Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Reverse (-)

43938830 .. 43944441

Gene Structure 5612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG233400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGATCCCTAAGATTGTCAGGATTTCCGTCACCAACGAGGACGCAACCGACACCTCCAGCGACGAAGAAGAACAAGACCAACAACAACGACTGACGAAGAGGGTCATCAATGAAGTGAGAATCGAAGACGAGTCCGAGGCGGTCAGGGTGTTTCAGGCCAAGAATCAGAAGCAAAAGCCGAAGCCTTTACCGGAGGAGAAGAGGAAGTTCTGGGGCATACGGCAGCGGTCGTGGGGCAAATGGGTCGCCGAGATTCGTGACCCGGTCGGCAAGTCCCATGTCTGGCTCGGAACATTTCAGAAGGCGGAGGAGGCGGCGATGGTGTACGACAAAGCTACCATTCAGTTGAGGGGACATAACGCTCTCACGAATATCATCGCTCCTCCTTCCAAAATTCTCATTCCGGATCACGATTCTTCTTCGAATGAGTCCAGTTCGATCAACAATCTTTCTTGTTCGAATGCGTCCAATTTGATCGACCATATTGTTGTGATAGATGAGTATGATTCCGGGAAAGAGTGTGAGCATTCGCTCACCGACCTCTGTTCTCAGTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

185

Amino Acids

21.07

Weight (kDa)

5.43

Isoelectric Point (pI)

