Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr2C

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

75513744 .. 75516484

Gene Structure 2741 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh2CG575100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGGCCTCAAGACATATAAAGGCCGGCGTAGTCACTGATAAGAGTCATATAAAGTTCATTTTCGTCACCGACAAGGACGCGACCGTTGCAATCCCTAAGATTGTCCGGATTTCAATCACCGACGAGGACGAGACCGACACCTCCAGCGACGAAGAAGAACAAGACCAACAACAACGACTGACGAAGAGGGTCATCAACGAAGTGAGAATCGAAGAGGAGTCCGAGGCGGTTAGGGTGTTTCTGGCCAAGAATCAGAAGCAAAAGCCGAAGCCTTTACCGGAGGAGAAGAGGAAGTTCCGGGGCGTACTGCAGCGGCCGTGGGGCAAATGGGCAGCCGAGATTTGTGACCCGGTCCGCAAGTCCCGTGTCTGGCTCGGAAGGTTTCAGACAGCGGAGGAGGCGGCGATGGTGTACGACAGAGCTGCCATTCAGTTGAGGGGACATAACGCTCTCACGAATATCATCGCTCCTCATTCCAAAATTCTCATTCCGAATCACGATTCTTCTTCGAATGAGTCCAGTTCGATCAACAATCTTTCTTGTTCGAATGCGTCCAGTTCGATCAATCATATTGTTGTGATAGATGAGTATGATTTCGGGAAAGAGTGTCAGAGCATTCGCTCCCCGACCTCTGTTCTATGTGGTAGTGACAACGAGTGGAGACTTGGGTCGAAGGAGCAGGATGAAACTCATTTCGTTAAAGACTATGGTTACTTTGATGGTGTGATCAGTCCCACTAAAGCTATATTCTTCGGTGTTACAGAGCCGATTCTGTTGGAGGAAATGAACTTGGTGCCAGAAACAATGTTGCTTAGTAGTGAATTGTTTCTTCAATTCCCCACCGTGACGTTCTTCCCCACCGCAGCTTGCTTGCGCAGTCTGGCCCCATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

296

Amino Acids

33.4

Weight (kDa)

5.61

Isoelectric Point (pI)

