Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

16212268 .. 16213125

Gene Structure 858 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g14280.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 858 bp

ATGGATGGGCCCAAGCAACGCACGCAGAGTCGTACGGTCACAAACAAACTCGTCAAGACGCTCACCACCCACTTCCGTGAATCCAATGCCGGCCGAGCCCCCAAAATCGTACGGATTTTCGTCACCGACGACAACGCCACCGACTCTTCCGGCGACGAAGAAGAACCCTCGCCGAGCCGGAAACACCGGGTTCTCGTGAAGCGCGTCATCAACGAGGTCAGAATCGAGGACTCTTCTTCGCAAACGATACTCCTTCCAAAACCGAAGGCTCGGAGGTGCAGACCGGTGGAGGAGAGTAACGAGGTTTCGCCGAACGGGAAGAAATACCGAGGCGTACGGCGGAGGCCGTGGGGGAAATGGGCTGCGGAGATCCGAGACCCGCATCGTGGAGTCCGGGTCTGGCTCGGAACATTCGAGACGGCGGAGGAGGCCGGTATGGCTTACGATAAGGCCGCCATTGCGTTTAAAGGACCTCTGGCTTTGACCAATTTCCTCAAGCCTCCCGAAAACGCCATTCCGGATAACTCGGACGTGGACTGCAACCAAATCTCTCAGTCTCCGCACAACTCGGATTGCAATCACTGTGTGCGGTCGCCGACCTCTGTTCTCAGTGGCCGAGATGCTGAAATCGTCTGGAAACCGGTTGTTGGGGTTTCGGAGCGACAAAATTTCGGGGCTGTTGATACGGAATTTTGGTTGAAAGATTGCTTCGAACCGCCGATATGTTTCGACGAAATGAGAGTCGTACCCGAAACGCTGTTAAAAGATGAGGATTTCTCCGATTTATCGCTCGATTTCCGGTCGTGTAATTGGGATGACGTGGAGTATTACTTTCAAGGTGCTTATGAGTTAAAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

286

Amino Acids

32.39

Weight (kDa)

6.04

Isoelectric Point (pI)

