Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

22540883 .. 22542310

Gene Structure 1428 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G183200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGAATCGAACCAAGTACACGGAGCATCGAAACGTCACAACCAAGTTCGTCAAGACGCTCACCAAGCATTCCCCAGAATCCAATATCGTAGCCCCCAAAATCGTACGGATTTCCTTCACCGACGGCGACGCCACCGACTCCTCCGGCGACGAGGGCGAAGAACGAATCGTCGTGAAGCGCACGATTAACGAAATCAGAATCGAAGACTGCAGTGCTCCGAGGCTCTTCTCCAAGCCTAAGGCTCCGAGGTGCAGAGCAAATGACGAAAGCAACAATGTTTCCCCGAACGGGAAGAAGTTCCGAGGCGTACGGCAGAGGCGGTGGGGGAGATGGGCGGCGGAGATCCGAAACCCGACTAGCCGGGCCCGGGTCTGGCTCGGAACGTTCGACACGGCGGAGGAGGCCGGTTTGGCGTACGACAGAGCCGCCATTGCGTTTAAAGGACATCTGGCCTTCACCAATTTCATCAAGCCACCCGAAATCGCCGTTCCGGCCACTCCGGACAACGACTGCAAACCGATTTCTTGGGAAACGTCCCCCAACGCTGCTGTGATCGGCGAGTGCGATCACAGTCTTCGTTCTCCGACCTCTGTTTTGAGCCCCGGTGAGGCCGAAATCGAGTGGAGACCGGTTGGGATTTCGGAGCGAGATGATTTCGGGGCGTTTGAGTCTGAGTTTTTGCTGAACGATTGTTTTGAACCGGAAGCTCCCGCGCCGATATTTTTCGACGAAATGAGAGTCGTACCGGAAATGCTGTTAAAAGATGAAGATTTCTCCGATTTGTCGCTCGATTTCCGGTCGTGTAAGTGGGATGACGTGGAGGATTACTTCGAAGGTGCTTGTGATGAAAGCGGTGCGCTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

288

Amino Acids

32.27

Weight (kDa)

4.95

Isoelectric Point (pI)