62.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	98 - 148	7.5e-13	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	875
AccB1I	GGYRCC	1 cut(s)	793
AccII	CGCG	1 cut(s)	80
AccIII	TCCGGA	1 cut(s)	105
AciI	CCGC	6 cut(s)	227, 313, 355, 392, 401, 861
AcoI	YGGCCR	2 cut(s)	243, 314
AcsI	RAATTY	1 cut(s)	480
AfaI	GTAC	2 cut(s)	306, 413
AfiI	CCNNNNNNNGG	1 cut(s)	369
AgsI	TTSAA	2 cut(s)	114, 833
AluBI	AGCT	3 cut(s)	422, 743, 866
AluI	AGCT	3 cut(s)	422, 743, 866
Alw26I	GTCTC	2 cut(s)	125, 655
Aor13HI	TCCGGA	1 cut(s)	105
AoxI	GGCC	5 cut(s)	3, 21, 243, 314, 882
ApeKI	GCWGC	4 cut(s)	310, 332, 422, 863
ApoI	RAATTY	1 cut(s)	480
Asp700I	GAANNNNTTC	1 cut(s)	825
AspLEI	GCGC	1 cut(s)	876
AspS9I	GGNCC	2 cut(s)	352, 883
AsuC2I	CCSGG	2 cut(s)	299, 350
AsuHPI	GGTGA	2 cut(s)	58, 109
AsuII	TTCGAA	2 cut(s)	509, 545
AvaII	GGWCC	1 cut(s)	352
BalI	TGGCCA	1 cut(s)	245
BanI	GGYRCC	1 cut(s)	793
BbvI	GCAGC	4 cut(s)	322, 344, 409, 875
BccI	CCATC	2 cut(s)	400, 713
BceAI	ACGGC	1 cut(s)	301
BcgI	CGANNNNNNTGC	2 cut(s)	404, 438
BclI	TGATCA	1 cut(s)	726
BcnI	CCSGG	2 cut(s)	299, 350
BcoDI	GTCTC	2 cut(s)	125, 655
BfmI	CTRYAG	1 cut(s)	308
BisI	GCNGC	6 cut(s)	311, 314, 333, 402, 423, 864
BlsI	GCNGC	6 cut(s)	312, 315, 334, 403, 424, 865
Bme1390I	CCNGG	2 cut(s)	299, 350
Bme18I	GGWCC	1 cut(s)	352
BmgT120I	GGNCC	2 cut(s)	352, 883
BmiI	GGNNCC	2 cut(s)	795, 885
BmrFI	CCNGG	2 cut(s)	299, 350
BoxI	GACNNNNGTC	1 cut(s)	667
BpmI	CTGGAG	1 cut(s)	127
Bpu14I	TTCGAA	2 cut(s)	509, 545
BpuMI	CCSGG	2 cut(s)	299, 350
BsaBI	GATNNNNATC	1 cut(s)	113
BsaI	GGTCTC	1 cut(s)	125
BsaJI	CCNNGG	3 cut(s)	222, 298, 317
BsaWI	WCCGGW	2 cut(s)	105, 277
Bsc4I	CCNNNNNNNGG	1 cut(s)	369
Bse118I	RCCGGY	1 cut(s)	23
Bse1I	ACTGG	2 cut(s)	519, 555
Bse8I	GATNNNNATC	1 cut(s)	113
BseAI	TCCGGA	1 cut(s)	105
BseDI	CCNNGG	3 cut(s)	222, 298, 317
BseGI	GGATG	1 cut(s)	688
BseJI	GATNNNNATC	1 cut(s)	113
BseLI	CCNNNNNNNGG	1 cut(s)	369
BseNI	ACTGG	2 cut(s)	519, 555
BseRI	GAGGAG	4 cut(s)	230, 296, 410, 459
BseX3I	CGGCCG	1 cut(s)	314
BseXI	GCAGC	4 cut(s)	322, 344, 409, 875
Bsh1236I	CGCG	1 cut(s)	80
Bsh1285I	CGRYCG	2 cut(s)	84, 317
BshFI	GGCC	5 cut(s)	5, 23, 245, 316, 884
BshNI	GGYRCC	1 cut(s)	793
BsiEI	CGRYCG	2 cut(s)	84, 317
BsiSI	CCGG	5 cut(s)	24, 106, 278, 298, 350
BslFI	GGGAC	3 cut(s)	346, 453, 717
BslI	CCNNNNNNNGG	1 cut(s)	369
BsmAI	GTCTC	2 cut(s)	125, 655
BsmFI	GGGAC	3 cut(s)	346, 453, 717
BsmI	GAATGC	2 cut(s)	553, 615
BsnI	GGCC	5 cut(s)	5, 23, 245, 316, 884
Bso31I	GGTCTC	1 cut(s)	125
Bsp119I	TTCGAA	2 cut(s)	509, 545
Bsp13I	TCCGGA	1 cut(s)	105
Bsp143I	GATC	3 cut(s)	525, 561, 726
BspACI	CCGC	6 cut(s)	227, 313, 355, 392, 401, 861
BspANI	GGCC	5 cut(s)	5, 23, 245, 316, 884
BspEI	TCCGGA	1 cut(s)	105
BspFNI	CGCG	1 cut(s)	80
BspLI	GGNNCC	2 cut(s)	795, 885
BspMAI	CTGCAG	1 cut(s)	312