49.27

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	108 - 157	1.5e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	204
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	8 cut(s)	340, 365, 380, 422, 453, 560, 589, 716
AclWI	GGATC	1 cut(s)	364
AcoI	YGGCCR	2 cut(s)	91, 613
AcsI	RAATTY	2 cut(s)	667, 689
AdeI	CACNNNGTG	1 cut(s)	586
AfaI	GTAC	4 cut(s)	34, 111, 336, 747
AfiI	CCNNNNNNNGG	2 cut(s)	386, 647
AgeI	ACCGGT	2 cut(s)	283, 640
AgsI	TTSAA	2 cut(s)	700, 836
AjiI	CACGTC	2 cut(s)	532, 820
AleI	CACNNNNGTG	1 cut(s)	75
Alw26I	GTCTC	3 cut(s)	369, 410, 561
AlwI	GGATC	1 cut(s)	364
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	6 cut(s)	8, 91, 344, 429, 450, 613
ApaI	GGGCCC	1 cut(s)	12
ApeKI	GCWGC	1 cut(s)	362
ApoI	RAATTY	2 cut(s)	667, 689
ArsI	GACNNNNNNTTYG	2 cut(s)	726, 758
AsiGI	ACCGGT	2 cut(s)	283, 640
AspLEI	GCGC	1 cut(s)	204
AspS9I	GGNCC	3 cut(s)	8, 9, 470
AsuC2I	CCSGG	2 cut(s)	188, 395
AsuHPI	GGTGA	2 cut(s)	55, 115
AsuII	TTCGAA	1 cut(s)	711
AvaII	GGWCC	1 cut(s)	470
BaeGI	GKGCMC	1 cut(s)	12
BanII	GRGCYC	2 cut(s)	12, 100
BauI	CACGAG	1 cut(s)	194
BbvI	GCAGC	1 cut(s)	349
BceAI	ACGGC	3 cut(s)	331, 353, 435
BcnI	CCSGG	2 cut(s)	188, 395
BcoDI	GTCTC	3 cut(s)	369, 410, 561
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	2 cut(s)	363, 453
BlsI	GCNGC	2 cut(s)	364, 454
Bme1390I	CCNGG	2 cut(s)	188, 395
Bme18I	GGWCC	1 cut(s)	470
BmgBI	CACGTC	2 cut(s)	532, 820
BmgT120I	GGNCC	3 cut(s)	8, 9, 470
BmiI	GGNNCC	1 cut(s)	10
BmrFI	CCNGG	2 cut(s)	188, 395
BmsI	GCATC	2 cut(s)	391, 610
BplI	GAGNNNNNCTC	2 cut(s)	761, 793
Bpu14I	TTCGAA	1 cut(s)	711
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	2 cut(s)	188, 395
BsaBI	GATNNNNATC	1 cut(s)	576
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	328, 347
BsaWI	WCCGGW	4 cut(s)	283, 517, 640, 798
BsaXI	ACNNNNNCTCC	2 cut(s)	381, 411
Bsc4I	CCNNNNNNNGG	2 cut(s)	386, 647
Bse118I	RCCGGY	4 cut(s)	89, 283, 431, 640
Bse3DI	GCAATG	1 cut(s)	456
Bse8I	GATNNNNATC	1 cut(s)	576
BseAI	TCCGGA	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	328, 347
BseGI	GGATG	2 cut(s)	10, 820
BseJI	GATNNNNATC	1 cut(s)	576
BseLI	CCNNNNNNNGG	2 cut(s)	386, 647
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	566, 622
BseRI	GAGGAG	2 cut(s)	305, 440
BseSI	GKGCMC	1 cut(s)	12
BseX3I	CGGCCG	1 cut(s)	91
BseXI	GCAGC	1 cut(s)	349
BsgI	GTGCAG	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	204
Bsh1285I	CGRYCG	3 cut(s)	94, 593, 803
BshFI	GGCC	6 cut(s)	10, 93, 346, 431, 452, 615
BshTI	ACCGGT	2 cut(s)	283, 640
BsiEI	CGRYCG	3 cut(s)	94, 593, 803
BsiWI	CGTACG	3 cut(s)	32, 109, 334
BslI	CCNNNNNNNGG	2 cut(s)	386, 647
BsmAI	GTCTC	3 cut(s)	369, 410, 561
BsmBI	CGTCTC	1 cut(s)	410
BsnI	GGCC	6 cut(s)	10, 93, 346, 431, 452, 615
Bso31I	GGTCTC	1 cut(s)	369
Bsp119I	TTCGAA	1 cut(s)	711
Bsp120I	GGGCCC	1 cut(s)	8
Bsp1286I	GDGCHC	2 cut(s)	12, 100
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	1 cut(s)	369
