Rw1G024730

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr1
OG0006158
Physical Location & Seq
Forward (+)
51108960 .. 51110071
1112 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw1G024730.1

Sequence Viewer

Length: 855 bp
ATGGATTCAAACTACCCAACCAAGTACACGGAGAAGAGGACCCTCACCAAGAAGCTTGTCAAGCATTTCCCGAACGTTGCAGTCCCTAAGATTGTCCGGATTTCCGTCACCGACGAGGACGCAACCGACACGGTCATCAACGAAGTGAGAATCGAAGAGGAGTCCGAGGCTGTCAGGGTGTTGCTGGCCAAGAATCAGAAGCCAAAGCCGAAGCCTTTGCCGGAGGAGAAGAGGAAGTTCCGGGGCGTACGGCAGCGGCCGTGGGGCAAATGGGCCGCCGAGATTCGTGACCCGGTCCGCAAGTCCCGTGTCTGGCTCGGAACGTTCCAGACGGCGGAGGAGGCAGCGTTGGTGTACGACAGAGCTGCCATTCAGTTGAGGGGACATAACGCTCTCACGAATATCATCGCTCCTCCTTCCAAAGTTCTCATTTCGGATCACGATTCTTCTTCGAATGAGTCCAGTTCGATCAACAATCTTTCTTGTTCGAATGCGTCCAGTTCGATCGACCATATTGTTGTGATAGATGAGTATGATTGCGGGAAAGAGTGCCAGAGCATTCGCTCCCCGACCTCTGTTCTCAGTGGTAGTGACAACGAGTGGAGGCCTGGGTCGACGGAGCAAGATGAAACCCATTTCGTTAAAGACTATGGTTACTTTGATGGTGTGATCAGTACCACTGAAGCTATATTCTTCGGTGTTACGGAGCCGATTCTGTTGGAGGACATGAACTTGGTGCCGGAAACAATGTTGCGAGACGATTTGTCCGACATTTCGCTGGATTCGGTTGGGGATTTCAGGTCATGTAAATGGAATGTGGAGGATTTCTTTCAAGATCAATGTGGTGGTTTCTGA

Protein Analysis

284

Amino Acids

32.0

Weight (kDa)

5.06

Isoelectric Point (pI)

