Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Reverse (-)

17593211 .. 17594665

Gene Structure 1455 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00297710.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 912 bp

ATGGATTCAAACTACCCAACCAAGTACACGGAGAAGAGAACCCTCACCAAGAAGCTTGTCAAGCATTTCCCGAACGTTGCAGTCCCTAAGATTGTCAGGATTTCCGTCACCGACGAGGACGCAACCGACACGTCCAGCGACGAAGAAGAACAAGACCAACAACAACAACAACAACGACTGACGAAGAGGATCATCAACGAAGTGAGAATCGAAGAGGAGTCCGAGGCTGTCAGGGTGTTTCTGGCCAAGAATCAGAAGCAAAAGCCGAAGCCTTCACCGGAGGAGAAGAGGAAGTTCCGGGGCGTACGGCAGCGGCCGTGGGGCAAATGGGCCGCCGAGATTCGTGACCCGGTCCGCAAGTCCCGTGTCTGGCTCGGAACGTTTCAGACGGCGGAGGAGGCAGCGTTGGTGTACGACAGAGCTGCCATTCAGTTGAGGGGACATAACGCTCTCACGAATATCATCGCTCCTCCTTCTAAAATTCTCATTTCGGATCACGATTCTTCTTCGAATGAGTCCAGTTCGATCAACGATCTTTCTTGTTCGAATGTGTCCAGTTCGATCGACAATATTGTTGTGATAGATGAGTATGATTGCGGGAAAGAGTGTCAGAGCATTCGCTCCCCGACCTCTGTTCTCAGTGGTAGTGACAACGAGTGGAGACCTGGGTCGAAGGAGCAAGATGAAACCCATTTCGTTAAAGACTATGGTTACTTTGATGGTGTGATCAGTCCCACTGAAGCTATATTCTTCGGTGTTACAGAGCCGATTCTGTTGGAGGAAATGAACTTGGTGCCGGAAACAATGTTGCGAGACGATTTGTCCGACATTTCGCTGGATTCGGTTGGGGATTTCAGGTCATGTAAATGGAATGTGGAGGATTTCTTTCAAGATCAATGTGGTGGTTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

303

Amino Acids

34.46

Weight (kDa)

4.95

Isoelectric Point (pI)