54.21

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	713
AccIII	TCCGGA	1 cut(s)	499
AciI	CCGC	7 cut(s)	319, 335, 338, 395, 426, 711, 852
AclI	AACGTT	1 cut(s)	383
AclWI	GGATC	1 cut(s)	337
AcoI	YGGCCR	1 cut(s)	492
AcyI	GRCGYC	1 cut(s)	129
AfaI	GTAC	5 cut(s)	17, 105, 309, 416, 744
AfiI	CCNNNNNNNGG	4 cut(s)	288, 367, 372, 607
AgeI	ACCGGT	1 cut(s)	628
AgsI	TTSAA	1 cut(s)	698
AjiI	CACGTC	1 cut(s)	817
AluBI	AGCT	1 cut(s)	707
AluI	AGCT	1 cut(s)	707
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	1 cut(s)	619
AlwI	GGATC	1 cut(s)	337
Ama87I	CYCGRG	1 cut(s)	366
Aor13HI	TCCGGA	1 cut(s)	499
AoxI	GGCC	5 cut(s)	363, 402, 450, 492, 609
ApaI	GGGCCC	1 cut(s)	367
ApeKI	GCWGC	1 cut(s)	545
ArsI	GACNNNNNNTTYG	4 cut(s)	577, 609, 723, 755
AsiGI	ACCGGT	1 cut(s)	628
Asp700I	GAANNNNTTC	1 cut(s)	296
AspLEI	GCGC	3 cut(s)	180, 715, 859
AspS9I	GGNCC	2 cut(s)	363, 364
AsuC2I	CCSGG	4 cut(s)	362, 367, 368, 603
AsuHPI	GGTGA	4 cut(s)	52, 109, 448, 617
AsuII	TTCGAA	1 cut(s)	831
AvaI	CYCGRG	1 cut(s)	366
AxyI	CCTNAGG	1 cut(s)	237
BaeGI	GKGCMC	1 cut(s)	367
BanII	GRGCYC	2 cut(s)	367, 602
BbsI	GAAGAC	2 cut(s)	210, 566
Bbv12I	GWGCWC	1 cut(s)	217
BbvI	GCAGC	1 cut(s)	532
BccI	CCATC	1 cut(s)	324
BceAI	ACGGC	4 cut(s)	139, 326, 408, 470
BcnI	CCSGG	4 cut(s)	362, 367, 368, 603
BcoDI	GTCTC	1 cut(s)	619
BfaI	CTAG	1 cut(s)	357
BfmI	CTRYAG	1 cut(s)	208
BglI	GCCNNNNNGGC	2 cut(s)	410, 491
BisI	GCNGC	3 cut(s)	336, 426, 546
BlsI	GCNGC	3 cut(s)	337, 427, 547
Bme1390I	CCNGG	4 cut(s)	362, 367, 368, 603
BmeT110I	CYCGRG	1 cut(s)	366
BmgBI	CACGTC	1 cut(s)	817
BmgT120I	GGNCC	2 cut(s)	363, 364
BmiI	GGNNCC	2 cut(s)	243, 365
BmrFI	CCNGG	4 cut(s)	362, 367, 368, 603
BmsI	GCATC	1 cut(s)	34
BpiI	GAAGAC	2 cut(s)	210, 566
Bpu14I	TTCGAA	1 cut(s)	831
BpuMI	CCSGG	4 cut(s)	362, 367, 368, 603
BsaHI	GRCGYC	1 cut(s)	129
BsaI	GGTCTC	1 cut(s)	619
BsaJI	CCNNGG	5 cut(s)	218, 245, 301, 366, 601
BsaWI	WCCGGW	5 cut(s)	499, 628, 700, 745, 795
Bsc4I	CCNNNNNNNGG	4 cut(s)	288, 367, 372, 607
Bse118I	RCCGGY	2 cut(s)	404, 628
Bse21I	CCTNAGG	1 cut(s)	237
Bse3DI	GCAATG	1 cut(s)	429
BseAI	TCCGGA	1 cut(s)	499
BseDI	CCNNGG	5 cut(s)	218, 245, 301, 366, 601
BseGI	GGATG	1 cut(s)	817
BseLI	CCNNNNNNNGG	4 cut(s)	288, 367, 372, 607
BseMI	GCAATG	1 cut(s)	429
BseMII	CTCAG	1 cut(s)	663
BseRI	GAGGAG	2 cut(s)	130, 413
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	532
BsgI	GTGCAG	1 cut(s)	271
Bsh1236I	CGCG	1 cut(s)	713
Bsh1285I	CGRYCG	1 cut(s)	800
BshFI	GGCC	5 cut(s)	365, 404, 452, 494, 611
BshTI	ACCGGT	1 cut(s)	628
BsiEI	CGRYCG	1 cut(s)	800
BsiHKAI	GWGCWC	1 cut(s)	217
BsiHKCI	CYCGRG	1 cut(s)	366
BsiWI	CGTACG	3 cut(s)	103, 307, 414
BslFI	GGGAC	1 cut(s)	520
BslI	CCNNNNNNNGG	4 cut(s)	288, 367, 372, 607
BsmAI	GTCTC	1 cut(s)	619
BsmFI	GGGAC	1 cut(s)	520
BsmI	GAATGC	1 cut(s)	67
BsnI	GGCC	5 cut(s)	365, 404, 452, 494, 611
Bso31I	GGTCTC	1 cut(s)	619
BsoBI	CYCGRG	1 cut(s)	366
Bsp119I	TTCGAA	1 cut(s)	831
Bsp120I	GGGCCC	1 cut(s)	363
Bsp1286I	GDGCHC	3 cut(s)	217, 367, 602