53.35

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 79 - 129 4.2e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 736
AccI GTMKAC 1 cut(s) 614
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 5 cut(s) 256, 276, 298, 335, 540
AclI AACGTT 2 cut(s) 75, 323
AclWI GGATC 1 cut(s) 444
AcoI YGGCCR 2 cut(s) 186, 257
AcuI CTGAAG 1 cut(s) 702
AfaI GTAC 4 cut(s) 26, 249, 356, 676
AfiI CCNNNNNNNGG 2 cut(s) 312, 334
AgsI TTSAA 2 cut(s) 9, 833
AhdI GACNNNNNGTC 1 cut(s) 763
AjnI CCWGG 1 cut(s) 607
AluBI AGCT 3 cut(s) 55, 365, 686
AluI AGCT 3 cut(s) 55, 365, 686
Alw26I GTCTC 1 cut(s) 750
AlwI GGATC 1 cut(s) 444
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 4 cut(s) 186, 257, 273, 605
ApeKI GCWGC 3 cut(s) 253, 344, 365
AspS9I GGNCC 3 cut(s) 39, 273, 295
AsuC2I CCSGG 2 cut(s) 242, 293
AsuHPI GGTGA 2 cut(s) 37, 100
AsuII TTCGAA 2 cut(s) 452, 488
AvaII GGWCC 2 cut(s) 39, 295
BalI TGGCCA 1 cut(s) 188
BanI GGYRCC 1 cut(s) 736
BbvI GCAGC 3 cut(s) 265, 352, 356
BccI CCATC 1 cut(s) 656
BceAI ACGGC 3 cut(s) 244, 266, 348
BcgI CGANNNNNNTGC 4 cut(s) 199, 233, 347, 381
BciT130I CCWGG 1 cut(s) 609
BclI TGATCA 1 cut(s) 669
BcnI CCSGG 2 cut(s) 242, 293
BcoDI GTCTC 1 cut(s) 750
BisI GCNGC 5 cut(s) 254, 257, 276, 345, 366
BlsI GCNGC 5 cut(s) 255, 258, 277, 346, 367
Bme1390I CCNGG 3 cut(s) 242, 293, 609
Bme18I GGWCC 2 cut(s) 39, 295
BmeRI GACNNNNNGTC 1 cut(s) 763
BmgT120I GGNCC 3 cut(s) 39, 273, 295
BmiI GGNNCC 3 cut(s) 41, 708, 738
BmrFI CCNGG 3 cut(s) 242, 293, 609
Bpu14I TTCGAA 2 cut(s) 452, 488
BpuMI CCSGG 2 cut(s) 242, 293
BsaJI CCNNGG 4 cut(s) 165, 241, 260, 608
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 332, 362
Bsc4I CCNNNNNNNGG 2 cut(s) 312, 334
Bse1I ACTGG 2 cut(s) 462, 498
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 1 cut(s) 609
BseDI CCNNGG 4 cut(s) 165, 241, 260, 608
BseLI CCNNNNNNNGG 2 cut(s) 312, 334
BseMII CTCAG 1 cut(s) 595
BseNI ACTGG 2 cut(s) 462, 498
BseRI GAGGAG 4 cut(s) 173, 239, 353, 402
BseX3I CGGCCG 1 cut(s) 257
BseXI GCAGC 3 cut(s) 265, 352, 356
Bsh1285I CGRYCG 2 cut(s) 260, 507
BshFI GGCC 4 cut(s) 188, 259, 275, 607
BshNI GGYRCC 1 cut(s) 736
BsiEI CGRYCG 2 cut(s) 260, 507
BsiSI CCGG 5 cut(s) 97, 221, 241, 293, 740
BsiWI CGTACG 1 cut(s) 247
BslFI GGGAC 3 cut(s) 68, 289, 396
BslI CCNNNNNNNGG 2 cut(s) 312, 334
BsmAI GTCTC 1 cut(s) 750
BsmBI CGTCTC 1 cut(s) 750
BsmFI GGGAC 3 cut(s) 68, 289, 396
BsmI GAATGC 2 cut(s) 496, 558
BsnI GGCC 4 cut(s) 188, 259, 275, 607
Bsp119I TTCGAA 2 cut(s) 452, 488
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 5 cut(s) 436, 468, 504, 669, 835
BspACI CCGC 5 cut(s) 256, 276, 298, 335, 540
BspANI GGCC 4 cut(s) 188, 259, 275, 607
BspCNI CTCAG 1 cut(s) 594
BspEI TCCGGA 1 cut(s) 96
BspLI GGNNCC 3 cut(s) 41, 708, 738
BspPI GGATC 1 cut(s) 444
BspT104I TTCGAA 2 cut(s) 452, 488
BspT107I GGYRCC 1 cut(s) 736
BsrI ACTGG 2 cut(s) 462, 498
BssECI CCNNGG 4 cut(s) 165, 241, 260, 608
