Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

13694372 .. 13695814

Gene Structure 1443 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g15860.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 909 bp

ATGGATTCAAGCCACCCAACAACCAAGTTCACAGAGAAGAGATTCGTCACTGACAAGCTTGTCAAGCCTTTGCGCCACCTTGCACTCCCCAAAATCGTCCGGATTTCCTTCACTGATCAGGACGCAACCGACACCTCCAGCGACGACGAAGAACAACAACAACAACAACGCGTGACGAGAAGAGTGATCAACGAGGTGAGAATAGAGGAGTCAGAAGCTGTGAGAGTCTTGCTAGCCAAGAATCAGCAGCAAAAGCCGATTAATTCATTGCCGGAGGAGAAGAAGAAATTCCGGGGAGTAAGGCAGCGGCCGTGGGGCAAATGGGCCGCCGAGATTCGAGACCCGTTACTGAAGTCGAAGAGAAGGTGGCTCGGAACTTTCAACACGGCTGAGGAGGCAGCTTTGAGGTATGACAGGGAAGCCATTGAGCTGAGAGGTCCTAACGCTCGAACCAATATCATTCCCCCTCCTAAATTCCCCGTTTCCGATCACCGTTCTTCTTCTAACGAGTCCATCTCGATCAATCTTTCTAGTTCGAATCTCTGTTCTTCGAATATGTCCACTTCGATGGACCAGATTGTTGTCATTGATGAGTATGATTCCGGGAAAGAGTGTCAGAGCAACATTCGCTCCCCAACCTCGGTTCTCAGCAGCAGTGACAACGAGTGGAGACCTGTTTCGAAGGAAAAAGATGAAAGCCACTTCGTTGGTTACTTTGATGGTGTGATCAATCCTGAAGCTATATTGTTTGGGATTTCGGAGCCGACTCTGTGGGAGGAAATGAACATGGTGCCGGAGACAATGTTGCGAGAAGATTTGTCCGACATTTCGCTGGATTCTGTTGGGGATTTCAGGTCATGTAAATGGAATGCGGAAGATTTCTTTCAAGATCAATGTGGTGGCTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

303

Amino Acids

34.56

Weight (kDa)

5.28

Isoelectric Point (pI)

