RchiOBHm_Chr6g0276671

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
6
OG0006158
Physical Location & Seq
Forward (+)
38866758 .. 38867729
972 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ24820

Sequence Viewer

Length: 972 bp
ATGCCCTCAGTTCTTTTTTTTTTTAATAATTTTTTTTCCGCCACCAAGTTCATTTTCGTCACTGACGAGGACGCGACCGTTGCAGTCCCTAAGATTGTCCTGATTTCCGTCACCGACAAGGACGCGATTGACACCTCCCGCGACGAAGAAGAACAAGACCAACAACAACAACTGACGAAGAGGGTCATCAACGAAGTGAGAATCGAAGAGGAGTCCGAGGCGATCAGGGTGTTTCTAGCCAAGAATCAGAAGCAAAAGCCGAAGCCTTTACCAGAGGAGAAGAGGAAGTTCCGGGGCGTACGGCAGCGGCCGTGGGGCAAATGGGCCGCCGAGATTCGTGACCCGGTCCGCAAGTCCCGTGTCTGGCTTGAAACGTTTCAGATGGCTGAGGAGGCGGCGATGGTGTACGACAGAGCTACCATTCAGTTGAGGGGACATAACGCTCTCACGAATATCATCGCTCCTCCTTCCAAAATTCTCATTCCGGATCATGATTCTTCTTCGAATGAGTCCAGTTCGATCAACAATCTTTCTTGTTCGAATGCATCCAGTTCGATCGACCATATTGTTGTGATAGATGAGTATGATTCTGGGAAAGAGTGTCAAAGCATTCGCTCCCCGACCTCTGTTCTCAGTGGTAGCGACAACGAGTGGACACCTGGGTCGAAGGAGCAGGATGAAACCCATTTCCTTAAAGACTATGGTTACTGTGATGGTGTGATCAGTCCCACTGAAGCTATATTCTTCGGTGTTACAGAGCCGATTCTGTTGGAGGAAATGAACTTGGTGCCGGAAACAATGTTGGTGACGTCAAATTCAAAAACCCAGCTACTAAATTTAGAGCAGAACCTGTTCTCGGGTGGAGGAATGGGTGTTCAATTGGAGGGCAAGGGCGGTGTTGGAAGCGAGGGAGTGAGAAGGAAGAAGAAAGAGATAAAAACTGAGGGCATAATGGACATTTTGGTGTCATGA

Protein Analysis

323

Amino Acids

36.18

Weight (kDa)

5.02

Isoelectric Point (pI)