BspACI	CCGC	8 cut(s)	340, 365, 380, 422, 453, 560, 589, 716
BspANI	GGCC	6 cut(s)	10, 93, 346, 431, 452, 615
BspCNI	CTCAG	2 cut(s)	565, 621
BspEI	TCCGGA	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	10
BspPI	GGATC	1 cut(s)	364
BspT104I	TTCGAA	1 cut(s)	711
BspTNI	GGTCTC	1 cut(s)	369
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	4 cut(s)	89, 283, 431, 640
BssAI	RCCGGY	4 cut(s)	89, 283, 431, 640
BssECI	CCNNGG	2 cut(s)	328, 347
BssMI	GATC	1 cut(s)	369
BssSI	CACGAG	1 cut(s)	194
Bst2BI	CACGAG	1 cut(s)	194
Bst4CI	ACNGT	2 cut(s)	37, 584
Bst6I	CTCTTC	2 cut(s)	151, 238
BstBI	TTCGAA	1 cut(s)	711
BstC8I	GCNNGC	2 cut(s)	23, 91
BstDEI	CTNAG	2 cut(s)	552, 608
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	2 cut(s)	10, 820
BstFNI	CGCG	1 cut(s)	204
BstHHI	GCGC	1 cut(s)	204
BstKTI	GATC	1 cut(s)	372
BstMAI	GTCTC	3 cut(s)	369, 410, 561
BstMBI	GATC	1 cut(s)	369
BstMCI	CGRYCG	3 cut(s)	94, 593, 803
BstMWI	GCNNNNNNNGC	5 cut(s)	22, 95, 428, 437, 458
BstSCI	CCNGG	2 cut(s)	186, 393
BstSLI	GKGCMC	1 cut(s)	12
BstUI	CGCG	1 cut(s)	204
BstV1I	GCAGC	1 cut(s)	349
BstX2I	RGATCY	1 cut(s)	369
BstYI	RGATCY	1 cut(s)	369
BstZI	CGGCCG	1 cut(s)	91
BsuRI	GGCC	6 cut(s)	10, 93, 346, 431, 452, 615
BtgI	CCRYGG	1 cut(s)	347
BtrI	CACGTC	2 cut(s)	532, 820
BtsCI	GGATG	2 cut(s)	10, 820
BtsIMutI	CAGTG	2 cut(s)	580, 616
Cac8I	GCNNGC	2 cut(s)	23, 91
CfoI	GCGC	1 cut(s)	204
Cfr10I	RCCGGY	4 cut(s)	89, 283, 431, 640
Cfr13I	GGNCC	3 cut(s)	8, 9, 470
CseI	GACGC	2 cut(s)	67, 193
Csp6I	GTAC	4 cut(s)	33, 110, 335, 746
CspAI	ACCGGT	2 cut(s)	283, 640
CviQI	GTAC	4 cut(s)	33, 110, 335, 746
DdeI	CTNAG	2 cut(s)	552, 608
DpnI	GATC	1 cut(s)	371
DpnII	GATC	1 cut(s)	369
DraI	TTTAAA	1 cut(s)	466
DraIII	CACNNNGTG	1 cut(s)	586
EaeI	YGGCCR	2 cut(s)	91, 613
EagI	CGGCCG	1 cut(s)	91
Eam1104I	CTCTTC	2 cut(s)	151, 238
EarI	CTCTTC	2 cut(s)	151, 238
EciI	GGCGGA	2 cut(s)	355, 437
EclXI	CGGCCG	1 cut(s)	91
Eco24I	GRGCYC	2 cut(s)	12, 100
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	1 cut(s)	470
Eco52I	CGGCCG	1 cut(s)	91
EcoO109I	RGGNCCY	1 cut(s)	470
EcoT38I	GRGCYC	2 cut(s)	12, 100
Esp3I	CGTCTC	1 cut(s)	410
FaiI	YATR	3 cut(s)	437, 724, 846
FauI	CCCGC	1 cut(s)	387
Fnu4HI	GCNGC	2 cut(s)	363, 453
FokI	GGATG	2 cut(s)	17, 827
FriOI	GRGCYC	2 cut(s)	12, 100
Fsp4HI	GCNGC	2 cut(s)	363, 453
GlaI	GCGC	1 cut(s)	203
GluI	GCNGC	2 cut(s)	363, 453
HaeIII	GGCC	6 cut(s)	10, 93, 346, 431, 452, 615
HgaI	GACGC	2 cut(s)	67, 193
HhaI	GCGC	1 cut(s)	204
Hin6I	GCGC	1 cut(s)	202
HinP1I	GCGC	1 cut(s)	202
HinfI	GANTC	7 cut(s)	28, 80, 143, 222, 230, 390, 741
HphI	GGTGA	2 cut(s)	55, 115
Hpy166II	GTNNAC	1 cut(s)	535
Hpy188I	TCNGA	8 cut(s)	221, 273, 374, 407, 529, 571, 658, 781
Hpy188III	TCNNGA	6 cut(s)	55, 196, 415, 503, 518, 634
Hpy8I	GTNNAC	1 cut(s)	535
Hpy99I	CGWCG	3 cut(s)	131, 158, 734
HpyAV	CCTTC	2 cut(s)	259, 263
HpyCH4III	ACNGT	2 cut(s)	37, 584