55.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	70 - 119	1.3e-09	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	403
AciI	CCGC	4 cut(s)	140, 226, 305, 314
AclWI	GGATC	1 cut(s)	414
AcsI	RAATTY	1 cut(s)	393
AfaI	GTAC	1 cut(s)	326
AfiI	CCNNNNNNNGG	1 cut(s)	282
AluBI	AGCT	1 cut(s)	335
AluI	AGCT	1 cut(s)	335
AlwI	GGATC	1 cut(s)	414
Aor13HI	TCCGGA	1 cut(s)	403
AoxI	GGCC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	223
ApoI	RAATTY	1 cut(s)	393
AsuC2I	CCSGG	2 cut(s)	263, 511
AsuHPI	GGTGA	2 cut(s)	22, 526
AsuII	TTCGAA	2 cut(s)	422, 458
BbsI	GAAGAC	1 cut(s)	132
BbvI	GCAGC	1 cut(s)	235
BccI	CCATC	1 cut(s)	313
BceAI	ACGGC	1 cut(s)	236
BcgI	CGANNNNNNTGC	2 cut(s)	226, 260
BcnI	CCSGG	2 cut(s)	263, 511
BisI	GCNGC	2 cut(s)	224, 315
BlsI	GCNGC	2 cut(s)	225, 316
Bme1390I	CCNGG	2 cut(s)	263, 511
BmrFI	CCNGG	2 cut(s)	263, 511
BpiI	GAAGAC	1 cut(s)	132
BpmI	CTGGAG	1 cut(s)	40
Bpu14I	TTCGAA	2 cut(s)	422, 458
BpuMI	CCSGG	2 cut(s)	263, 511
BsaJI	CCNNGG	1 cut(s)	135
BsaWI	WCCGGW	2 cut(s)	190, 403
Bsc4I	CCNNNNNNNGG	1 cut(s)	282
Bse1I	ACTGG	1 cut(s)	432
BseAI	TCCGGA	1 cut(s)	403
BseDI	CCNNGG	1 cut(s)	135
BseLI	CCNNNNNNNGG	1 cut(s)	282
BseNI	ACTGG	1 cut(s)	432
BseRI	GAGGAG	3 cut(s)	209, 323, 372
BseXI	GCAGC	1 cut(s)	235
Bsh1285I	CGRYCG	2 cut(s)	230, 267
BshFI	GGCC	1 cut(s)	158
BsiEI	CGRYCG	2 cut(s)	230, 267
BsiSI	CCGG	4 cut(s)	191, 263, 404, 510
BslFI	GGGAC	2 cut(s)	259, 366
BslI	CCNNNNNNNGG	1 cut(s)	282
BsmFI	GGGAC	2 cut(s)	259, 366
BsmI	GAATGC	2 cut(s)	466, 526
BsnI	GGCC	1 cut(s)	158
Bsp119I	TTCGAA	2 cut(s)	422, 458
Bsp13I	TCCGGA	1 cut(s)	403
Bsp143I	GATC	4 cut(s)	3, 406, 438, 474
BspACI	CCGC	4 cut(s)	140, 226, 305, 314
BspANI	GGCC	1 cut(s)	158
BspEI	TCCGGA	1 cut(s)	403
BspPI	GGATC	1 cut(s)	414
BspT104I	TTCGAA	2 cut(s)	422, 458
BsrI	ACTGG	1 cut(s)	432
BssECI	CCNNGG	1 cut(s)	135
BssMI	GATC	4 cut(s)	3, 406, 438, 474
Bst6I	CTCTTC	2 cut(s)	92, 194
BstBI	TTCGAA	2 cut(s)	422, 458
BstDEI	CTNAG	2 cut(s)	9, 549
BstKTI	GATC	4 cut(s)	6, 409, 441, 477
BstMBI	GATC	4 cut(s)	3, 406, 438, 474
BstMCI	CGRYCG	2 cut(s)	230, 267
BstMWI	GCNNNNNNNGC	1 cut(s)	311
BstSCI	CCNGG	2 cut(s)	261, 509
BstV1I	GCAGC	1 cut(s)	235
BstV2I	GAAGAC	1 cut(s)	132
BsuRI	GGCC	1 cut(s)	158
BtgZI	GCGATG	2 cut(s)	332, 361
BtsIMutI	CAGTG	1 cut(s)	557
CseI	GACGC	2 cut(s)	50, 453
Csp6I	GTAC	1 cut(s)	325
CviAII	CATG	1 cut(s)	278
CviJI	RGCY	5 cut(s)	158, 178, 184, 286, 335
CviKI_1	RGCY	5 cut(s)	158, 178, 184, 286, 335
CviQI	GTAC	1 cut(s)	325
DdeI	CTNAG	2 cut(s)	9, 549
DpnI	GATC	4 cut(s)	5, 408, 440, 476
DpnII	GATC	4 cut(s)	3, 406, 438, 474
Eam1104I	CTCTTC	2 cut(s)	92, 194
EarI	CTCTTC	2 cut(s)	92, 194
EciI	GGCGGA	1 cut(s)	320
FaeI	CATG	1 cut(s)	281
FaiI	YATR	5 cut(s)	218, 279, 357, 483, 504
FaqI	GGGAC	2 cut(s)	259, 366
FatI	CATG	1 cut(s)	277
Fnu4HI	GCNGC	2 cut(s)	224, 315
Fsp4HI	GCNGC	2 cut(s)	224, 315
GluI	GCNGC	2 cut(s)	224, 315
GsuI	CTGGAG	1 cut(s)	40
HaeIII	GGCC	1 cut(s)	158
HapII	CCGG	4 cut(s)	191, 263, 404, 510
HgaI	GACGC	2 cut(s)	50, 453
Hin1II	CATG	1 cut(s)	281
HinfI	GANTC	7 cut(s)	120, 131, 163, 253, 413, 428, 506
HpaII	CCGG	4 cut(s)	191, 263, 404, 510
HphI	GGTGA	2 cut(s)	22, 526
Hpy166II	GTNNAC	1 cut(s)	325
Hpy188I	TCNGA	4 cut(s)	136, 168, 290, 300
Hpy188III	TCNNGA	5 cut(s)	19, 257, 367, 404, 410
Hpy8I	GTNNAC	1 cut(s)	325
Hpy99I	CGWCG	1 cut(s)	65
HpyAV	CCTTC	2 cut(s)	295, 396
HpyF10VI	GCNNNNNNNGC	1 cut(s)	311
HpyF3I	CTNAG	2 cut(s)	9, 549
Hsp92II	CATG	1 cut(s)	281
Kpn2I	TCCGGA	1 cut(s)	403
Kzo9I	GATC	4 cut(s)	3, 406, 438, 474
LmnI	GCTCC	1 cut(s)	385
Lsp1109I	GCAGC	1 cut(s)	235
MaeIII	GTNAC	2 cut(s)	28, 257
MalI	GATC	4 cut(s)	5, 408, 440, 476
MboI	GATC	4 cut(s)	3, 406, 438, 474
MboII	GAAGA	7 cut(s)	77, 80, 109, 137, 211, 408, 411
MluCI	AATT	2 cut(s)	393, 469
MlyI	GAGTC	2 cut(s)	140, 437
MroI	TCCGGA	1 cut(s)	403
MspA1I	CMGCKG	1 cut(s)	226
MspI	CCGG	4 cut(s)	191, 263, 404, 510
MspR9I	CCNGG	2 cut(s)	263, 511
Mva1269I	GAATGC	2 cut(s)	466, 526
MwoI	GCNNNNNNNGC	1 cut(s)	311
NciI	CCSGG	2 cut(s)	263, 511
NdeII	GATC	4 cut(s)	3, 406, 438, 474
NlaIII	CATG	1 cut(s)	281
NmeAIII	GCCGAG	1 cut(s)	274
NmuCI	GTSAC	2 cut(s)	28, 257
NspV	TTCGAA	2 cut(s)	422, 458
PctI	GAATGC	2 cut(s)	466, 526
PfeI	GAWTC	5 cut(s)	120, 163, 253, 413, 506
PflFI	GACNNNGTC	1 cut(s)	263
PfoI	TCCNGGA	1 cut(s)	509
PkrI	GCNGC	2 cut(s)	225, 316
PleI	GAGTC	2 cut(s)	139, 436
PpsI	GAGTC	2 cut(s)	139, 436
PsyI	GACNNNGTC	1 cut(s)	263
RsaI	GTAC	1 cut(s)	326
RsaNI	GTAC	1 cut(s)	325
SatI	GCNGC	2 cut(s)	224, 315
Sau3AI	GATC	4 cut(s)	3, 406, 438, 474
SchI	GAGTC	2 cut(s)	140, 437
ScrFI	CCNGG	2 cut(s)	263, 511
SetI	ASST	3 cut(s)	56, 337, 543
SfuI	TTCGAA	2 cut(s)	422, 458
Sse9I	AATT	2 cut(s)	393, 469
SsiI	CCGC	4 cut(s)	140, 226, 305, 314
StyD4I	CCNGG	2 cut(s)	261, 509
TaqI	TCGA	5 cut(s)	123, 422, 437, 458, 477
TasI	AATT	2 cut(s)	393, 469
TauI	GCSGC	1 cut(s)	317
TfiI	GAWTC	5 cut(s)	120, 163, 253, 413, 506
TscAI	CASTG	1 cut(s)	557
TseFI	GTSAC	2 cut(s)	28, 257
TseI	GCWGC	1 cut(s)	223
Tsp45I	GTSAC	2 cut(s)	28, 257
TspDTI	ATGAA	1 cut(s)	126
TspGWI	ACGGA	1 cut(s)	16
TspRI	CASTG	1 cut(s)	557
Tth111I	GACNNNGTC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	393

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.