Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

11218403 .. 11219251

Gene Structure 849 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g10430.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 849 bp

ATGGATCGAGCCAAGCAGTACACGCAGCGTCGCACGGTCAAAAACAAGCTTGTCAAAAAGCTCACCACCCGCTTCCGGGAGTCTACTGCCGGAGCCCCCCAAATCGTAAGGATTTCCGTCACCGACGACAACGCCACCGACTCCTCCAGCGACGAAGCCGAAGCCGAGCCGGGCCGGAAATACCGGGTCCTCGTGAAGCGCGTGATCAACGAGGTCAGAATCGAAGACCCGTCTCCTTCTCCGGCGCTCGTCTCAAAACCAACTAAGCCTTCTAGGTGCAGAGCGGCGGAGGAGAGTAACGAAATTTCGCCCAACGGGAAGAAATACCGAGGCGTACGGCAGAGGCCGTGGGGGAAATGGGCGGCGGAGATCCGAGACCCAAAACGTGGGATCCGGGTCTGGCTCGGAACTTTCGAGACGGCGGAGGAGGCCGGTATGGCTTACGATAAGGCTGCCATTGCGTTTAAGGGACCTCTGGCTTTGACCAATTTCCTCAAGCCTCCCGAAATTGCCATTCCGGACATCTCGGAAGAGGACTGCAACCCAATTTCTCAGTCTCCGCTCATCTCGCAGTGCGGCCACAGCGTCCGGTCGCCGACCTCTGTTCTCAGTGGCCGAGAACCCGAAATCGACTGGAAAGTTTCGGAGAGACAAAATTTCGGGTTTTTTGATACGGAGTTTTGGTTGAATGATTGTTTTGAACCGCCGATATTTTTCGAGGAGATGAGTGTCGTACCCGAAACGCTTCTGAAAGATGAGGATTTCTCCGACTTATCGCTTGATTTCCGGTCGTGTAATTGGGATGACGTGGAGGATTACTTTCAAGATGCTTATGAGTTGAAACGATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

283

Amino Acids

32.16

Weight (kDa)

5.23

Isoelectric Point (pI)