63.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	98 - 148	4.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	793
AciI	CCGC	5 cut(s)	313, 333, 355, 392, 597
AclI	AACGTT	2 cut(s)	75, 380
AclWI	GGATC	2 cut(s)	197, 501
AcoI	YGGCCR	2 cut(s)	243, 314
AcsI	RAATTY	1 cut(s)	480
AcuI	CTGAAG	1 cut(s)	759
AfaI	GTAC	3 cut(s)	26, 306, 413
AfiI	CCNNNNNNNGG	1 cut(s)	369
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	2 cut(s)	9, 890
AhdI	GACNNNNNGTC	1 cut(s)	820
AjiI	CACGTC	1 cut(s)	132
AjnI	CCWGG	1 cut(s)	664
AluBI	AGCT	3 cut(s)	55, 422, 743
AluI	AGCT	3 cut(s)	55, 422, 743
Alw26I	GTCTC	2 cut(s)	655, 807
AlwI	GGATC	2 cut(s)	197, 501
AoxI	GGCC	3 cut(s)	243, 314, 330
ApeKI	GCWGC	3 cut(s)	310, 401, 422
ApoI	RAATTY	1 cut(s)	480
AspS9I	GGNCC	2 cut(s)	330, 352
AsuC2I	CCSGG	2 cut(s)	299, 350
AsuHPI	GGTGA	3 cut(s)	37, 100, 267
AsuII	TTCGAA	2 cut(s)	509, 545
AvaII	GGWCC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	793
BbvI	GCAGC	3 cut(s)	322, 409, 413
BccI	CCATC	1 cut(s)	713
BceAI	ACGGC	3 cut(s)	301, 323, 405
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BciT130I	CCWGG	1 cut(s)	666
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	2 cut(s)	299, 350
BcoDI	GTCTC	2 cut(s)	655, 807
BisI	GCNGC	5 cut(s)	311, 314, 333, 402, 423
BlsI	GCNGC	5 cut(s)	312, 315, 334, 403, 424
Bme1390I	CCNGG	3 cut(s)	299, 350, 666
Bme18I	GGWCC	1 cut(s)	352
BmeRI	GACNNNNNGTC	1 cut(s)	820
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	2 cut(s)	330, 352
BmiI	GGNNCC	1 cut(s)	795
BmrFI	CCNGG	3 cut(s)	299, 350, 666
BoxI	GACNNNNGTC	1 cut(s)	667
Bpu14I	TTCGAA	2 cut(s)	509, 545
BpuMI	CCSGG	2 cut(s)	299, 350
BsaI	GGTCTC	1 cut(s)	655
BsaJI	CCNNGG	4 cut(s)	222, 298, 317, 665
BsaWI	WCCGGW	1 cut(s)	277
BsaXI	ACNNNNNCTCC	2 cut(s)	389, 419
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse1I	ACTGG	2 cut(s)	519, 555
BseBI	CCWGG	1 cut(s)	666
BseDI	CCNNGG	4 cut(s)	222, 298, 317, 665
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseMII	CTCAG	1 cut(s)	652
BseNI	ACTGG	2 cut(s)	519, 555
BseRI	GAGGAG	4 cut(s)	230, 296, 410, 459
BseX3I	CGGCCG	1 cut(s)	314
BseXI	GCAGC	3 cut(s)	322, 409, 413
Bsh1285I	CGRYCG	2 cut(s)	317, 564
BshFI	GGCC	3 cut(s)	245, 316, 332
BshNI	GGYRCC	1 cut(s)	793
BsiEI	CGRYCG	2 cut(s)	317, 564
BsiSI	CCGG	4 cut(s)	278, 298, 350, 797
BsiWI	CGTACG	1 cut(s)	304
BslFI	GGGAC	4 cut(s)	68, 346, 453, 717
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	2 cut(s)	655, 807
BsmBI	CGTCTC	1 cut(s)	807
BsmFI	GGGAC	4 cut(s)	68, 346, 453, 717
BsmI	GAATGC	1 cut(s)	615
BsnI	GGCC	3 cut(s)	245, 316, 332
Bso31I	GGTCTC	1 cut(s)	655
Bsp119I	TTCGAA	2 cut(s)	509, 545
Bsp143I	GATC	7 cut(s)	189, 493, 525, 532, 561, 726, 892
BspACI	CCGC	5 cut(s)	313, 333, 355, 392, 597
BspANI	GGCC	3 cut(s)	245, 316, 332
BspCNI	CTCAG	1 cut(s)	651
BspLI	GGNNCC	1 cut(s)	795
BspPI	GGATC	2 cut(s)	197, 501
BspT104I	TTCGAA	2 cut(s)	509, 545