HpyCH4IV	ACGT	2 cut(s)	531, 819
HpyCH4V	TGCA	3 cut(s)	279, 540, 576
HpyF10VI	GCNNNNNNNGC	5 cut(s)	22, 95, 428, 437, 458
HpyF3I	CTNAG	2 cut(s)	552, 608
HpySE526I	ACGT	2 cut(s)	531, 819
HspAI	GCGC	1 cut(s)	202
Kpn2I	TCCGGA	1 cut(s)	517
KroI	GCCGGC	1 cut(s)	89
KroNI	GCCGGC	1 cut(s)	91
Kzo9I	GATC	1 cut(s)	369
LmnI	GCTCC	1 cut(s)	658
Lsp1109I	GCAGC	1 cut(s)	349
LweI	GCATC	2 cut(s)	391, 610
MaeII	ACGT	2 cut(s)	531, 819
MaeIII	GTNAC	3 cut(s)	37, 121, 296
MalI	GATC	1 cut(s)	371
MboI	GATC	1 cut(s)	369
MboII	GAAGA	6 cut(s)	138, 170, 173, 225, 228, 331
MflI	RGATCY	1 cut(s)	369
MhlI	GDGCHC	2 cut(s)	12, 100
MluCI	AATT	4 cut(s)	487, 667, 689, 808
MlyI	GAGTC	5 cut(s)	37, 137, 224, 399, 750
MroI	TCCGGA	1 cut(s)	517
MroNI	GCCGGC	1 cut(s)	89
MseI	TTAA	3 cut(s)	465, 761, 851
MslI	CAYNNNNRTG	1 cut(s)	75
MspR9I	CCNGG	2 cut(s)	188, 395
MvnI	CGCG	1 cut(s)	204
MwoI	GCNNNNNNNGC	5 cut(s)	22, 95, 428, 437, 458
NaeI	GCCGGC	1 cut(s)	91
NciI	CCSGG	2 cut(s)	188, 395
NdeII	GATC	1 cut(s)	369
NgoMIV	GCCGGC	1 cut(s)	89
NlaIV	GGNNCC	1 cut(s)	10
NmeAIII	GCCGAG	3 cut(s)	119, 198, 641
NmuCI	GTSAC	2 cut(s)	37, 121
NspV	TTCGAA	1 cut(s)	711
OliI	CACNNNNGTG	1 cut(s)	75
PcsI	WCGNNNNNNNCGW	3 cut(s)	126, 201, 411
PdiI	GCCGGC	1 cut(s)	91
PfeI	GAWTC	2 cut(s)	80, 222
Pfl23II	CGTACG	3 cut(s)	32, 109, 334
PinAI	ACCGGT	2 cut(s)	283, 640
PkrI	GCNGC	2 cut(s)	364, 454
PleI	GAGTC	5 cut(s)	36, 137, 224, 398, 749
PpsI	GAGTC	5 cut(s)	36, 137, 224, 398, 749
PpuMI	RGGWCCY	1 cut(s)	470
Psp5II	RGGWCCY	1 cut(s)	470
PspLI	CGTACG	3 cut(s)	32, 109, 334
PspN4I	GGNNCC	1 cut(s)	10
PspOMI	GGGCCC	1 cut(s)	8
PspPI	GGNCC	3 cut(s)	8, 9, 470
PspPPI	RGGWCCY	1 cut(s)	470
PsuI	RGATCY	1 cut(s)	369
RsaI	GTAC	4 cut(s)	34, 111, 336, 747
RsaNI	GTAC	4 cut(s)	33, 110, 335, 746
RseI	CAYNNNNRTG	1 cut(s)	75
SaqAI	TTAA	3 cut(s)	465, 761, 851
SatI	GCNGC	2 cut(s)	363, 453
Sau3AI	GATC	1 cut(s)	369
Sau96I	GGNCC	3 cut(s)	8, 9, 470
SchI	GAGTC	5 cut(s)	37, 137, 224, 399, 750
ScrFI	CCNGG	2 cut(s)	188, 395
SduI	GDGCHC	2 cut(s)	12, 100
SetI	ASST	8 cut(s)	219, 278, 306, 475, 534, 602, 822, 841
SfaNI	GCATC	2 cut(s)	391, 610
SfuI	TTCGAA	1 cut(s)	711
SinI	GGWCC	1 cut(s)	470
SmiMI	CAYNNNNRTG	1 cut(s)	75
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	4 cut(s)	487, 667, 689, 808
SsiI	CCGC	8 cut(s)	340, 365, 380, 422, 453, 560, 589, 716
StyD4I	CCNGG	2 cut(s)	186, 393
TaaI	ACNGT	2 cut(s)	37, 584
TaiI	ACGT	2 cut(s)	534, 822
TaqI	TCGA	5 cut(s)	225, 414, 711, 729, 792
TasI	AATT	4 cut(s)	487, 667, 689, 808
TauI	GCSGC	1 cut(s)	455
TfiI	GAWTC	2 cut(s)	80, 222
Tru1I	TTAA	3 cut(s)	465, 761, 851
Tru9I	TTAA	3 cut(s)	465, 761, 851
TscAI	CASTG	2 cut(s)	587, 616
TseFI	GTSAC	2 cut(s)	37, 121
TseI	GCWGC	1 cut(s)	362
Tsp45I	GTSAC	2 cut(s)	37, 121
TspGWI	ACGGA	3 cut(s)	65, 127, 701
TspRI	CASTG	2 cut(s)	587, 616
VpaK11BI	GGWCC	1 cut(s)	470
XapI	RAATTY	2 cut(s)	667, 689

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.