66.57

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	96 - 146	1.1e-12	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	59
AccB1I	GGYRCC	1 cut(s)	790
AccII	CGCG	1 cut(s)	171
AccIII	TCCGGA	1 cut(s)	99
AciI	CCGC	3 cut(s)	307, 327, 872
AcoI	YGGCCR	1 cut(s)	308
AcsI	RAATTY	2 cut(s)	287, 473
AcuI	CTGAAG	2 cut(s)	371, 756
AfiI	CCNNNNNNNGG	1 cut(s)	640
AflIII	ACRYGT	1 cut(s)	169
AgsI	TTSAA	3 cut(s)	9, 382, 887
AluBI	AGCT	5 cut(s)	58, 218, 401, 430, 740
AluI	AGCT	5 cut(s)	58, 218, 401, 430, 740
Alw26I	GTCTC	3 cut(s)	333, 664, 791
AlwNI	CAGNNNCTG	1 cut(s)	218
Aor13HI	TCCGGA	1 cut(s)	99
AoxI	GGCC	2 cut(s)	308, 324
ApeKI	GCWGC	4 cut(s)	247, 304, 398, 651
ApoI	RAATTY	2 cut(s)	287, 473
AseI	ATTAAT	1 cut(s)	261
Asp700I	GAANNNNTTC	2 cut(s)	41, 287
AspLEI	GCGC	1 cut(s)	75
AspS9I	GGNCC	3 cut(s)	324, 437, 571
AsuC2I	CCSGG	2 cut(s)	293, 604
AsuHPI	GGTGA	2 cut(s)	208, 482
AsuII	TTCGAA	3 cut(s)	536, 551, 680
AsuNHI	GCTAGC	1 cut(s)	232
AvaII	GGWCC	2 cut(s)	437, 571
BanI	GGYRCC	1 cut(s)	790
BbvCI	CCTCAGC	1 cut(s)	390
BbvI	GCAGC	4 cut(s)	259, 316, 410, 663
BccI	CCATC	3 cut(s)	521, 562, 713
BceAI	ACGGC	2 cut(s)	295, 402
BclI	TGATCA	3 cut(s)	115, 186, 726
BcnI	CCSGG	2 cut(s)	293, 604
BcoDI	GTCTC	3 cut(s)	333, 664, 791
BfaI	CTAG	2 cut(s)	233, 531
BisI	GCNGC	6 cut(s)	248, 305, 308, 327, 399, 652
BlsI	GCNGC	6 cut(s)	249, 306, 309, 328, 400, 653
Bme1390I	CCNGG	2 cut(s)	293, 604
Bme18I	GGWCC	2 cut(s)	437, 571
BmgT120I	GGNCC	3 cut(s)	324, 437, 571
BmiI	GGNNCC	2 cut(s)	762, 792
BmrFI	CCNGG	2 cut(s)	293, 604
BmtI	GCTAGC	1 cut(s)	236
BplI	GAGNNNNNCTC	2 cut(s)	500, 532
BpmI	CTGGAG	1 cut(s)	121
Bpu10I	CCTNAGC	1 cut(s)	390
Bpu14I	TTCGAA	3 cut(s)	536, 551, 680
BpuMI	CCSGG	2 cut(s)	293, 604
BsaI	GGTCTC	2 cut(s)	333, 664
BsaJI	CCNNGG	3 cut(s)	292, 311, 639
BsaWI	WCCGGW	1 cut(s)	99
BsaXI	ACNNNNNCTCC	4 cut(s)	614, 644, 788, 818
Bsc4I	CCNNNNNNNGG	1 cut(s)	640
Bse3DI	GCAATG	1 cut(s)	266
BseAI	TCCGGA	1 cut(s)	99
BseDI	CCNNGG	3 cut(s)	292, 311, 639
BseLI	CCNNNNNNNGG	1 cut(s)	640
BseMI	GCAATG	1 cut(s)	266
BseMII	CTCAG	3 cut(s)	381, 422, 661
BseRI	GAGGAG	3 cut(s)	221, 290, 407
BseX3I	CGGCCG	1 cut(s)	308
BseXI	GCAGC	4 cut(s)	259, 316, 410, 663
Bsh1236I	CGCG	1 cut(s)	171
Bsh1285I	CGRYCG	1 cut(s)	311
BshFI	GGCC	2 cut(s)	310, 326
BshNI	GGYRCC	1 cut(s)	790
BsiEI	CGRYCG	1 cut(s)	311
BsiSI	CCGG	5 cut(s)	100, 272, 292, 603, 794
BslI	CCNNNNNNNGG	1 cut(s)	640
BsmAI	GTCTC	3 cut(s)	333, 664, 791
BsmI	GAATGC	1 cut(s)	874
BsnI	GGCC	2 cut(s)	310, 326
Bso31I	GGTCTC	2 cut(s)	333, 664
Bsp119I	TTCGAA	3 cut(s)	536, 551, 680
Bsp13I	TCCGGA	1 cut(s)	99
Bsp143I	GATC	6 cut(s)	115, 186, 487, 519, 726, 889
BspACI	CCGC	3 cut(s)	307, 327, 872
BspANI	GGCC	2 cut(s)	310, 326
BspCNI	CTCAG	3 cut(s)	382, 423, 660
BspEI	TCCGGA	1 cut(s)	99
BspFNI	CGCG	1 cut(s)	171