BspT107I	GGYRCC	1 cut(s)	793
BspTNI	GGTCTC	1 cut(s)	655
BsrI	ACTGG	2 cut(s)	519, 555
BssECI	CCNNGG	4 cut(s)	222, 298, 317, 665
BssMI	GATC	7 cut(s)	189, 493, 525, 532, 561, 726, 892
Bst2UI	CCWGG	1 cut(s)	666
Bst6I	CTCTTC	4 cut(s)	29, 179, 207, 281
BstBI	TTCGAA	2 cut(s)	509, 545
BstDEI	CTNAG	2 cut(s)	87, 638
BstDSI	CCRYGG	1 cut(s)	317
BstKTI	GATC	7 cut(s)	192, 496, 528, 535, 564, 729, 895
BstMAI	GTCTC	2 cut(s)	655, 807
BstMBI	GATC	7 cut(s)	189, 493, 525, 532, 561, 726, 892
BstMCI	CGRYCG	2 cut(s)	317, 564
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 398
BstNI	CCWGG	1 cut(s)	666
BstPAI	GACNNNNGTC	1 cut(s)	667
BstSCI	CCNGG	3 cut(s)	297, 348, 664
BstV1I	GCAGC	3 cut(s)	322, 409, 413
BstZI	CGGCCG	1 cut(s)	314
BsuRI	GGCC	3 cut(s)	245, 316, 332
BtgI	CCRYGG	1 cut(s)	317
BtgZI	GCGATG	1 cut(s)	448
BtrI	CACGTC	1 cut(s)	132
BtsIMutI	CAGTG	2 cut(s)	646, 735
Cfr13I	GGNCC	2 cut(s)	330, 352
CpoI	CGGWCCG	1 cut(s)	352
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	3 cut(s)	25, 305, 412
CspI	CGGWCCG	1 cut(s)	352
CviAII	CATG	1 cut(s)	861
CviQI	GTAC	3 cut(s)	25, 305, 412
DdeI	CTNAG	2 cut(s)	87, 638
DpnI	GATC	7 cut(s)	191, 495, 527, 534, 563, 728, 894
DpnII	GATC	7 cut(s)	189, 493, 525, 532, 561, 726, 892
DriI	GACNNNNNGTC	1 cut(s)	820
EaeI	YGGCCR	2 cut(s)	243, 314
EagI	CGGCCG	1 cut(s)	314
Eam1104I	CTCTTC	4 cut(s)	29, 179, 207, 281
Eam1105I	GACNNNNNGTC	1 cut(s)	820
EarI	CTCTTC	4 cut(s)	29, 179, 207, 281
EciI	GGCGGA	1 cut(s)	407
EclXI	CGGCCG	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	655
Eco47I	GGWCC	1 cut(s)	352
Eco52I	CGGCCG	1 cut(s)	314
Eco57I	CTGAAG	1 cut(s)	759
EcoRII	CCWGG	1 cut(s)	664
Esp3I	CGTCTC	1 cut(s)	807
FaeI	CATG	1 cut(s)	864
FaiI	YATR	5 cut(s)	444, 591, 708, 746, 862
FaqI	GGGAC	4 cut(s)	68, 346, 453, 717
FatI	CATG	1 cut(s)	860
FauI	CCCGC	1 cut(s)	590
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	5 cut(s)	311, 314, 333, 402, 423
Fsp4HI	GCNGC	5 cut(s)	311, 314, 333, 402, 423
GluI	GCNGC	5 cut(s)	311, 314, 333, 402, 423
HaeIII	GGCC	3 cut(s)	245, 316, 332
HapII	CCGG	4 cut(s)	278, 298, 350, 797
HgaI	GACGC	1 cut(s)	128
Hin1II	CATG	1 cut(s)	864
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	9 cut(s)	5, 207, 218, 250, 340, 500, 515, 769, 839
HpaII	CCGG	4 cut(s)	278, 298, 350, 797
HphI	GGTGA	3 cut(s)	37, 100, 267
Hpy166II	GTNNAC	2 cut(s)	27, 412
Hpy188I	TCNGA	8 cut(s)	223, 255, 377, 387, 493, 612, 826, 911
Hpy188III	TCNNGA	6 cut(s)	70, 97, 344, 454, 497, 890
Hpy8I	GTNNAC	2 cut(s)	27, 412
Hpy99I	CGWCG	2 cut(s)	116, 143
HpyAV	CCTTC	3 cut(s)	282, 483, 667
HpyCH4IV	ACGT	3 cut(s)	75, 131, 380
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 398
HpyF3I	CTNAG	2 cut(s)	87, 638
HpySE526I	ACGT	3 cut(s)	75, 131, 380
Hsp92II	CATG	1 cut(s)	864
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	7 cut(s)	189, 493, 525, 532, 561, 726, 892
