Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

22804998 .. 22806527

Gene Structure 1530 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G61630.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 948 bp

ATGGAGAGACGAACGAGACGAGTGAAGTTCACAGAGAATCGTACGGTCACAAACGTAGCAGCTACACCATCTAACGGGTCTCCGAGACTGGTCCGTATCACTGTTACTGATCCTTTCGCTACTGACTCGTCTAGCGACGACGACGACAACAACAACGTCACGGTGGTTCCAAGAGTGAAACGATACGTGAAGGAGATTAGATTCTGCCAAGGTGAATCTTCTTCCTCCACCGCGGCGAGGAAAGGTAAGCACAAGGAGGAGGAAAGCGTAGTGGTTGAAGATGACGTGTCGACGTCGGTGAAGCCTAAAAAGTACAGAGGCGTGAGACAGAGACCTTGGGGAAAATTCGCGGCGGAGATTAGAGATCCGTCGAGCCGTACTCGGATTTGGCTTGGGACTTTTGTCACGGCGGAGGAAGCTGCTATAGCGTACGATAGAGCCGCGATTCATCTCAAAGGACCTAAAGCGCTCACGAATTTCCTAACTCCGCCGACGCCAACGCCGGTTATCGATCTCCAAACGGTTTCCGCCTGCGATTACGGTAGAGATTCTCGGCAGAGCCTTCATTCACCGACCTCTGTTCTAAGATTCAACGTCAACGAGGAAACAGAGCATGAGATTGAAGCGATCGAGCTATCTCCGGAGAGAAAGTCGACGGTTATAAAAGAAGAAGAAGAATCGTCGGCGGGTTTGGTGTTCCCGGATCCGTATCTGTTACCGGATTTATCTCTCGCCGGCGAATGTTTTTGGGATACCGAAATTGCCCCTGACCTTTTGTTTCTCGATGAAGAAACCAAAATCCAATCAACGTTGTTACCAAACACAGAGGTTTCGAAACAAGGAGAAAACGAAACTGAAGATTTCGAGTTTGGTTTGATTGATGATTTCGAGTCTTCTCCATGGGATGTGGATCATTTCTTCGACCATCATCATCACTCTTTCGATTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044424 GO:0044464 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0097159 GO:0099402 GO:0140110 GO:1901363 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

315

Amino Acids

35.57

Weight (kDa)

4.95

Isoelectric Point (pI)