BssMI GATC 5 cut(s) 436, 468, 504, 669, 835
Bst2UI CCWGG 1 cut(s) 609
Bst4CI ACNGT 1 cut(s) 133
Bst6I CTCTTC 3 cut(s) 29, 150, 224
BstBI TTCGAA 2 cut(s) 452, 488
BstC8I GCNNGC 1 cut(s) 186
BstDEI CTNAG 2 cut(s) 87, 581
BstDSI CCRYGG 1 cut(s) 260
BstKTI GATC 5 cut(s) 439, 471, 507, 672, 838
BstMAI GTCTC 1 cut(s) 750
BstMBI GATC 5 cut(s) 436, 468, 504, 669, 835
BstMCI CGRYCG 2 cut(s) 260, 507
BstMWI GCNNNNNNNGC 2 cut(s) 61, 341
BstNI CCWGG 1 cut(s) 609
BstSCI CCNGG 3 cut(s) 240, 291, 607
BstV1I GCAGC 3 cut(s) 265, 352, 356
BstZI CGGCCG 1 cut(s) 257
BsuRI GGCC 4 cut(s) 188, 259, 275, 607
BtgI CCRYGG 1 cut(s) 260
BtgZI GCGATG 1 cut(s) 391
BtsIMutI CAGTG 2 cut(s) 589, 678
Cac8I GCNNGC 1 cut(s) 186
Cfr13I GGNCC 3 cut(s) 39, 273, 295
CpoI CGGWCCG 1 cut(s) 295
CseI GACGC 2 cut(s) 128, 483
Csp6I GTAC 4 cut(s) 25, 248, 355, 675
CspI CGGWCCG 1 cut(s) 295
CviAII CATG 2 cut(s) 727, 804
CviQI GTAC 4 cut(s) 25, 248, 355, 675
DdeI CTNAG 2 cut(s) 87, 581
DpnI GATC 5 cut(s) 438, 470, 506, 671, 837
DpnII GATC 5 cut(s) 436, 468, 504, 669, 835
DriI GACNNNNNGTC 1 cut(s) 763
EaeI YGGCCR 2 cut(s) 186, 257
EagI CGGCCG 1 cut(s) 257
Eam1104I CTCTTC 3 cut(s) 29, 150, 224
Eam1105I GACNNNNNGTC 1 cut(s) 763
EarI CTCTTC 3 cut(s) 29, 150, 224
EciI GGCGGA 1 cut(s) 350
EclXI CGGCCG 1 cut(s) 257
Eco147I AGGCCT 1 cut(s) 607
Eco47I GGWCC 2 cut(s) 39, 295
Eco52I CGGCCG 1 cut(s) 257
Eco57I CTGAAG 1 cut(s) 702
EcoO109I RGGNCCY 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 607
Esp3I CGTCTC 1 cut(s) 750
FaeI CATG 2 cut(s) 730, 807
FaiI YATR 7 cut(s) 387, 513, 534, 651, 689, 728, 805
FaqI GGGAC 3 cut(s) 68, 289, 396
FatI CATG 2 cut(s) 726, 803
FauI CCCGC 1 cut(s) 533
FbaI TGATCA 1 cut(s) 669
FblI GTMKAC 1 cut(s) 614
Fnu4HI GCNGC 5 cut(s) 254, 257, 276, 345, 366
Fsp4HI GCNGC 5 cut(s) 254, 257, 276, 345, 366
GluI GCNGC 5 cut(s) 254, 257, 276, 345, 366
HaeIII GGCC 4 cut(s) 188, 259, 275, 607
HapII CCGG 5 cut(s) 97, 221, 241, 293, 740
HgaI GACGC 2 cut(s) 128, 483
Hin1II CATG 2 cut(s) 730, 807
HincII GTYRAC 1 cut(s) 615
HindII GTYRAC 1 cut(s) 615
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 9 cut(s) 5, 150, 161, 193, 283, 443, 458, 712, 782
HpaII CCGG 5 cut(s) 97, 221, 241, 293, 740
HphI GGTGA 2 cut(s) 37, 100
Hpy166II GTNNAC 3 cut(s) 27, 355, 615
Hpy188I TCNGA 6 cut(s) 166, 198, 320, 436, 769, 854
Hpy188III TCNNGA 7 cut(s) 70, 97, 287, 328, 397, 440, 833
Hpy8I GTNNAC 3 cut(s) 27, 355, 615
Hpy99I CGWCG 2 cut(s) 116, 619
HpyAV CCTTC 1 cut(s) 426
HpyCH4III ACNGT 1 cut(s) 133
HpyCH4IV ACGT 2 cut(s) 75, 323
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 341
HpyF3I CTNAG 2 cut(s) 87, 581
HpySE526I ACGT 2 cut(s) 75, 323
Hsp92II CATG 2 cut(s) 730, 807
Kpn2I TCCGGA 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 669
Kzo9I GATC 5 cut(s) 436, 468, 504, 669, 835
LmnI GCTCC 4 cut(s) 415, 569, 619, 706
Lsp1109I GCAGC 3 cut(s) 265, 352, 356