BspLI	GGNNCC	2 cut(s)	762, 792
BspOI	GCTAGC	1 cut(s)	236
BspT104I	TTCGAA	3 cut(s)	536, 551, 680
BspT107I	GGYRCC	1 cut(s)	790
BspTNI	GGTCTC	2 cut(s)	333, 664
BsrDI	GCAATG	1 cut(s)	266
BssECI	CCNNGG	3 cut(s)	292, 311, 639
BssMI	GATC	6 cut(s)	115, 186, 487, 519, 726, 889
Bst4CI	ACNGT	1 cut(s)	494
Bst6I	CTCTTC	3 cut(s)	32, 175, 353
BstBI	TTCGAA	3 cut(s)	536, 551, 680
BstC8I	GCNNGC	1 cut(s)	234
BstDEI	CTNAG	3 cut(s)	390, 431, 647
BstDSI	CCRYGG	1 cut(s)	311
BstFNI	CGCG	1 cut(s)	171
BstHHI	GCGC	1 cut(s)	75
BstKTI	GATC	6 cut(s)	118, 189, 490, 522, 729, 892
BstMAI	GTCTC	3 cut(s)	333, 664, 791
BstMBI	GATC	6 cut(s)	115, 186, 487, 519, 726, 889
BstMCI	CGRYCG	1 cut(s)	311
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 253, 395, 627
BstSCI	CCNGG	2 cut(s)	291, 602
BstUI	CGCG	1 cut(s)	171
BstV1I	GCAGC	4 cut(s)	259, 316, 410, 663
BstXI	CCANNNNNNTGG	2 cut(s)	568, 707
BstZI	CGGCCG	1 cut(s)	308
BsuRI	GGCC	2 cut(s)	310, 326
BtgI	CCRYGG	1 cut(s)	311
BtsI	GCAGTG	1 cut(s)	661
BtsIMutI	CAGTG	3 cut(s)	48, 111, 661
Cac8I	GCNNGC	1 cut(s)	234
CaiI	CAGNNNCTG	1 cut(s)	218
CfoI	GCGC	1 cut(s)	75
Cfr13I	GGNCC	3 cut(s)	324, 437, 571
CseI	GACGC	1 cut(s)	131
CviAII	CATG	2 cut(s)	787, 858
DdeI	CTNAG	3 cut(s)	390, 431, 647
DpnI	GATC	6 cut(s)	117, 188, 489, 521, 728, 891
DpnII	GATC	6 cut(s)	115, 186, 487, 519, 726, 889
DrdI	GACNNNNNNGTC	1 cut(s)	59
DseDI	GACNNNNNNGTC	1 cut(s)	59
EaeI	YGGCCR	1 cut(s)	308
EagI	CGGCCG	1 cut(s)	308
Eam1104I	CTCTTC	3 cut(s)	32, 175, 353
EarI	CTCTTC	3 cut(s)	32, 175, 353
EclXI	CGGCCG	1 cut(s)	308
Eco31I	GGTCTC	2 cut(s)	333, 664
Eco47I	GGWCC	2 cut(s)	437, 571
Eco52I	CGGCCG	1 cut(s)	308
Eco57I	CTGAAG	2 cut(s)	371, 756
EcoO109I	RGGNCCY	1 cut(s)	437
FaeI	CATG	2 cut(s)	790, 861
FaiI	YATR	6 cut(s)	411, 557, 597, 743, 788, 859
FatI	CATG	2 cut(s)	786, 857
FbaI	TGATCA	3 cut(s)	115, 186, 726
Fnu4HI	GCNGC	6 cut(s)	248, 305, 308, 327, 399, 652
Fsp4HI	GCNGC	6 cut(s)	248, 305, 308, 327, 399, 652
FspBI	CTAG	2 cut(s)	233, 531
GlaI	GCGC	1 cut(s)	74
GluI	GCNGC	6 cut(s)	248, 305, 308, 327, 399, 652
GsuI	CTGGAG	1 cut(s)	121
HaeIII	GGCC	2 cut(s)	310, 326
HapII	CCGG	5 cut(s)	100, 272, 292, 603, 794
HgaI	GACGC	1 cut(s)	131
HhaI	GCGC	1 cut(s)	75
Hin1II	CATG	2 cut(s)	790, 861
Hin6I	GCGC	1 cut(s)	73
HinP1I	GCGC	1 cut(s)	73
HindIII	AAGCTT	1 cut(s)	56
HpaII	CCGG	5 cut(s)	100, 272, 292, 603, 794
HphI	GGTGA	2 cut(s)	208, 482
Hpy166II	GTNNAC	2 cut(s)	30, 561
Hpy188I	TCNGA	7 cut(s)	214, 374, 487, 618, 760, 823, 908
Hpy188III	TCNNGA	6 cut(s)	100, 119, 338, 517, 734, 887
Hpy8I	GTNNAC	2 cut(s)	30, 561
Hpy99I	CGWCG	2 cut(s)	146, 149
HpyAV	CCTTC	3 cut(s)	118, 357, 676
HpyCH4III	ACNGT	1 cut(s)	494
HpyCH4V	TGCA	1 cut(s)	83
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 253, 395, 627
HpyF3I	CTNAG	3 cut(s)	390, 431, 647