Bsp13I	TCCGGA	1 cut(s)	499
Bsp143I	GATC	3 cut(s)	342, 552, 565
BspACI	CCGC	7 cut(s)	319, 335, 338, 395, 426, 711, 852
BspANI	GGCC	5 cut(s)	365, 404, 452, 494, 611
BspCNI	CTCAG	1 cut(s)	664
BspEI	TCCGGA	1 cut(s)	499
BspFNI	CGCG	1 cut(s)	713
BspLI	GGNNCC	2 cut(s)	243, 365
BspMAI	CTGCAG	1 cut(s)	212
BspPI	GGATC	1 cut(s)	337
BspQI	GCTCTTC	1 cut(s)	230
BspT104I	TTCGAA	1 cut(s)	831
BspTNI	GGTCTC	1 cut(s)	619
BsrDI	GCAATG	1 cut(s)	429
BsrFI	RCCGGY	2 cut(s)	404, 628
BssAI	RCCGGY	2 cut(s)	404, 628
BssECI	CCNNGG	5 cut(s)	218, 245, 301, 366, 601
BssMI	GATC	3 cut(s)	342, 552, 565
BssNI	GRCGYC	1 cut(s)	129
Bst4CI	ACNGT	1 cut(s)	572
Bst6I	CTCTTC	1 cut(s)	230
BstACI	GRCGYC	1 cut(s)	129
BstBI	TTCGAA	1 cut(s)	831
BstDEI	CTNAG	2 cut(s)	237, 672
BstF5I	GGATG	1 cut(s)	817
BstFNI	CGCG	1 cut(s)	713
BstHHI	GCGC	3 cut(s)	180, 715, 859
BstKTI	GATC	3 cut(s)	345, 555, 568
BstMAI	GTCTC	1 cut(s)	619
BstMBI	GATC	3 cut(s)	342, 552, 565
BstMCI	CGRYCG	1 cut(s)	800
BstMWI	GCNNNNNNNGC	6 cut(s)	64, 153, 401, 410, 431, 491
BstSCI	CCNGG	4 cut(s)	360, 365, 366, 601
BstSFI	CTRYAG	1 cut(s)	208
BstSLI	GKGCMC	1 cut(s)	367
BstUI	CGCG	1 cut(s)	713
BstV1I	GCAGC	1 cut(s)	532
BstV2I	GAAGAC	2 cut(s)	210, 566
BstX2I	RGATCY	1 cut(s)	342
BstYI	RGATCY	1 cut(s)	342
Bsu36I	CCTNAGG	1 cut(s)	237
BsuRI	GGCC	5 cut(s)	365, 404, 452, 494, 611
BtrI	CACGTC	1 cut(s)	817
BtsCI	GGATG	1 cut(s)	817
BtsI	GCAGTG	1 cut(s)	217
BtsIMutI	CAGTG	1 cut(s)	217
CfoI	GCGC	3 cut(s)	180, 715, 859
Cfr10I	RCCGGY	2 cut(s)	404, 628
Cfr13I	GGNCC	2 cut(s)	363, 364
Cfr9I	CCCGGG	1 cut(s)	366
CseI	GACGC	2 cut(s)	64, 137
Csp6I	GTAC	5 cut(s)	16, 104, 308, 415, 743
CspAI	ACCGGT	1 cut(s)	628
CviQI	GTAC	5 cut(s)	16, 104, 308, 415, 743
DdeI	CTNAG	2 cut(s)	237, 672
DpnI	GATC	3 cut(s)	344, 554, 567
DpnII	GATC	3 cut(s)	342, 552, 565
DraI	TTTAAA	1 cut(s)	439
EaeI	YGGCCR	1 cut(s)	492
Eam1104I	CTCTTC	1 cut(s)	230
EarI	CTCTTC	1 cut(s)	230
EciI	GGCGGA	2 cut(s)	353, 410
Eco24I	GRGCYC	2 cut(s)	367, 602
Eco31I	GGTCTC	1 cut(s)	619
Eco81I	CCTNAGG	1 cut(s)	237
Eco88I	CYCGRG	1 cut(s)	366
EcoT38I	GRGCYC	2 cut(s)	367, 602
FaqI	GGGAC	1 cut(s)	520
FauI	CCCGC	1 cut(s)	718
Fnu4HI	GCNGC	3 cut(s)	336, 426, 546
FokI	GGATG	1 cut(s)	824
FriOI	GRGCYC	2 cut(s)	367, 602
Fsp4HI	GCNGC	3 cut(s)	336, 426, 546
FspBI	CTAG	1 cut(s)	357
GlaI	GCGC	3 cut(s)	179, 714, 858
GluI	GCNGC	3 cut(s)	336, 426, 546
HaeIII	GGCC	5 cut(s)	365, 404, 452, 494, 611
HgaI	GACGC	2 cut(s)	64, 137
HhaI	GCGC	3 cut(s)	180, 715, 859
Hin1I	GRCGYC	1 cut(s)	129
Hin6I	GCGC	3 cut(s)	178, 713, 857
HinP1I	GCGC	3 cut(s)	178, 713, 857
HinfI	GANTC	7 cut(s)	4, 77, 137, 165, 198, 668, 738
HphI	GGTGA	4 cut(s)	52, 109, 448, 617
Hpy166II	GTNNAC	1 cut(s)	18
Hpy188III	TCNNGA	3 cut(s)	52, 172, 500
Hpy8I	GTNNAC	1 cut(s)	18
Hpy99I	CGWCG	5 cut(s)	125, 131, 152, 173, 731
HpyAV	CCTTC	3 cut(s)	124, 463, 827
HpyCH4III	ACNGT	1 cut(s)	572
HpyCH4IV	ACGT	4 cut(s)	33, 383, 533, 816
HpyCH4V	TGCA	3 cut(s)	210, 252, 513
HpyF10VI	GCNNNNNNNGC	6 cut(s)	64, 153, 401, 410, 431, 491