52.65

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
AP2	PF00847	108 - 157	9.7e-14	AP2 domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	386
AccBSI	CCGCTC	2 cut(s)	284, 562
AccI	GTMKAC	1 cut(s)	83
AccII	CGCG	1 cut(s)	201
AccIII	TCCGGA	1 cut(s)	517
AciI	CCGC	9 cut(s)	70, 284, 287, 362, 365, 422, 560, 576, 704
AclWI	GGATC	4 cut(s)	12, 364, 385, 398
AcoI	YGGCCR	2 cut(s)	577, 613
AcsI	RAATTY	2 cut(s)	303, 655
AfaI	GTAC	3 cut(s)	20, 336, 735
AfiI	CCNNNNNNNGG	3 cut(s)	75, 76, 386
AgsI	TTSAA	4 cut(s)	688, 701, 824, 841
AjiI	CACGTC	1 cut(s)	808
AjuI	GAANNNNNNNTTGG	2 cut(s)	253, 285
AluBI	AGCT	2 cut(s)	49, 61
AluI	AGCT	2 cut(s)	49, 61
Alw26I	GTCTC	6 cut(s)	237, 256, 369, 410, 561, 643
AlwI	GGATC	4 cut(s)	12, 364, 385, 398
Aor13HI	TCCGGA	1 cut(s)	517
AoxI	GGCC	5 cut(s)	172, 344, 429, 577, 613
ApeKI	GCWGC	2 cut(s)	25, 452
ApoI	RAATTY	2 cut(s)	303, 655
Asp700I	GAANNNNTTC	1 cut(s)	744
AspLEI	GCGC	2 cut(s)	201, 247
AspS9I	GGNCC	3 cut(s)	172, 187, 470
AsuC2I	CCSGG	4 cut(s)	77, 171, 185, 395
AsuHPI	GGTGA	2 cut(s)	55, 112
AvaII	GGWCC	2 cut(s)	187, 470
BamHI	GGATCC	1 cut(s)	390
BanII	GRGCYC	1 cut(s)	97
BauI	CACGAG	1 cut(s)	191
BbsI	GAAGAC	1 cut(s)	231
BbvI	GCAGC	2 cut(s)	37, 439
BceAI	ACGGC	3 cut(s)	331, 353, 435
BcgI	CGANNNNNNTGC	2 cut(s)	434, 468
BclI	TGATCA	1 cut(s)	204
BcnI	CCSGG	4 cut(s)	77, 171, 185, 395
BcoDI	GTCTC	6 cut(s)	237, 256, 369, 410, 561, 643
BfaI	CTAG	1 cut(s)	273
BfoI	RGCGCY	1 cut(s)	248
BglI	GCCNNNNNGGC	1 cut(s)	437
BisI	GCNGC	5 cut(s)	26, 285, 363, 453, 577
BlsI	GCNGC	5 cut(s)	27, 286, 364, 454, 578
Bme1390I	CCNGG	4 cut(s)	77, 171, 185, 395
Bme18I	GGWCC	2 cut(s)	187, 470
BmgBI	CACGTC	1 cut(s)	808
BmgT120I	GGNCC	3 cut(s)	172, 187, 470
BmiI	GGNNCC	4 cut(s)	94, 188, 392, 471
BmrFI	CCNGG	4 cut(s)	77, 171, 185, 395
BmsI	GCATC	1 cut(s)	817
BpiI	GAAGAC	1 cut(s)	231
BplI	GAGNNNNNCTC	2 cut(s)	749, 781
BpmI	CTGGAG	1 cut(s)	130
BpuEI	CTTGAG	1 cut(s)	479
BpuMI	CCSGG	4 cut(s)	77, 171, 185, 395
BsaI	GGTCTC	1 cut(s)	369
BsaJI	CCNNGG	2 cut(s)	328, 347
BsaWI	WCCGGW	3 cut(s)	517, 588, 786
BsaXI	ACNNNNNCTCC	2 cut(s)	668, 698
Bsc4I	CCNNNNNNNGG	3 cut(s)	75, 76, 386
Bse118I	RCCGGY	1 cut(s)	431
Bse1I	ACTGG	1 cut(s)	638
Bse3DI	GCAATG	1 cut(s)	456
BseAI	TCCGGA	1 cut(s)	517
BseDI	CCNNGG	2 cut(s)	328, 347
BseGI	GGATG	1 cut(s)	808
BseLI	CCNNNNNNNGG	3 cut(s)	75, 76, 386
BseMI	GCAATG	1 cut(s)	456
BseMII	CTCAG	2 cut(s)	566, 622
BseNI	ACTGG	1 cut(s)	638
BseRI	GAGGAG	4 cut(s)	133, 305, 440, 734
BseXI	GCAGC	2 cut(s)	37, 439
BsgI	GTGCAG	1 cut(s)	298
Bsh1236I	CGCG	1 cut(s)	201
Bsh1285I	CGRYCG	2 cut(s)	593, 791
BshFI	GGCC	5 cut(s)	174, 346, 431, 579, 615
BsiEI	CGRYCG	2 cut(s)	593, 791
BsiWI	CGTACG	1 cut(s)	334
BslFI	GGGAC	1 cut(s)	483
BslI	CCNNNNNNNGG	3 cut(s)	75, 76, 386
BsmAI	GTCTC	6 cut(s)	237, 256, 369, 410, 561, 643
BsmBI	CGTCTC	3 cut(s)	237, 256, 410
BsmFI	GGGAC	1 cut(s)	483
BsnI	GGCC	5 cut(s)	174, 346, 431, 579, 615
Bso31I	GGTCTC	1 cut(s)	369
Bsp1286I	GDGCHC	1 cut(s)	97
Bsp13I	TCCGGA	1 cut(s)	517