MaeII ACGT 2 cut(s) 75, 323
MaeIII GTNAC 5 cut(s) 106, 287, 590, 653, 700
MalI GATC 5 cut(s) 438, 470, 506, 671, 837
MboI GATC 5 cut(s) 436, 468, 504, 669, 835
MboII GAAGA 6 cut(s) 46, 167, 241, 438, 441, 685
MlsI TGGCCA 1 cut(s) 188
MluNI TGGCCA 1 cut(s) 188
MlyI GAGTC 2 cut(s) 170, 467
MmeI TCCRAC 2 cut(s) 699, 792
Mox20I TGGCCA 1 cut(s) 188
MroI TCCGGA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 188
MseI TTAA 1 cut(s) 642
MslI CAYNNNNRTG 1 cut(s) 808
Msp20I TGGCCA 1 cut(s) 188
MspA1I CMGCKG 1 cut(s) 256
MspI CCGG 5 cut(s) 97, 221, 241, 293, 740
MspR9I CCNGG 3 cut(s) 242, 293, 609
Mva1269I GAATGC 2 cut(s) 496, 558
MvaI CCWGG 1 cut(s) 609
MwoI GCNNNNNNNGC 2 cut(s) 61, 341
NciI CCSGG 2 cut(s) 242, 293
NdeII GATC 5 cut(s) 436, 468, 504, 669, 835
NlaIII CATG 2 cut(s) 730, 807
NlaIV GGNNCC 3 cut(s) 41, 708, 738
NmeAIII GCCGAG 1 cut(s) 304
NmuCI GTSAC 3 cut(s) 106, 287, 590
NspV TTCGAA 2 cut(s) 452, 488
PceI AGGCCT 1 cut(s) 607
PcsI WCGNNNNNNNCGW 1 cut(s) 765
PctI GAATGC 2 cut(s) 496, 558
PfeI GAWTC 7 cut(s) 5, 150, 193, 283, 443, 712, 782
Pfl23II CGTACG 1 cut(s) 247
PflFI GACNNNGTC 2 cut(s) 131, 293
PkrI GCNGC 5 cut(s) 255, 258, 277, 346, 367
Ple19I CGATCG 1 cut(s) 507
PleI GAGTC 2 cut(s) 169, 466
PpsI GAGTC 2 cut(s) 169, 466
PpuMI RGGWCCY 1 cut(s) 39
Psp1406I AACGTT 2 cut(s) 75, 323
Psp5II RGGWCCY 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 607
PspGI CCWGG 1 cut(s) 607
PspLI CGTACG 1 cut(s) 247
PspN4I GGNNCC 3 cut(s) 41, 708, 738
PspPI GGNCC 3 cut(s) 39, 273, 295
PspPPI RGGWCCY 1 cut(s) 39
PsyI GACNNNGTC 2 cut(s) 131, 293
PvuI CGATCG 1 cut(s) 507
RsaI GTAC 4 cut(s) 26, 249, 356, 676
RsaNI GTAC 4 cut(s) 25, 248, 355, 675
RseI CAYNNNNRTG 1 cut(s) 808
Rsr2I CGGWCCG 1 cut(s) 295
RsrII CGGWCCG 1 cut(s) 295
SalI GTCGAC 1 cut(s) 613
SaqAI TTAA 1 cut(s) 642
SatI GCNGC 5 cut(s) 254, 257, 276, 345, 366
Sau3AI GATC 5 cut(s) 436, 468, 504, 669, 835
Sau96I GGNCC 3 cut(s) 39, 273, 295
SchI GAGTC 2 cut(s) 170, 467
ScrFI CCNGG 3 cut(s) 242, 293, 609
SetI ASST 7 cut(s) 57, 78, 326, 367, 575, 688, 803
SfuI TTCGAA 2 cut(s) 452, 488
SinI GGWCC 2 cut(s) 39, 295
SmiMI CAYNNNNRTG 1 cut(s) 808
SseBI AGGCCT 1 cut(s) 607
SsiI CCGC 5 cut(s) 256, 276, 298, 335, 540
StuI AGGCCT 1 cut(s) 607
StyD4I CCNGG 3 cut(s) 240, 291, 607
TaaI ACNGT 1 cut(s) 133
TaiI ACGT 2 cut(s) 78, 326
TaqI TCGA 7 cut(s) 153, 452, 467, 488, 503, 507, 614
TatI WGTACW 1 cut(s) 24
TauI GCSGC 2 cut(s) 259, 278
TfiI GAWTC 7 cut(s) 5, 150, 193, 283, 443, 712, 782
Tru1I TTAA 1 cut(s) 642
Tru9I TTAA 1 cut(s) 642
TscAI CASTG 2 cut(s) 589, 685
TseFI GTSAC 3 cut(s) 106, 287, 590
TseI GCWGC 3 cut(s) 253, 344, 365
Tsp45I GTSAC 3 cut(s) 106, 287, 590
TspDTI ATGAA 2 cut(s) 642, 743
TspGWI ACGGA 4 cut(s) 44, 94, 632, 719
TspRI CASTG 2 cut(s) 589, 685
Tth111I GACNNNGTC 2 cut(s) 131, 293
VpaK11BI GGWCC 2 cut(s) 39, 295
XmiI GTMKAC 1 cut(s) 614
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.