HpyF3I	CTNAG	2 cut(s)	237, 672
HpySE526I	ACGT	4 cut(s)	33, 383, 533, 816
Hsp92I	GRCGYC	1 cut(s)	129
HspAI	GCGC	3 cut(s)	178, 713, 857
Kpn2I	TCCGGA	1 cut(s)	499
Kzo9I	GATC	3 cut(s)	342, 552, 565
LguI	GCTCTTC	1 cut(s)	230
LmnI	GCTCC	5 cut(s)	22, 220, 247, 643, 712
Lsp1109I	GCAGC	1 cut(s)	532
LweI	GCATC	1 cut(s)	34
MaeI	CTAG	1 cut(s)	357
MaeII	ACGT	4 cut(s)	33, 383, 533, 816
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	3 cut(s)	344, 554, 567
MboI	GATC	3 cut(s)	342, 552, 565
MboII	GAAGA	6 cut(s)	170, 215, 217, 304, 566, 779
MflI	RGATCY	1 cut(s)	342
MhlI	GDGCHC	3 cut(s)	217, 367, 602
MluCI	AATT	1 cut(s)	460
MlyI	GAGTC	3 cut(s)	131, 677, 747
MmeI	TCCRAC	1 cut(s)	608
MroI	TCCGGA	1 cut(s)	499
MroXI	GAANNNNTTC	1 cut(s)	296
MseI	TTAA	3 cut(s)	186, 438, 758
MspR9I	CCNGG	4 cut(s)	362, 367, 368, 603
Mva1269I	GAATGC	1 cut(s)	67
MvnI	CGCG	1 cut(s)	713
MwoI	GCNNNNNNNGC	6 cut(s)	64, 153, 401, 410, 431, 491
NciI	CCSGG	4 cut(s)	362, 367, 368, 603
NdeII	GATC	3 cut(s)	342, 552, 565
NlaIV	GGNNCC	2 cut(s)	243, 365
NmuCI	GTSAC	1 cut(s)	34
NspV	TTCGAA	1 cut(s)	831
PciSI	GCTCTTC	1 cut(s)	230
PcsI	WCGNNNNNNNCGW	2 cut(s)	384, 561
PctI	GAATGC	1 cut(s)	67
PdmI	GAANNNNTTC	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	4, 77, 165, 198
Pfl23II	CGTACG	3 cut(s)	103, 307, 414
PinAI	ACCGGT	1 cut(s)	628
PkrI	GCNGC	3 cut(s)	337, 427, 547
PleI	GAGTC	3 cut(s)	131, 676, 746
PpsI	GAGTC	3 cut(s)	131, 676, 746
Psp1406I	AACGTT	1 cut(s)	383
PspLI	CGTACG	3 cut(s)	103, 307, 414
PspN4I	GGNNCC	2 cut(s)	243, 365
PspOMI	GGGCCC	1 cut(s)	363
PspPI	GGNCC	2 cut(s)	363, 364
PstI	CTGCAG	1 cut(s)	212
PsuI	RGATCY	1 cut(s)	342
RsaI	GTAC	5 cut(s)	17, 105, 309, 416, 744
RsaNI	GTAC	5 cut(s)	16, 104, 308, 415, 743
SapI	GCTCTTC	1 cut(s)	230
SaqAI	TTAA	3 cut(s)	186, 438, 758
SatI	GCNGC	3 cut(s)	336, 426, 546
Sau3AI	GATC	3 cut(s)	342, 552, 565
Sau96I	GGNCC	2 cut(s)	363, 364
SchI	GAGTC	3 cut(s)	131, 677, 747
ScrFI	CCNGG	4 cut(s)	362, 367, 368, 603
SduI	GDGCHC	3 cut(s)	217, 367, 602
SetI	ASST	8 cut(s)	36, 251, 386, 536, 590, 709, 819, 838
SfaNI	GCATC	1 cut(s)	34
SfcI	CTRYAG	1 cut(s)	208
SfuI	TTCGAA	1 cut(s)	831
SmaI	CCCGGG	1 cut(s)	368
Sse9I	AATT	1 cut(s)	460
SsiI	CCGC	7 cut(s)	319, 335, 338, 395, 426, 711, 852
SspMI	CTAG	1 cut(s)	357
StyD4I	CCNGG	4 cut(s)	360, 365, 366, 601
TaaI	ACNGT	1 cut(s)	572
TaiI	ACGT	4 cut(s)	36, 386, 536, 819
TaqI	TCGA	8 cut(s)	7, 28, 201, 387, 618, 726, 789, 831
TasI	AATT	1 cut(s)	460
TatI	WGTACW	1 cut(s)	15
TauI	GCSGC	2 cut(s)	338, 428
TfiI	GAWTC	4 cut(s)	4, 77, 165, 198
Tru1I	TTAA	3 cut(s)	186, 438, 758
Tru9I	TTAA	3 cut(s)	186, 438, 758
TscAI	CASTG	1 cut(s)	217
TseFI	GTSAC	1 cut(s)	34
TseI	GCWGC	1 cut(s)	545
Tsp45I	GTSAC	1 cut(s)	34
TspDTI	ATGAA	4 cut(s)	17, 454, 780, 861
TspGWI	ACGGA	2 cut(s)	35, 121
TspMI	CCCGGG	1 cut(s)	366
TspRI	CASTG	1 cut(s)	217
XmaI	CCCGGG	1 cut(s)	366
XmnI	GAANNNNTTC	1 cut(s)	296
XspI	CTAG	1 cut(s)	357

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.