Bsp143I	GATC	4 cut(s)	4, 204, 369, 390
BspACI	CCGC	9 cut(s)	70, 284, 287, 362, 365, 422, 560, 576, 704
BspANI	GGCC	5 cut(s)	174, 346, 431, 579, 615
BspCNI	CTCAG	2 cut(s)	565, 621
BspEI	TCCGGA	1 cut(s)	517
BspFNI	CGCG	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	94, 188, 392, 471
BspPI	GGATC	4 cut(s)	12, 364, 385, 398
BspTNI	GGTCTC	1 cut(s)	369
BsrBI	CCGCTC	2 cut(s)	284, 562
BsrDI	GCAATG	1 cut(s)	456
BsrFI	RCCGGY	1 cut(s)	431
BsrI	ACTGG	1 cut(s)	638
BssAI	RCCGGY	1 cut(s)	431
BssECI	CCNNGG	2 cut(s)	328, 347
BssMI	GATC	4 cut(s)	4, 204, 369, 390
BssSI	CACGAG	1 cut(s)	191
Bst2BI	CACGAG	1 cut(s)	191
Bst4CI	ACNGT	1 cut(s)	37
Bst6I	CTCTTC	1 cut(s)	525
BstDEI	CTNAG	3 cut(s)	264, 552, 608
BstDSI	CCRYGG	1 cut(s)	347
BstF5I	GGATG	1 cut(s)	808
BstFNI	CGCG	1 cut(s)	201
BstH2I	RGCGCY	1 cut(s)	248
BstHHI	GCGC	2 cut(s)	201, 247
BstKTI	GATC	4 cut(s)	7, 207, 372, 393
BstMAI	GTCTC	6 cut(s)	237, 256, 369, 410, 561, 643
BstMBI	GATC	4 cut(s)	4, 204, 369, 390
BstMCI	CGRYCG	2 cut(s)	593, 791
BstMWI	GCNNNNNNNGC	6 cut(s)	22, 428, 437, 458, 568, 582
BstSCI	CCNGG	4 cut(s)	75, 169, 183, 393
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	37, 439
BstV2I	GAAGAC	1 cut(s)	231
BstX2I	RGATCY	2 cut(s)	369, 390
BstYI	RGATCY	2 cut(s)	369, 390
BsuRI	GGCC	5 cut(s)	174, 346, 431, 579, 615
BtgI	CCRYGG	1 cut(s)	347
BtrI	CACGTC	1 cut(s)	808
BtsCI	GGATG	1 cut(s)	808
BtsI	GCAGTG	1 cut(s)	578
BtsIMutI	CAGTG	2 cut(s)	578, 616
CfoI	GCGC	2 cut(s)	201, 247
Cfr10I	RCCGGY	1 cut(s)	431
Cfr13I	GGNCC	3 cut(s)	172, 187, 470
CseI	GACGC	2 cut(s)	17, 574
Csp6I	GTAC	3 cut(s)	19, 335, 734
CviQI	GTAC	3 cut(s)	19, 335, 734
DdeI	CTNAG	3 cut(s)	264, 552, 608
DpnI	GATC	4 cut(s)	6, 206, 371, 392
DpnII	GATC	4 cut(s)	4, 204, 369, 390
EaeI	YGGCCR	2 cut(s)	577, 613
Eam1104I	CTCTTC	1 cut(s)	525
EarI	CTCTTC	1 cut(s)	525
EciI	GGCGGA	3 cut(s)	302, 380, 437
Eco24I	GRGCYC	1 cut(s)	97
Eco31I	GGTCTC	1 cut(s)	369
Eco47I	GGWCC	2 cut(s)	187, 470
EcoO109I	RGGNCCY	2 cut(s)	187, 470
EcoT38I	GRGCYC	1 cut(s)	97
Esp3I	CGTCTC	3 cut(s)	237, 256, 410
FaiI	YATR	2 cut(s)	437, 834
FaqI	GGGAC	1 cut(s)	483
FauI	CCCGC	1 cut(s)	77
FbaI	TGATCA	1 cut(s)	204
FblI	GTMKAC	1 cut(s)	83
Fnu4HI	GCNGC	5 cut(s)	26, 285, 363, 453, 577
FokI	GGATG	1 cut(s)	815
FriOI	GRGCYC	1 cut(s)	97
Fsp4HI	GCNGC	5 cut(s)	26, 285, 363, 453, 577
FspBI	CTAG	1 cut(s)	273
GlaI	GCGC	2 cut(s)	200, 246
GluI	GCNGC	5 cut(s)	26, 285, 363, 453, 577
GsuI	CTGGAG	1 cut(s)	130
HaeII	RGCGCY	1 cut(s)	248
HaeIII	GGCC	5 cut(s)	174, 346, 431, 579, 615
HgaI	GACGC	2 cut(s)	17, 574
HhaI	GCGC	2 cut(s)	201, 247
Hin6I	GCGC	2 cut(s)	199, 245
HinP1I	GCGC	2 cut(s)	199, 245
HindIII	AAGCTT	1 cut(s)	47
HinfI	GANTC	3 cut(s)	80, 140, 219
HphI	GGTGA	2 cut(s)	55, 112
Hpy166II	GTNNAC	2 cut(s)	21, 84
Hpy188I	TCNGA	7 cut(s)	218, 374, 407, 529, 646, 750, 769
Hpy188III	TCNNGA	5 cut(s)	193, 415, 503, 518, 824
Hpy8I	GTNNAC	2 cut(s)	21, 84
Hpy99I	CGWCG	3 cut(s)	33, 128, 155
HpyAV	CCTTC	2 cut(s)	246, 279
HpyCH4III	ACNGT	1 cut(s)	37