Hsp92II	CATG	2 cut(s)	790, 861
HspAI	GCGC	1 cut(s)	73
Kpn2I	TCCGGA	1 cut(s)	99
Ksp22I	TGATCA	3 cut(s)	115, 186, 726
Kzo9I	GATC	6 cut(s)	115, 186, 487, 519, 726, 889
LmnI	GCTCC	2 cut(s)	635, 760
Lsp1109I	GCAGC	4 cut(s)	259, 316, 410, 663
MaeI	CTAG	2 cut(s)	233, 531
MaeIII	GTNAC	5 cut(s)	46, 172, 345, 656, 710
MalI	GATC	6 cut(s)	117, 188, 489, 521, 728, 891
MboI	GATC	6 cut(s)	115, 186, 487, 519, 726, 889
MluCI	AATT	3 cut(s)	262, 287, 473
MluI	ACGCGT	1 cut(s)	169
MlyI	GAGTC	4 cut(s)	218, 234, 518, 760
MmeI	TCCRAC	1 cut(s)	846
MroI	TCCGGA	1 cut(s)	99
MroXI	GAANNNNTTC	2 cut(s)	41, 287
MseI	TTAA	1 cut(s)	261
MslI	CAYNNNNRTG	2 cut(s)	566, 862
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	5 cut(s)	100, 272, 292, 603, 794
MspR9I	CCNGG	2 cut(s)	293, 604
Mva1269I	GAATGC	1 cut(s)	874
MvnI	CGCG	1 cut(s)	171
MwoI	GCNNNNNNNGC	4 cut(s)	64, 253, 395, 627
NciI	CCSGG	2 cut(s)	293, 604
NdeII	GATC	6 cut(s)	115, 186, 487, 519, 726, 889
NheI	GCTAGC	1 cut(s)	232
NlaIII	CATG	2 cut(s)	790, 861
NlaIV	GGNNCC	2 cut(s)	762, 792
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	3 cut(s)	46, 172, 656
NspV	TTCGAA	3 cut(s)	536, 551, 680
PctI	GAATGC	1 cut(s)	874
PdmI	GAANNNNTTC	2 cut(s)	41, 287
PfeI	GAWTC	7 cut(s)	5, 42, 241, 334, 538, 599, 836
PfoI	TCCNGGA	1 cut(s)	602
PkrI	GCNGC	6 cut(s)	249, 306, 309, 328, 400, 653
PleI	GAGTC	4 cut(s)	217, 233, 517, 760
PpsI	GAGTC	4 cut(s)	217, 233, 517, 760
PpuMI	RGGWCCY	1 cut(s)	437
PshBI	ATTAAT	1 cut(s)	261
Psp5II	RGGWCCY	1 cut(s)	437
PspN4I	GGNNCC	2 cut(s)	762, 792
PspPI	GGNCC	3 cut(s)	324, 437, 571
PspPPI	RGGWCCY	1 cut(s)	437
PstNI	CAGNNNCTG	1 cut(s)	218
RseI	CAYNNNNRTG	2 cut(s)	566, 862
SaqAI	TTAA	1 cut(s)	261
SatI	GCNGC	6 cut(s)	248, 305, 308, 327, 399, 652
Sau3AI	GATC	6 cut(s)	115, 186, 487, 519, 726, 889
Sau96I	GGNCC	3 cut(s)	324, 437, 571
SchI	GAGTC	4 cut(s)	218, 234, 518, 760
ScrFI	CCNGG	2 cut(s)	293, 604
SfuI	TTCGAA	3 cut(s)	536, 551, 680
SinI	GGWCC	2 cut(s)	437, 571
SmiMI	CAYNNNNRTG	2 cut(s)	566, 862
Sse9I	AATT	3 cut(s)	262, 287, 473
SsiI	CCGC	3 cut(s)	307, 327, 872
SspMI	CTAG	2 cut(s)	233, 531
StyD4I	CCNGG	2 cut(s)	291, 602
TaaI	ACNGT	1 cut(s)	494
TaqI	TCGA	8 cut(s)	337, 356, 448, 518, 536, 551, 566, 680
TasI	AATT	3 cut(s)	262, 287, 473
TauI	GCSGC	2 cut(s)	310, 329
TfiI	GAWTC	7 cut(s)	5, 42, 241, 334, 538, 599, 836
Tru1I	TTAA	1 cut(s)	261
Tru9I	TTAA	1 cut(s)	261
TscAI	CASTG	3 cut(s)	55, 118, 661
TseFI	GTSAC	3 cut(s)	46, 172, 656
TseI	GCWGC	4 cut(s)	247, 304, 398, 651
Tsp45I	GTSAC	3 cut(s)	46, 172, 656
TspDTI	ATGAA	3 cut(s)	255, 708, 797
TspRI	CASTG	3 cut(s)	55, 118, 661
VpaK11BI	GGWCC	2 cut(s)	437, 571
VspI	ATTAAT	1 cut(s)	261
XapI	RAATTY	2 cut(s)	287, 473
XmnI	GAANNNNTTC	2 cut(s)	41, 287
XspI	CTAG	2 cut(s)	233, 531

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.