LmnI	GCTCC	3 cut(s)	472, 626, 676
Lsp1109I	GCAGC	3 cut(s)	322, 409, 413
MaeII	ACGT	3 cut(s)	75, 131, 380
MaeIII	GTNAC	5 cut(s)	106, 344, 647, 710, 757
MalI	GATC	7 cut(s)	191, 495, 527, 534, 563, 728, 894
MboI	GATC	7 cut(s)	189, 493, 525, 532, 561, 726, 892
MboII	GAAGA	9 cut(s)	46, 155, 158, 196, 224, 298, 495, 498, 742
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	1 cut(s)	480
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	2 cut(s)	227, 524
MmeI	TCCRAC	2 cut(s)	756, 849
Mox20I	TGGCCA	1 cut(s)	245
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	699
MslI	CAYNNNNRTG	1 cut(s)	865
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	1 cut(s)	313
MspI	CCGG	4 cut(s)	278, 298, 350, 797
MspR9I	CCNGG	3 cut(s)	299, 350, 666
Mva1269I	GAATGC	1 cut(s)	615
MvaI	CCWGG	1 cut(s)	666
MwoI	GCNNNNNNNGC	2 cut(s)	61, 398
NciI	CCSGG	2 cut(s)	299, 350
NdeII	GATC	7 cut(s)	189, 493, 525, 532, 561, 726, 892
NlaIII	CATG	1 cut(s)	864
NlaIV	GGNNCC	1 cut(s)	795
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	3 cut(s)	106, 344, 647
NspV	TTCGAA	2 cut(s)	509, 545
PcsI	WCGNNNNNNNCGW	1 cut(s)	822
PctI	GAATGC	1 cut(s)	615
PfeI	GAWTC	7 cut(s)	5, 207, 250, 340, 500, 769, 839
Pfl23II	CGTACG	1 cut(s)	304
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	5 cut(s)	312, 315, 334, 403, 424
Ple19I	CGATCG	1 cut(s)	564
PleI	GAGTC	2 cut(s)	226, 523
PpsI	GAGTC	2 cut(s)	226, 523
PshAI	GACNNNNGTC	1 cut(s)	667
Psp1406I	AACGTT	2 cut(s)	75, 380
Psp6I	CCWGG	1 cut(s)	664
PspGI	CCWGG	1 cut(s)	664
PspLI	CGTACG	1 cut(s)	304
PspN4I	GGNNCC	1 cut(s)	795
PspPI	GGNCC	2 cut(s)	330, 352
PsyI	GACNNNGTC	1 cut(s)	350
PvuI	CGATCG	1 cut(s)	564
RsaI	GTAC	3 cut(s)	26, 306, 413
RsaNI	GTAC	3 cut(s)	25, 305, 412
RseI	CAYNNNNRTG	1 cut(s)	865
Rsr2I	CGGWCCG	1 cut(s)	352
RsrII	CGGWCCG	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	5 cut(s)	311, 314, 333, 402, 423
Sau3AI	GATC	7 cut(s)	189, 493, 525, 532, 561, 726, 892
Sau96I	GGNCC	2 cut(s)	330, 352
SchI	GAGTC	2 cut(s)	227, 524
ScrFI	CCNGG	3 cut(s)	299, 350, 666
SetI	ASST	9 cut(s)	57, 78, 134, 383, 424, 632, 667, 745, 860
SfuI	TTCGAA	2 cut(s)	509, 545
SinI	GGWCC	1 cut(s)	352
SmiMI	CAYNNNNRTG	1 cut(s)	865
Sse9I	AATT	1 cut(s)	480
SsiI	CCGC	5 cut(s)	313, 333, 355, 392, 597
SspI	AATATT	1 cut(s)	571
StyD4I	CCNGG	3 cut(s)	297, 348, 664
TaiI	ACGT	3 cut(s)	78, 134, 383
TaqI	TCGA	7 cut(s)	210, 509, 524, 545, 560, 564, 671
TasI	AATT	1 cut(s)	480
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	2 cut(s)	316, 335
TfiI	GAWTC	7 cut(s)	5, 207, 250, 340, 500, 769, 839
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	2 cut(s)	646, 742
TseFI	GTSAC	3 cut(s)	106, 344, 647
TseI	GCWGC	3 cut(s)	310, 401, 422
Tsp45I	GTSAC	3 cut(s)	106, 344, 647
TspDTI	ATGAA	2 cut(s)	699, 800
TspGWI	ACGGA	2 cut(s)	44, 94
TspRI	CASTG	2 cut(s)	646, 742
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.