CTNAG 2 cut(s) 30, 446
DpnI GATC 3 cut(s) 303, 335, 536
DpnII GATC 3 cut(s) 301, 333, 534
EaeI YGGCCR 2 cut(s) 51, 122
EagI CGGCCG 1 cut(s) 122
Eam1104I CTCTTC 2 cut(s) 15, 89
EarI CTCTTC 2 cut(s) 15, 89
EciI GGCGGA 1 cut(s) 215
EclXI CGGCCG 1 cut(s) 122
Eco31I GGTCTC 1 cut(s) 463
Eco47I GGWCC 1 cut(s) 160
Eco52I CGGCCG 1 cut(s) 122
Eco57I CTGAAG 1 cut(s) 567
Eco88I CYCGRG 1 cut(s) 670
EcoRII CCWGG 2 cut(s) 105, 472
FaeI CATG 1 cut(s) 667
FaiI YATR 6 cut(s) 252, 378, 399, 516, 554, 665
FaqI GGGAC 2 cut(s) 261, 525
FatI CATG 1 cut(s) 663
FbaI TGATCA 1 cut(s) 534
Fnu4HI GCNGC 3 cut(s) 210, 231, 709
FokI GGATG 1 cut(s) 503
Fsp4HI GCNGC 3 cut(s) 210, 231, 709
GluI GCNGC 3 cut(s) 210, 231, 709
GsaI CCCAGC 1 cut(s) 643
HaeIII GGCC 3 cut(s) 53, 124, 140
HapII CCGG 3 cut(s) 158, 405, 605
HgaI GACGC 1 cut(s) 348
Hin1II CATG 1 cut(s) 667
HinfI GANTC 8 cut(s) 15, 26, 58, 148, 308, 323, 401, 577
HpaII CCGG 3 cut(s) 158, 405, 605
HphI GGTGA 1 cut(s) 631
Hpy166II GTNNAC 1 cut(s) 220
Hpy188I TCNGA 5 cut(s) 31, 63, 185, 195, 420
Hpy188III TCNNGA 4 cut(s) 152, 262, 299, 305
Hpy8I GTNNAC 1 cut(s) 220
HpyAV CCTTC 5 cut(s) 82, 291, 475, 726, 751
HpyCH4IV ACGT 1 cut(s) 188
HpyF10VI GCNNNNNNNGC 3 cut(s) 206, 708, 717
HpyF3I CTNAG 2 cut(s) 30, 446
HpySE526I ACGT 1 cut(s) 188
Hsp92II CATG 1 cut(s) 667
Ksp22I TGATCA 1 cut(s) 534
Kzo9I GATC 3 cut(s) 301, 333, 534
LmnI GCTCC 2 cut(s) 280, 484
Lsp1109I GCAGC 1 cut(s) 217
MaeII ACGT 1 cut(s) 188
MaeIII GTNAC 5 cut(s) 152, 455, 518, 565, 619
MalI GATC 3 cut(s) 303, 335, 536
MboI GATC 3 cut(s) 301, 333, 534
MboII GAAGA 7 cut(s) 32, 106, 303, 306, 550, 748, 751
MfeI CAATTG 1 cut(s) 692
MlsI TGGCCA 1 cut(s) 53
MluCI AATT 5 cut(s) 288, 628, 649, 692, 768
MluNI TGGCCA 1 cut(s) 53
MlyI GAGTC 2 cut(s) 35, 332
MmeI TCCRAC 2 cut(s) 564, 694
Mox20I TGGCCA 1 cut(s) 53
MroXI GAANNNNTTC 1 cut(s) 665
MscI TGGCCA 1 cut(s) 53
MseI TTAA 2 cut(s) 507, 774
Msp20I TGGCCA 1 cut(s) 53
MspI CCGG 3 cut(s) 158, 405, 605
MspR9I CCNGG 4 cut(s) 107, 158, 406, 474
MunI CAATTG 1 cut(s) 692
Mva1269I GAATGC 1 cut(s) 361
MvaI CCWGG 2 cut(s) 107, 474
MvnI CGCG 1 cut(s) 263
MwoI GCNNNNNNNGC 3 cut(s) 206, 708, 717