55.62

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 96 - 146 7.7e-12 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 661
AatII GACGTC 1 cut(s) 812
AccB1I GGYRCC 1 cut(s) 787
AccII CGCG 3 cut(s) 74, 125, 141
AccIII TCCGGA 1 cut(s) 484
AciI CCGC 7 cut(s) 39, 139, 307, 327, 349, 395, 894
AclI AACGTT 1 cut(s) 374
AclWI GGATC 1 cut(s) 495
AcoI YGGCCR 1 cut(s) 308
AcsI RAATTY 3 cut(s) 474, 814, 835
AcuI CTGAAG 1 cut(s) 753
AcyI GRCGYC 1 cut(s) 809
AfaI GTAC 2 cut(s) 300, 407
AfiI CCNNNNNNNGG 2 cut(s) 363, 856
AgsI TTSAA 3 cut(s) 371, 819, 878
AjnI CCWGG 1 cut(s) 658
AjuI GAANNNNNNNTTGG 2 cut(s) 38, 70
AloI GAACNNNNNNTCC 2 cut(s) 858, 890
AluBI AGCT 3 cut(s) 416, 737, 829
AluI AGCT 3 cut(s) 416, 737, 829
AlwI GGATC 1 cut(s) 495
AlwNI CAGNNNCTG 1 cut(s) 850
Ama87I CYCGRG 1 cut(s) 856
Aor13HI TCCGGA 1 cut(s) 484
AoxI GGCC 2 cut(s) 308, 324
ApeKI GCWGC 1 cut(s) 304
ApoI RAATTY 3 cut(s) 474, 814, 835
Asp700I GAANNNNTTC 2 cut(s) 375, 851
AspS9I GGNCC 2 cut(s) 324, 346
AsuC2I CCSGG 2 cut(s) 293, 344
AsuHPI GGTGA 2 cut(s) 103, 817
AsuII TTCGAA 2 cut(s) 503, 539
AvaI CYCGRG 1 cut(s) 856
AvaII GGWCC 1 cut(s) 346
BanI GGYRCC 1 cut(s) 787
BbvCI CCTCAGC 1 cut(s) 387
BbvI GCAGC 1 cut(s) 316
BccI CCATC 3 cut(s) 376, 394, 707
BceAI ACGGC 2 cut(s) 295, 317
BcgI CGANNNNNNTGC 2 cut(s) 534, 568
BciT130I CCWGG 1 cut(s) 660
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 2 cut(s) 293, 344
BfaI CTAG 1 cut(s) 236
BisI GCNGC 4 cut(s) 305, 308, 327, 396
BlsI GCNGC 4 cut(s) 306, 309, 328, 397
Bme1390I CCNGG 3 cut(s) 293, 344, 660
Bme18I GGWCC 1 cut(s) 346
BmeT110I CYCGRG 1 cut(s) 856
BmgT120I GGNCC 2 cut(s) 324, 346
BmiI GGNNCC 1 cut(s) 789
BmrFI CCNGG 3 cut(s) 293, 344, 660
BmsI GCATC 1 cut(s) 554
Bpu10I CCTNAGC 1 cut(s) 387
Bpu14I TTCGAA 2 cut(s) 503, 539
BpuMI CCSGG 2 cut(s) 293, 344
BsaHI GRCGYC 1 cut(s) 809
BsaJI CCNNGG 4 cut(s) 216, 292, 311, 659
BsaWI WCCGGW 1 cut(s) 484
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 856
Bse1I ACTGG 2 cut(s) 513, 549
BseAI TCCGGA 1 cut(s) 484
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 4 cut(s) 216, 292, 311, 659
BseGI GGATG 2 cut(s) 545, 682
BseLI CCNNNNNNNGG 2 cut(s) 363, 856
BseMII CTCAG 4 cut(s) 21, 378, 646, 933
BseNI ACTGG 2 cut(s) 513, 549
BseRI GAGGAG 4 cut(s) 224, 290, 404, 453
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 1 cut(s) 316
BseYI CCCAGC 1 cut(s) 825
Bsh1236I CGCG 3 cut(s) 74, 125, 141
Bsh1285I CGRYCG 3 cut(s) 78, 311, 558
BshFI GGCC 2 cut(s) 310, 326
BshNI GGYRCC 1 cut(s) 787
BsiEI CGRYCG 3 cut(s) 78, 311, 558
BsiHKCI CYCGRG 1 cut(s) 856
BsiSI CCGG 4 cut(s) 292, 344, 485, 791
BsiWI CGTACG 1 cut(s) 298
BslFI GGGAC 4 cut(s) 71, 340, 447, 711
BslI CCNNNNNNNGG 2 cut(s) 363, 856
BsmFI GGGAC 4 cut(s) 71, 340, 447, 711
BsmI GAATGC 2 cut(s) 547, 609
BsnI GGCC 2 cut(s) 310, 326
BsoBI CYCGRG 1 cut(s) 856
Bsp119I TTCGAA 2 cut(s) 503, 539
Bsp13I TCCGGA 1 cut(s) 484
Bsp143I GATC 5 cut(s) 222, 487, 519, 555, 720
BspACI CCGC 7 cut(s) 39, 139, 307, 327, 349, 395, 894
BspANI GGCC 2 cut(s) 310, 326
BspCNI CTCAG 4 cut(s) 20, 379, 645, 934
BspEI TCCGGA 1 cut(s) 484
BspFNI CGCG 3 cut(s) 74, 125, 141
BspHI TCATGA 2 cut(s) 490, 968