BspT104I	TTCGAA	2 cut(s)	509, 545
BspT107I	GGYRCC	1 cut(s)	793
BspTNI	GGTCTC	1 cut(s)	125
BsrFI	RCCGGY	1 cut(s)	23
BsrI	ACTGG	2 cut(s)	519, 555
BssAI	RCCGGY	1 cut(s)	23
BssECI	CCNNGG	3 cut(s)	222, 298, 317
BssMI	GATC	3 cut(s)	525, 561, 726
Bst4CI	ACNGT	2 cut(s)	85, 844
Bst6I	CTCTTC	3 cut(s)	179, 207, 281
BstBI	TTCGAA	2 cut(s)	509, 545
BstC8I	GCNNGC	3 cut(s)	25, 868, 872
BstDEI	CTNAG	2 cut(s)	96, 812
BstDSI	CCRYGG	1 cut(s)	317
BstF5I	GGATG	1 cut(s)	688
BstFNI	CGCG	1 cut(s)	80
BstHHI	GCGC	1 cut(s)	876
BstKTI	GATC	3 cut(s)	528, 564, 729
BstMAI	GTCTC	2 cut(s)	125, 655
BstMBI	GATC	3 cut(s)	525, 561, 726
BstMCI	CGRYCG	2 cut(s)	84, 317
BstMWI	GCNNNNNNNGC	2 cut(s)	86, 398
BstPAI	GACNNNNGTC	1 cut(s)	667
BstSCI	CCNGG	2 cut(s)	297, 348
BstSFI	CTRYAG	1 cut(s)	308
BstUI	CGCG	1 cut(s)	80
BstV1I	GCAGC	4 cut(s)	322, 344, 409, 875
BstZI	CGGCCG	1 cut(s)	314
BsuRI	GGCC	5 cut(s)	5, 23, 245, 316, 884
BtgI	CCRYGG	1 cut(s)	317
BtgZI	GCGATG	2 cut(s)	419, 448
BtsCI	GGATG	1 cut(s)	688
BtsIMutI	CAGTG	1 cut(s)	33
Cac8I	GCNNGC	3 cut(s)	25, 868, 872
CfoI	GCGC	1 cut(s)	876
Cfr10I	RCCGGY	1 cut(s)	23
Cfr13I	GGNCC	2 cut(s)	352, 883
CpoI	CGGWCCG	1 cut(s)	352
CseI	GACGC	2 cut(s)	86, 540
Csp6I	GTAC	2 cut(s)	305, 412
CspI	CGGWCCG	1 cut(s)	352
CviQI	GTAC	2 cut(s)	305, 412
DdeI	CTNAG	2 cut(s)	96, 812
DpnI	GATC	3 cut(s)	527, 563, 728
DpnII	GATC	3 cut(s)	525, 561, 726
EaeI	YGGCCR	2 cut(s)	243, 314
EagI	CGGCCG	1 cut(s)	314
Eam1104I	CTCTTC	3 cut(s)	179, 207, 281
EarI	CTCTTC	3 cut(s)	179, 207, 281
EclXI	CGGCCG	1 cut(s)	314
Eco31I	GGTCTC	1 cut(s)	125
Eco47I	GGWCC	1 cut(s)	352
Eco52I	CGGCCG	1 cut(s)	314
FaqI	GGGAC	3 cut(s)	346, 453, 717
FbaI	TGATCA	1 cut(s)	726
Fnu4HI	GCNGC	6 cut(s)	311, 314, 333, 402, 423, 864
FokI	GGATG	1 cut(s)	695
Fsp4HI	GCNGC	6 cut(s)	311, 314, 333, 402, 423, 864
FspI	TGCGCA	1 cut(s)	875
GlaI	GCGC	1 cut(s)	875
GluI	GCNGC	6 cut(s)	311, 314, 333, 402, 423, 864
GsuI	CTGGAG	1 cut(s)	127
HaeIII	GGCC	5 cut(s)	5, 23, 245, 316, 884
HapII	CCGG	5 cut(s)	24, 106, 278, 298, 350
HgaI	GACGC	2 cut(s)	86, 540
HhaI	GCGC	1 cut(s)	876
Hin6I	GCGC	1 cut(s)	874
HinP1I	GCGC	1 cut(s)	874
HinfI	GANTC	8 cut(s)	43, 207, 218, 250, 493, 500, 515, 769
HpaII	CCGG	5 cut(s)	24, 106, 278, 298, 350
HphI	GGTGA	2 cut(s)	58, 109
Hpy166II	GTNNAC	1 cut(s)	412
Hpy188I	TCNGA	6 cut(s)	223, 255, 377, 387, 492, 612
Hpy188III	TCNNGA	5 cut(s)	9, 106, 454, 497, 598
Hpy8I	GTNNAC	1 cut(s)	412
Hpy99I	CGWCG	2 cut(s)	125, 152
HpyAV	CCTTC	2 cut(s)	372, 667
HpyCH4III	ACNGT	2 cut(s)	85, 844
HpyCH4IV	ACGT	1 cut(s)	848
HpyCH4V	TGCA	2 cut(s)	89, 310
HpyF10VI	GCNNNNNNNGC	2 cut(s)	86, 398
HpyF3I	CTNAG	2 cut(s)	96, 812
HpySE526I	ACGT	1 cut(s)	848
HspAI	GCGC	1 cut(s)	874
Kpn2I	TCCGGA	1 cut(s)	105
KroI	GCCGGC	1 cut(s)	23
KroNI	GCCGGC	1 cut(s)	25
Ksp22I	TGATCA	1 cut(s)	726