HpyCH4IV	ACGT	2 cut(s)	385, 807
HpyCH4V	TGCA	2 cut(s)	279, 540
HpyF10VI	GCNNNNNNNGC	6 cut(s)	22, 428, 437, 458, 568, 582
HpyF3I	CTNAG	3 cut(s)	264, 552, 608
HpySE526I	ACGT	2 cut(s)	385, 807
HspAI	GCGC	2 cut(s)	199, 245
Kpn2I	TCCGGA	1 cut(s)	517
Ksp22I	TGATCA	1 cut(s)	204
Kzo9I	GATC	4 cut(s)	4, 204, 369, 390
LmnI	GCTCC	1 cut(s)	92
Lsp1109I	GCAGC	2 cut(s)	37, 439
LweI	GCATC	1 cut(s)	817
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	2 cut(s)	385, 807
MaeIII	GTNAC	2 cut(s)	118, 296
MalI	GATC	4 cut(s)	6, 206, 371, 392
MbiI	CCGCTC	2 cut(s)	284, 562
MboI	GATC	4 cut(s)	4, 204, 369, 390
MboII	GAAGA	3 cut(s)	236, 331, 542
MflI	RGATCY	2 cut(s)	369, 390
MhlI	GDGCHC	1 cut(s)	97
MluCI	AATT	6 cut(s)	303, 487, 507, 546, 655, 796
MlyI	GAGTC	2 cut(s)	89, 134
MmeI	TCCRAC	1 cut(s)	792
MroI	TCCGGA	1 cut(s)	517
MroXI	GAANNNNTTC	1 cut(s)	744
MseI	TTAA	1 cut(s)	465
MspR9I	CCNGG	4 cut(s)	77, 171, 185, 395
MvnI	CGCG	1 cut(s)	201
MwoI	GCNNNNNNNGC	6 cut(s)	22, 428, 437, 458, 568, 582
NciI	CCSGG	4 cut(s)	77, 171, 185, 395
NdeII	GATC	4 cut(s)	4, 204, 369, 390
NlaIV	GGNNCC	4 cut(s)	94, 188, 392, 471
NmeAIII	GCCGAG	2 cut(s)	190, 641
NmuCI	GTSAC	1 cut(s)	118
PcsI	WCGNNNNNNNCGW	2 cut(s)	198, 411
PdmI	GAANNNNTTC	1 cut(s)	744
PfeI	GAWTC	1 cut(s)	219
Pfl23II	CGTACG	1 cut(s)	334
PflMI	CCANNNNNTGG	1 cut(s)	386
PfoI	TCCNGGA	1 cut(s)	75
PkrI	GCNGC	5 cut(s)	27, 286, 364, 454, 578
PleI	GAGTC	2 cut(s)	88, 134
PpsI	GAGTC	2 cut(s)	88, 134
PpuMI	RGGWCCY	2 cut(s)	187, 470
Psp5II	RGGWCCY	2 cut(s)	187, 470
PspLI	CGTACG	1 cut(s)	334
PspN4I	GGNNCC	4 cut(s)	94, 188, 392, 471
PspPI	GGNCC	3 cut(s)	172, 187, 470
PspPPI	RGGWCCY	2 cut(s)	187, 470
PsuI	RGATCY	2 cut(s)	369, 390
RsaI	GTAC	3 cut(s)	20, 336, 735
RsaNI	GTAC	3 cut(s)	19, 335, 734
SaqAI	TTAA	1 cut(s)	465
SatI	GCNGC	5 cut(s)	26, 285, 363, 453, 577
Sau3AI	GATC	4 cut(s)	4, 204, 369, 390
Sau96I	GGNCC	3 cut(s)	172, 187, 470
SchI	GAGTC	2 cut(s)	89, 134
ScrFI	CCNGG	4 cut(s)	77, 171, 185, 395
SduI	GDGCHC	1 cut(s)	97
SetI	ASST	8 cut(s)	51, 63, 216, 278, 388, 475, 602, 810
SfaNI	GCATC	1 cut(s)	817
SinI	GGWCC	2 cut(s)	187, 470
SmlI	CTYRAG	1 cut(s)	494
SmoI	CTYRAG	1 cut(s)	494
Sse9I	AATT	6 cut(s)	303, 487, 507, 546, 655, 796
SsiI	CCGC	9 cut(s)	70, 284, 287, 362, 365, 422, 560, 576, 704
SspMI	CTAG	1 cut(s)	273
StyD4I	CCNGG	4 cut(s)	75, 169, 183, 393
TaaI	ACNGT	1 cut(s)	37
TaiI	ACGT	2 cut(s)	388, 810
TaqI	TCGA	5 cut(s)	7, 222, 414, 630, 717
TasI	AATT	6 cut(s)	303, 487, 507, 546, 655, 796
TatI	WGTACW	1 cut(s)	18
TauI	GCSGC	3 cut(s)	287, 365, 579
TfiI	GAWTC	1 cut(s)	219
Tru1I	TTAA	1 cut(s)	465
Tru9I	TTAA	1 cut(s)	465
TscAI	CASTG	2 cut(s)	578, 616
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	25, 452
Tsp45I	GTSAC	1 cut(s)	118
TspGWI	ACGGA	2 cut(s)	106, 689
TspRI	CASTG	2 cut(s)	578, 616
Van91I	CCANNNNNTGG	1 cut(s)	386
VpaK11BI	GGWCC	2 cut(s)	187, 470
XapI	RAATTY	2 cut(s)	303, 655
XmiI	GTMKAC	1 cut(s)	83
XmnI	GAANNNNTTC	1 cut(s)	744
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.