BspLI GGNNCC 1 cut(s) 789
BspPI GGATC 1 cut(s) 495
BspT104I TTCGAA 2 cut(s) 503, 539
BspT107I GGYRCC 1 cut(s) 787
BsrI ACTGG 2 cut(s) 513, 549
BssECI CCNNGG 4 cut(s) 216, 292, 311, 659
BssMI GATC 5 cut(s) 222, 487, 519, 555, 720
BssNI GRCGYC 1 cut(s) 809
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 2 cut(s) 79, 710
Bst6I CTCTTC 3 cut(s) 173, 201, 275
BstACI GRCGYC 1 cut(s) 809
BstBI TTCGAA 2 cut(s) 503, 539
BstDEI CTNAG 5 cut(s) 7, 90, 387, 632, 942
BstDSI CCRYGG 1 cut(s) 311
BstF5I GGATG 2 cut(s) 545, 682
BstFNI CGCG 3 cut(s) 74, 125, 141
BstKTI GATC 5 cut(s) 225, 490, 522, 558, 723
BstMBI GATC 5 cut(s) 222, 487, 519, 555, 720
BstMCI CGRYCG 3 cut(s) 78, 311, 558
BstMWI GCNNNNNNNGC 2 cut(s) 80, 392
BstNI CCWGG 1 cut(s) 660
BstSCI CCNGG 3 cut(s) 291, 342, 658
BstUI CGCG 3 cut(s) 74, 125, 141
BstV1I GCAGC 1 cut(s) 316
BstZI CGGCCG 1 cut(s) 308
BsuRI GGCC 2 cut(s) 310, 326
BtgI CCRYGG 1 cut(s) 311
BtgZI GCGATG 2 cut(s) 413, 442
BtsCI GGATG 2 cut(s) 545, 682
BtsIMutI CAGTG 3 cut(s) 60, 640, 729
CaiI CAGNNNCTG 1 cut(s) 850
CciI TCATGA 2 cut(s) 490, 968
Cfr13I GGNCC 2 cut(s) 324, 346
CpoI CGGWCCG 1 cut(s) 346
CseI GACGC 2 cut(s) 80, 131
Csp6I GTAC 2 cut(s) 299, 406
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 2 cut(s) 491, 969
CviQI GTAC 2 cut(s) 299, 406
DdeI CTNAG 5 cut(s) 7, 90, 387, 632, 942
DpnI GATC 5 cut(s) 224, 489, 521, 557, 722
DpnII GATC 5 cut(s) 222, 487, 519, 555, 720
DrdI GACNNNNNNGTC 1 cut(s) 661
DseDI GACNNNNNNGTC 1 cut(s) 661
EaeI YGGCCR 1 cut(s) 308
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 3 cut(s) 173, 201, 275
EarI CTCTTC 3 cut(s) 173, 201, 275
EciI GGCGGA 1 cut(s) 28
EclXI CGGCCG 1 cut(s) 308
Eco47I GGWCC 1 cut(s) 346
Eco52I CGGCCG 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 753
Eco88I CYCGRG 1 cut(s) 856
EcoRII CCWGG 1 cut(s) 658
EcoT22I ATGCAT 1 cut(s) 547
FaeI CATG 2 cut(s) 494, 972
FaiI YATR 8 cut(s) 438, 492, 564, 585, 702, 740, 950, 970
FaqI GGGAC 4 cut(s) 71, 340, 447, 711
FatI CATG 2 cut(s) 490, 968
FauI CCCGC 1 cut(s) 146
FbaI TGATCA 1 cut(s) 720
Fnu4HI GCNGC 4 cut(s) 305, 308, 327, 396
FokI GGATG 2 cut(s) 532, 689
Fsp4HI GCNGC 4 cut(s) 305, 308, 327, 396
FspBI CTAG 1 cut(s) 236
GluI GCNGC 4 cut(s) 305, 308, 327, 396
GsaI CCCAGC 1 cut(s) 829
HaeIII GGCC 2 cut(s) 310, 326
HapII CCGG 4 cut(s) 292, 344, 485, 791
HgaI GACGC 2 cut(s) 80, 131
Hin1I GRCGYC 1 cut(s) 809
Hin1II CATG 2 cut(s) 494, 972
HinfI GANTC 8 cut(s) 201, 212, 244, 334, 494, 509, 587, 763
HpaII CCGG 4 cut(s) 292, 344, 485, 791
HphI GGTGA 2 cut(s) 103, 817
Hpy166II GTNNAC 2 cut(s) 406, 654
Hpy188I TCNGA 3 cut(s) 217, 249, 381
Hpy188III TCNNGA 6 cut(s) 100, 338, 448, 485, 491, 969
Hpy8I GTNNAC 2 cut(s) 406, 654
Hpy99I CGWCG 1 cut(s) 146
HpyAV CCTTC 3 cut(s) 477, 661, 912
HpyCH4III ACNGT 2 cut(s) 79, 710
HpyCH4IV ACGT 2 cut(s) 374, 809
HpyCH4V TGCA 2 cut(s) 83, 545
HpyF10VI GCNNNNNNNGC 2 cut(s) 80, 392
HpyF3I CTNAG 5 cut(s) 7, 90, 387, 632, 942
HpySE526I ACGT 2 cut(s) 374, 809
Hsp92I GRCGYC 1 cut(s) 809
Hsp92II CATG 2 cut(s) 494, 972
Kpn2I TCCGGA 1 cut(s) 484
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 5 cut(s) 222, 487, 519, 555, 720
LmnI GCTCC 3 cut(s) 466, 620, 670