56.11

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	104 - 153	1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	662
AatII	GACGTC	1 cut(s)	296
AccI	GTMKAC	2 cut(s)	290, 653
AccII	CGCG	3 cut(s)	233, 350, 443
AccIII	TCCGGA	1 cut(s)	640
AciI	CCGC	9 cut(s)	231, 233, 350, 353, 410, 441, 488, 528, 686
AclI	AACGTT	1 cut(s)	809
AclWI	GGATC	5 cut(s)	104, 359, 698, 711, 918
AcsI	RAATTY	2 cut(s)	344, 475
AcuI	CTGAAG	1 cut(s)	876
AcyI	GRCGYC	2 cut(s)	293, 494
AfaI	GTAC	4 cut(s)	43, 314, 379, 431
AfeI	AGCGCT	1 cut(s)	468
AfiI	CCNNNNNNNGG	2 cut(s)	74, 237
AflIII	ACRYGT	1 cut(s)	285
AgsI	TTSAA	3 cut(s)	278, 592, 623
AjiI	CACGTC	1 cut(s)	286
AluBI	AGCT	3 cut(s)	62, 419, 634
AluI	AGCT	3 cut(s)	62, 419, 634
Alw26I	GTCTC	5 cut(s)	10, 79, 84, 319, 325
AlwI	GGATC	5 cut(s)	104, 359, 698, 711, 918
Aor13HI	TCCGGA	1 cut(s)	640
Aor51HI	AGCGCT	1 cut(s)	468
ApeKI	GCWGC	2 cut(s)	59, 419
ApoI	RAATTY	2 cut(s)	344, 475
AspLEI	GCGC	1 cut(s)	469
AspS9I	GGNCC	2 cut(s)	91, 458
AsuC2I	CCSGG	1 cut(s)	701
AsuHPI	GGTGA	3 cut(s)	224, 310, 561
AsuII	TTCGAA	1 cut(s)	833
AvaII	GGWCC	2 cut(s)	91, 458
BamHI	GGATCC	1 cut(s)	703
BbsI	GAAGAC	1 cut(s)	885
BbvI	GCAGC	2 cut(s)	71, 406
BccI	CCATC	2 cut(s)	76, 933
BceAI	ACGGC	2 cut(s)	360, 423
BciVI	GTATCC	1 cut(s)	745
BcnI	CCSGG	1 cut(s)	701
BcoDI	GTCTC	5 cut(s)	10, 79, 84, 319, 325
BfaI	CTAG	1 cut(s)	132
BfmI	CTRYAG	1 cut(s)	423
BfoI	RGCGCY	1 cut(s)	470
BfuI	GTATCC	1 cut(s)	745
BisI	GCNGC	5 cut(s)	60, 234, 351, 420, 441
BlsI	GCNGC	5 cut(s)	61, 235, 352, 421, 442
Bme1390I	CCNGG	1 cut(s)	701
Bme18I	GGWCC	2 cut(s)	91, 458
BmgBI	CACGTC	1 cut(s)	286
BmgT120I	GGNCC	2 cut(s)	91, 458
BmiI	GGNNCC	2 cut(s)	168, 705
BmrFI	CCNGG	1 cut(s)	701
BoxI	GACNNNNGTC	1 cut(s)	401
BpiI	GAAGAC	1 cut(s)	885
BplI	GAGNNNNNCTC	2 cut(s)	364, 396
Bpu14I	TTCGAA	1 cut(s)	833
BpuMI	CCSGG	1 cut(s)	701
Bsa29I	ATCGAT	1 cut(s)	510
BsaAI	YACGTR	1 cut(s)	187
BsaBI	GATNNNNATC	2 cut(s)	708, 909
BsaHI	GRCGYC	2 cut(s)	293, 494
BsaI	GGTCTC	2 cut(s)	84, 325
BsaJI	CCNNGG	4 cut(s)	208, 231, 335, 899
BsaWI	WCCGGW	2 cut(s)	640, 718
BsaXI	ACNNNNNCTCC	2 cut(s)	635, 665
Bsc4I	CCNNNNNNNGG	2 cut(s)	74, 237
Bse118I	RCCGGY	2 cut(s)	502, 734
Bse1I	ACTGG	1 cut(s)	93
Bse8I	GATNNNNATC	2 cut(s)	708, 909
BseAI	TCCGGA	1 cut(s)	640
BseCI	ATCGAT	1 cut(s)	510
BseDI	CCNNGG	4 cut(s)	208, 231, 335, 899
BseGI	GGATG	1 cut(s)	910
BseJI	GATNNNNATC	2 cut(s)	708, 909
BseLI	CCNNNNNNNGG	2 cut(s)	74, 237
BseNI	ACTGG	1 cut(s)	93
BseRI	GAGGAG	1 cut(s)	272
BseXI	GCAGC	2 cut(s)	71, 406