NciI CCSGG 2 cut(s) 158, 406
NdeII GATC 3 cut(s) 301, 333, 534
NlaIII CATG 1 cut(s) 667
NlaIV GGNNCC 1 cut(s) 603
NmuCI GTSAC 3 cut(s) 152, 455, 619
NruI TCGCGA 1 cut(s) 263
NspI RCATGY 1 cut(s) 667
NspV TTCGAA 3 cut(s) 317, 353, 368
PciI ACATGT 1 cut(s) 663
PctI GAATGC 1 cut(s) 361
PdmI GAANNNNTTC 1 cut(s) 665
PfeI GAWTC 6 cut(s) 15, 58, 148, 308, 401, 577
Pfl23II CGTACG 1 cut(s) 112
PflFI GACNNNGTC 1 cut(s) 158
PflMI CCANNNNNTGG 1 cut(s) 177
PfoI TCCNGGA 1 cut(s) 404
PkrI GCNGC 3 cut(s) 211, 232, 710
PleI GAGTC 2 cut(s) 34, 331
PpsI GAGTC 2 cut(s) 34, 331
PscI ACATGT 1 cut(s) 663
PshAI GACNNNNGTC 1 cut(s) 475
Psp1406I AACGTT 1 cut(s) 188
Psp6I CCWGG 2 cut(s) 105, 472
PspFI CCCAGC 1 cut(s) 639
PspGI CCWGG 2 cut(s) 105, 472
PspLI CGTACG 1 cut(s) 112
PspN4I GGNNCC 1 cut(s) 603
PspPI GGNCC 2 cut(s) 138, 160
PstNI CAGNNNCTG 1 cut(s) 177
PsyI GACNNNGTC 1 cut(s) 158
RruI TCGCGA 1 cut(s) 263
RsaI GTAC 2 cut(s) 114, 221
RsaNI GTAC 2 cut(s) 113, 220
Rsr2I CGGWCCG 1 cut(s) 160
RsrII CGGWCCG 1 cut(s) 160
SaqAI TTAA 2 cut(s) 507, 774
SatI GCNGC 3 cut(s) 210, 231, 709
Sau3AI GATC 3 cut(s) 301, 333, 534
Sau96I GGNCC 2 cut(s) 138, 160
SchI GAGTC 2 cut(s) 35, 332
ScrFI CCNGG 4 cut(s) 107, 158, 406, 474
SetI ASST 6 cut(s) 191, 232, 440, 475, 553, 645
SfuI TTCGAA 3 cut(s) 317, 353, 368
SinI GGWCC 1 cut(s) 160
Sse9I AATT 5 cut(s) 288, 628, 649, 692, 768
SsiI CCGC 5 cut(s) 35, 163, 200, 209, 708
StyD4I CCNGG 4 cut(s) 105, 156, 404, 472
TaiI ACGT 1 cut(s) 191
TaqI TCGA 6 cut(s) 18, 317, 332, 353, 368, 479
TasI AATT 5 cut(s) 288, 628, 649, 692, 768
TauI GCSGC 2 cut(s) 212, 711
TfiI GAWTC 6 cut(s) 15, 58, 148, 308, 401, 577
Tru1I TTAA 2 cut(s) 507, 774
Tru9I TTAA 2 cut(s) 507, 774
TscAI CASTG 3 cut(s) 178, 454, 550
TseFI GTSAC 3 cut(s) 152, 455, 619
TseI GCWGC 1 cut(s) 230
Tsp45I GTSAC 3 cut(s) 152, 455, 619
TspDTI ATGAA 3 cut(s) 17, 507, 608
TspRI CASTG 3 cut(s) 178, 454, 550
Tth111I GACNNNGTC 1 cut(s) 158
Van91I CCANNNNNTGG 1 cut(s) 177
VpaK11BI GGWCC 1 cut(s) 160
XapI RAATTY 3 cut(s) 288, 628, 649
XceI RCATGY 1 cut(s) 667
XmnI GAANNNNTTC 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.