Kzo9I	GATC	3 cut(s)	525, 561, 726
LmnI	GCTCC	3 cut(s)	472, 626, 676
Lsp1109I	GCAGC	4 cut(s)	322, 344, 409, 875
MaeII	ACGT	1 cut(s)	848
MaeIII	GTNAC	7 cut(s)	31, 64, 344, 647, 710, 757, 844
MalI	GATC	3 cut(s)	527, 563, 728
MboI	GATC	3 cut(s)	525, 561, 726
MlsI	TGGCCA	1 cut(s)	245
MluCI	AATT	3 cut(s)	480, 821, 833
MluNI	TGGCCA	1 cut(s)	245
MlyI	GAGTC	3 cut(s)	52, 227, 524
MmeI	TCCRAC	1 cut(s)	756
Mox20I	TGGCCA	1 cut(s)	245
MroI	TCCGGA	1 cut(s)	105
MroNI	GCCGGC	1 cut(s)	23
MroXI	GAANNNNTTC	1 cut(s)	825
MscI	TGGCCA	1 cut(s)	245
MseI	TTAA	1 cut(s)	699
Msp20I	TGGCCA	1 cut(s)	245
MspA1I	CMGCKG	2 cut(s)	313, 392
MspI	CCGG	5 cut(s)	24, 106, 278, 298, 350
MspR9I	CCNGG	2 cut(s)	299, 350
Mva1269I	GAATGC	2 cut(s)	553, 615
MvnI	CGCG	1 cut(s)	80
MwoI	GCNNNNNNNGC	2 cut(s)	86, 398
NaeI	GCCGGC	1 cut(s)	25
NciI	CCSGG	2 cut(s)	299, 350
NdeII	GATC	3 cut(s)	525, 561, 726
NgoMIV	GCCGGC	1 cut(s)	23
NlaIV	GGNNCC	2 cut(s)	795, 885
NmeAIII	GCCGAG	1 cut(s)	361
NmuCI	GTSAC	5 cut(s)	31, 64, 344, 647, 844
NsbI	TGCGCA	1 cut(s)	875
NspV	TTCGAA	2 cut(s)	509, 545
PctI	GAATGC	2 cut(s)	553, 615
PdiI	GCCGGC	1 cut(s)	25
PdmI	GAANNNNTTC	1 cut(s)	825
PfeI	GAWTC	5 cut(s)	207, 250, 493, 500, 769
PflFI	GACNNNGTC	1 cut(s)	350
PkrI	GCNGC	6 cut(s)	312, 315, 334, 403, 424, 865
PleI	GAGTC	3 cut(s)	51, 226, 523
PpsI	GAGTC	3 cut(s)	51, 226, 523
PshAI	GACNNNNGTC	1 cut(s)	667
PspN4I	GGNNCC	2 cut(s)	795, 885
PspPI	GGNCC	2 cut(s)	352, 883
PstI	CTGCAG	1 cut(s)	312
PsyI	GACNNNGTC	1 cut(s)	350
RsaI	GTAC	2 cut(s)	306, 413
RsaNI	GTAC	2 cut(s)	305, 412
Rsr2I	CGGWCCG	1 cut(s)	352
RsrII	CGGWCCG	1 cut(s)	352
SaqAI	TTAA	1 cut(s)	699
SatI	GCNGC	6 cut(s)	311, 314, 333, 402, 423, 864
Sau3AI	GATC	3 cut(s)	525, 561, 726
Sau96I	GGNCC	2 cut(s)	352, 883
SchI	GAGTC	3 cut(s)	52, 227, 524
ScrFI	CCNGG	2 cut(s)	299, 350
SetI	ASST	7 cut(s)	143, 383, 424, 632, 745, 851, 868
SfcI	CTRYAG	1 cut(s)	308
SfuI	TTCGAA	2 cut(s)	509, 545
SinI	GGWCC	1 cut(s)	352
SmlI	CTYRAG	1 cut(s)	7
SmoI	CTYRAG	1 cut(s)	7
Sse9I	AATT	3 cut(s)	480, 821, 833
SsiI	CCGC	6 cut(s)	227, 313, 355, 392, 401, 861
StyD4I	CCNGG	2 cut(s)	297, 348
TaaI	ACNGT	2 cut(s)	85, 844
TaiI	ACGT	1 cut(s)	851
TaqI	TCGA	6 cut(s)	210, 509, 524, 545, 560, 671
TaqII	GACCGA	1 cut(s)	149
TasI	AATT	3 cut(s)	480, 821, 833
TauI	GCSGC	2 cut(s)	316, 404
TfiI	GAWTC	5 cut(s)	207, 250, 493, 500, 769
Tru1I	TTAA	1 cut(s)	699
Tru9I	TTAA	1 cut(s)	699
TscAI	CASTG	1 cut(s)	40
TseFI	GTSAC	5 cut(s)	31, 64, 344, 647, 844
TseI	GCWGC	4 cut(s)	310, 332, 422, 863
Tsp45I	GTSAC	5 cut(s)	31, 64, 344, 647, 844
TspDTI	ATGAA	3 cut(s)	46, 699, 800
TspRI	CASTG	1 cut(s)	40
Tth111I	GACNNNGTC	1 cut(s)	350
VpaK11BI	GGWCC	1 cut(s)	352
XapI	RAATTY	1 cut(s)	480
XmnI	GAANNNNTTC	1 cut(s)	825

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.