Bsh1236I	CGCG	3 cut(s)	233, 350, 443
Bsh1285I	CGRYCG	1 cut(s)	630
BshVI	ATCGAT	1 cut(s)	510
BsiEI	CGRYCG	1 cut(s)	630
BsiSI	CCGG	5 cut(s)	503, 641, 701, 719, 735
BsiWI	CGTACG	2 cut(s)	41, 429
BslFI	GGGAC	1 cut(s)	409
BslI	CCNNNNNNNGG	2 cut(s)	74, 237
BsmAI	GTCTC	5 cut(s)	10, 79, 84, 319, 325
BsmBI	CGTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	409
Bso31I	GGTCTC	2 cut(s)	84, 325
Bsp119I	TTCGAA	1 cut(s)	833
Bsp13I	TCCGGA	1 cut(s)	640
Bsp143I	GATC	6 cut(s)	109, 364, 511, 627, 703, 910
Bsp19I	CCATGG	1 cut(s)	899
BspACI	CCGC	9 cut(s)	231, 233, 350, 353, 410, 441, 488, 528, 686
BspDI	ATCGAT	1 cut(s)	510
BspEI	TCCGGA	1 cut(s)	640
BspFNI	CGCG	3 cut(s)	233, 350, 443
BspLI	GGNNCC	2 cut(s)	168, 705
BspPI	GGATC	5 cut(s)	104, 359, 698, 711, 918
BspT104I	TTCGAA	1 cut(s)	833
BspTNI	GGTCTC	2 cut(s)	84, 325
BsrFI	RCCGGY	2 cut(s)	502, 734
BsrI	ACTGG	1 cut(s)	93
BssAI	RCCGGY	2 cut(s)	502, 734
BssECI	CCNNGG	4 cut(s)	208, 231, 335, 899
BssMI	GATC	6 cut(s)	109, 364, 511, 627, 703, 910
BssNI	GRCGYC	2 cut(s)	293, 494
BssT1I	CCWWGG	3 cut(s)	208, 335, 899
Bst4CI	ACNGT	6 cut(s)	46, 103, 163, 523, 542, 658
BstACI	GRCGYC	2 cut(s)	293, 494
BstBAI	YACGTR	1 cut(s)	187
BstBI	TTCGAA	1 cut(s)	833
BstC8I	GCNNGC	2 cut(s)	532, 736
BstDEI	CTNAG	1 cut(s)	584
BstDSI	CCRYGG	2 cut(s)	231, 899
BstF5I	GGATG	1 cut(s)	910
BstFNI	CGCG	3 cut(s)	233, 350, 443
BstH2I	RGCGCY	1 cut(s)	470
BstHHI	GCGC	1 cut(s)	469
BstKTI	GATC	6 cut(s)	112, 367, 514, 630, 706, 913
BstMAI	GTCTC	5 cut(s)	10, 79, 84, 319, 325
BstMBI	GATC	6 cut(s)	109, 364, 511, 627, 703, 910
BstMCI	CGRYCG	1 cut(s)	630
BstMWI	GCNNNNNNNGC	2 cut(s)	416, 425
BstPAI	GACNNNNGTC	1 cut(s)	401
BstSCI	CCNGG	1 cut(s)	699
BstSFI	CTRYAG	1 cut(s)	423
BstUI	CGCG	3 cut(s)	233, 350, 443
BstV1I	GCAGC	2 cut(s)	71, 406
BstV2I	GAAGAC	1 cut(s)	885
BstX2I	RGATCY	2 cut(s)	364, 703
BstYI	RGATCY	2 cut(s)	364, 703
Bsu15I	ATCGAT	1 cut(s)	510
BsuI	GTATCC	1 cut(s)	745
BsuTUI	ATCGAT	1 cut(s)	510
BtgI	CCRYGG	2 cut(s)	231, 899
BtrI	CACGTC	1 cut(s)	286
BtsCI	GGATG	1 cut(s)	910
BtsIMutI	CAGTG	1 cut(s)	99
Cac8I	GCNNGC	2 cut(s)	532, 736
CfoI	GCGC	1 cut(s)	469
Cfr10I	RCCGGY	2 cut(s)	502, 734
Cfr13I	GGNCC	2 cut(s)	91, 458
Cfr42I	CCGCGG	1 cut(s)	234
ClaI	ATCGAT	1 cut(s)	510
CseI	GACGC	1 cut(s)	502
Csp6I	GTAC	4 cut(s)	42, 313, 378, 430
CviAII	CATG	2 cut(s)	614, 900
CviJI	RGCY	8 cut(s)	62, 304, 375, 391, 419, 440, 561, 634
CviKI_1	RGCY	8 cut(s)	62, 304, 375, 391, 419, 440, 561, 634
CviQI	GTAC	4 cut(s)	42, 313, 378, 430
DdeI	CTNAG	1 cut(s)	584
DpnI	GATC	6 cut(s)	111, 366, 513, 629, 705, 912