Lsp1109I GCAGC 1 cut(s) 316
LweI GCATC 1 cut(s) 554
MaeI CTAG 1 cut(s) 236
MaeII ACGT 2 cut(s) 374, 809
MaeIII GTNAC 6 cut(s) 58, 109, 338, 704, 751, 805
MalI GATC 5 cut(s) 224, 489, 521, 557, 722
MboI GATC 5 cut(s) 222, 487, 519, 555, 720
MfeI CAATTG 1 cut(s) 878
MluCI AATT 5 cut(s) 28, 474, 814, 835, 878
MlyI GAGTC 2 cut(s) 221, 518
MmeI TCCRAC 2 cut(s) 750, 880
Mph1103I ATGCAT 1 cut(s) 547
MroI TCCGGA 1 cut(s) 484
MroXI GAANNNNTTC 2 cut(s) 375, 851
MseI TTAA 2 cut(s) 24, 693
MslI CAYNNNNRTG 1 cut(s) 962
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 4 cut(s) 292, 344, 485, 791
MspR9I CCNGG 3 cut(s) 293, 344, 660
MunI CAATTG 1 cut(s) 878
Mva1269I GAATGC 2 cut(s) 547, 609
MvaI CCWGG 1 cut(s) 660
MvnI CGCG 3 cut(s) 74, 125, 141
MwoI GCNNNNNNNGC 2 cut(s) 80, 392
NciI CCSGG 2 cut(s) 293, 344
NdeII GATC 5 cut(s) 222, 487, 519, 555, 720
NlaIII CATG 2 cut(s) 494, 972
NlaIV GGNNCC 1 cut(s) 789
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 4 cut(s) 58, 109, 338, 805
NsiI ATGCAT 1 cut(s) 547
NspV TTCGAA 2 cut(s) 503, 539
PagI TCATGA 2 cut(s) 490, 968
PcsI WCGNNNNNNNCGW 1 cut(s) 63
PctI GAATGC 2 cut(s) 547, 609
PdmI GAANNNNTTC 2 cut(s) 375, 851
PfeI GAWTC 6 cut(s) 201, 244, 334, 494, 587, 763
Pfl23II CGTACG 1 cut(s) 298
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 4 cut(s) 306, 309, 328, 397
Ple19I CGATCG 1 cut(s) 558
PleI GAGTC 2 cut(s) 220, 517
PpsI GAGTC 2 cut(s) 220, 517
Psp1406I AACGTT 1 cut(s) 374
Psp6I CCWGG 1 cut(s) 658
PspFI CCCAGC 1 cut(s) 825
PspGI CCWGG 1 cut(s) 658
PspLI CGTACG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 789
PspPI GGNCC 2 cut(s) 324, 346
PstNI CAGNNNCTG 1 cut(s) 850
PsyI GACNNNGTC 1 cut(s) 344
PvuI CGATCG 1 cut(s) 558
RsaI GTAC 2 cut(s) 300, 407
RsaNI GTAC 2 cut(s) 299, 406
RseI CAYNNNNRTG 1 cut(s) 962
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SaqAI TTAA 2 cut(s) 24, 693
SatI GCNGC 4 cut(s) 305, 308, 327, 396
Sau3AI GATC 5 cut(s) 222, 487, 519, 555, 720
Sau96I GGNCC 2 cut(s) 324, 346
SchI GAGTC 2 cut(s) 221, 518
ScrFI CCNGG 3 cut(s) 293, 344, 660
SetI ASST 9 cut(s) 137, 377, 418, 626, 661, 739, 812, 831, 852
SfaNI GCATC 1 cut(s) 554
SfuI TTCGAA 2 cut(s) 503, 539
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 962
Sse9I AATT 5 cut(s) 28, 474, 814, 835, 878
SsiI CCGC 7 cut(s) 39, 139, 307, 327, 349, 395, 894
SspMI CTAG 1 cut(s) 236
StyD4I CCNGG 3 cut(s) 291, 342, 658
TaaI ACNGT 2 cut(s) 79, 710
TaiI ACGT 2 cut(s) 377, 812
TaqI TCGA 7 cut(s) 204, 503, 518, 539, 554, 558, 665
TasI AATT 5 cut(s) 28, 474, 814, 835, 878
TauI GCSGC 3 cut(s) 310, 329, 398
TfiI GAWTC 6 cut(s) 201, 244, 334, 494, 587, 763
Tru1I TTAA 2 cut(s) 24, 693
Tru9I TTAA 2 cut(s) 24, 693
TscAI CASTG 3 cut(s) 67, 640, 736
TseFI GTSAC 4 cut(s) 58, 109, 338, 805
TseI GCWGC 1 cut(s) 304
Tsp45I GTSAC 4 cut(s) 58, 109, 338, 805
TspDTI ATGAA 3 cut(s) 40, 693, 794
TspGWI ACGGA 1 cut(s) 97
TspRI CASTG 3 cut(s) 67, 640, 736
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 3 cut(s) 474, 814, 835
XmnI GAANNNNTTC 2 cut(s) 375, 851
XspI CTAG 1 cut(s) 236
ZraI GACGTC 1 cut(s) 810
Zsp2I ATGCAT 1 cut(s) 547
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.