DpnII	GATC	6 cut(s)	109, 364, 511, 627, 703, 910
EciI	GGCGGA	4 cut(s)	368, 425, 477, 517
Eco130I	CCWWGG	3 cut(s)	208, 335, 899
Eco31I	GGTCTC	2 cut(s)	84, 325
Eco47I	GGWCC	2 cut(s)	91, 458
Eco47III	AGCGCT	1 cut(s)	468
Eco57I	CTGAAG	1 cut(s)	876
EcoO109I	RGGNCCY	1 cut(s)	458
EcoT14I	CCWWGG	3 cut(s)	208, 335, 899
ErhI	CCWWGG	3 cut(s)	208, 335, 899
Esp3I	CGTCTC	1 cut(s)	10
FaeI	CATG	2 cut(s)	617, 903
FaiI	YATR	4 cut(s)	425, 615, 662, 901
FaqI	GGGAC	1 cut(s)	409
FatI	CATG	2 cut(s)	613, 899
FauI	CCCGC	1 cut(s)	679
FblI	GTMKAC	2 cut(s)	290, 653
Fnu4HI	GCNGC	5 cut(s)	60, 234, 351, 420, 441
FokI	GGATG	1 cut(s)	917
Fsp4HI	GCNGC	5 cut(s)	60, 234, 351, 420, 441
FspBI	CTAG	1 cut(s)	132
GlaI	GCGC	1 cut(s)	468
GluI	GCNGC	5 cut(s)	60, 234, 351, 420, 441
HaeII	RGCGCY	1 cut(s)	470
HapII	CCGG	5 cut(s)	503, 641, 701, 719, 735
HgaI	GACGC	1 cut(s)	502
HhaI	GCGC	1 cut(s)	469
Hin1I	GRCGYC	2 cut(s)	293, 494
Hin1II	CATG	2 cut(s)	617, 903
Hin6I	GCGC	1 cut(s)	467
HinP1I	GCGC	1 cut(s)	467
HincII	GTYRAC	3 cut(s)	291, 598, 654
HindII	GTYRAC	3 cut(s)	291, 598, 654
HinfI	GANTC	9 cut(s)	37, 125, 201, 215, 445, 548, 588, 677, 890
HpaII	CCGG	5 cut(s)	503, 641, 701, 719, 735
HphI	GGTGA	3 cut(s)	224, 310, 561
Hpy166II	GTNNAC	4 cut(s)	30, 291, 598, 654
Hpy188I	TCNGA	2 cut(s)	84, 384
Hpy188III	TCNNGA	3 cut(s)	472, 641, 782
Hpy8I	GTNNAC	4 cut(s)	30, 291, 598, 654
Hpy99I	CGWCG	9 cut(s)	140, 143, 146, 295, 298, 373, 496, 658, 685
HpyAV	CCTTC	2 cut(s)	184, 572
HpyCH4III	ACNGT	6 cut(s)	46, 103, 163, 523, 542, 658
HpyCH4IV	ACGT	7 cut(s)	54, 156, 186, 285, 293, 594, 809
HpyF10VI	GCNNNNNNNGC	2 cut(s)	416, 425
HpyF3I	CTNAG	1 cut(s)	584
HpySE526I	ACGT	7 cut(s)	54, 156, 186, 285, 293, 594, 809
Hsp92I	GRCGYC	2 cut(s)	293, 494
Hsp92II	CATG	2 cut(s)	617, 903
HspAI	GCGC	1 cut(s)	467
Kpn2I	TCCGGA	1 cut(s)	640
KroI	GCCGGC	1 cut(s)	734
KroNI	GCCGGC	1 cut(s)	736
KspI	CCGCGG	1 cut(s)	234
Kzo9I	GATC	6 cut(s)	109, 364, 511, 627, 703, 910
LpnPI	CCDG	8 cut(s)	74, 516, 544, 654, 714, 732, 748, 780
Lsp1109I	GCAGC	2 cut(s)	71, 406
MaeI	CTAG	1 cut(s)	132
MaeII	ACGT	7 cut(s)	54, 156, 186, 285, 293, 594, 809
MaeIII	GTNAC	6 cut(s)	46, 103, 157, 403, 714, 813
MalI	GATC	6 cut(s)	111, 366, 513, 629, 705, 912
MboI	GATC	6 cut(s)	109, 364, 511, 627, 703, 910
MflI	RGATCY	2 cut(s)	364, 703
MluCI	AATT	3 cut(s)	344, 475, 759
MlyI	GAGTC	2 cut(s)	119, 899
MnlI	CCTC	9 cut(s)	231, 235, 250, 253, 311, 406, 586, 595, 820
MreI	CGCCGGCG	1 cut(s)	734
MroI	TCCGGA	1 cut(s)	640
MroNI	GCCGGC	1 cut(s)	734
MseI	TTAA	1 cut(s)	946
MspA1I	CMGCKG	1 cut(s)	233
MspI	CCGG	5 cut(s)	503, 641, 701, 719, 735
MspR9I	CCNGG	1 cut(s)	701
MvnI	CGCG	3 cut(s)	233, 350, 443
MwoI	GCNNNNNNNGC	2 cut(s)	416, 425
NaeI	GCCGGC	1 cut(s)	736
NciI	CCSGG	1 cut(s)	701
NcoI	CCATGG	1 cut(s)	899
NdeII	GATC	6 cut(s)	109, 364, 511, 627, 703, 910
NgoMIV	GCCGGC	1 cut(s)	734
NlaIII	CATG	2 cut(s)	617, 903
NlaIV	GGNNCC	2 cut(s)	168, 705
NmeAIII	GCCGAG	1 cut(s)	532
NmuCI	GTSAC	3 cut(s)	46, 157, 403
NspV	TTCGAA	1 cut(s)	833
PcsI	WCGNNNNNNNCGW	1 cut(s)	16
PdiI	GCCGGC	1 cut(s)	736
PfeI	GAWTC	7 cut(s)	37, 201, 215, 445, 548, 588, 677
Pfl23II	CGTACG	2 cut(s)	41, 429
PfoI	TCCNGGA	1 cut(s)	699
PkrI	GCNGC	5 cut(s)	61, 235, 352, 421, 442
Ple19I	CGATCG	1 cut(s)	630
PleI	GAGTC	2 cut(s)	119, 898
PpsI	GAGTC	2 cut(s)	119, 898
Ppu21I	YACGTR	1 cut(s)	187
PpuMI	RGGWCCY	1 cut(s)	458
PshAI	GACNNNNGTC	1 cut(s)	401
PsiI	TTATAA	1 cut(s)	662
Psp1406I	AACGTT	1 cut(s)	809
Psp5II	RGGWCCY	1 cut(s)	458
PspLI	CGTACG	2 cut(s)	41, 429
PspN4I	GGNNCC	2 cut(s)	168, 705
PspPI	GGNCC	2 cut(s)	91, 458
PspPPI	RGGWCCY	1 cut(s)	458
PsuI	RGATCY	2 cut(s)	364, 703
PvuI	CGATCG	1 cut(s)	630
RsaI	GTAC	4 cut(s)	43, 314, 379, 431
RsaNI	GTAC	4 cut(s)	42, 313, 378, 430
SacII	CCGCGG	1 cut(s)	234
SalI	GTCGAC	2 cut(s)	289, 652
SaqAI	TTAA	1 cut(s)	946
SatI	GCNGC	5 cut(s)	60, 234, 351, 420, 441
Sau3AI	GATC	6 cut(s)	109, 364, 511, 627, 703, 910
Sau96I	GGNCC	2 cut(s)	91, 458
SchI	GAGTC	2 cut(s)	119, 899
ScrFI	CCNGG	1 cut(s)	701
SfcI	CTRYAG	1 cut(s)	423
Sfr303I	CCGCGG	1 cut(s)	234
SfuI	TTCGAA	1 cut(s)	833
SgrAI	CRCCGGYG	1 cut(s)	734
SgrBI	CCGCGG	1 cut(s)	234
SinI	GGWCC	2 cut(s)	91, 458
Sse9I	AATT	3 cut(s)	344, 475, 759
SsiI	CCGC	9 cut(s)	231, 233, 350, 353, 410, 441, 488, 528, 686
SspMI	CTAG	1 cut(s)	132
StyD4I	CCNGG	1 cut(s)	699
StyI	CCWWGG	3 cut(s)	208, 335, 899
TaaI	ACNGT	6 cut(s)	46, 103, 163, 523, 542, 658
TaiI	ACGT	7 cut(s)	57, 159, 189, 288, 296, 597, 812
TasI	AATT	3 cut(s)	344, 475, 759
TatI	WGTACW	1 cut(s)	312
TauI	GCSGC	3 cut(s)	236, 353, 443
TfiI	GAWTC	7 cut(s)	37, 201, 215, 445, 548, 588, 677
Tru1I	TTAA	1 cut(s)	946
Tru9I	TTAA	1 cut(s)	946
TscAI	CASTG	1 cut(s)	106
TseFI	GTSAC	3 cut(s)	46, 157, 403
TseI	GCWGC	2 cut(s)	59, 419
Tsp45I	GTSAC	3 cut(s)	46, 157, 403
TspDTI	ATGAA	3 cut(s)	437, 554, 801
TspGWI	ACGGA	3 cut(s)	83, 357, 696
TspRI	CASTG	1 cut(s)	106
VpaK11BI	GGWCC	2 cut(s)	91, 458
XapI	RAATTY	2 cut(s)	344, 475
XmiI	GTMKAC	2 cut(s)	290, 653
XspI	CTAG	1 cut(s)	132
ZraI	GACGTC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.