Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000367.1

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Forward (+)

677216 .. 679045

Gene Structure 1830 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000367.1_g000138.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgaacgcaggagacctcgccagataccttgcactcgagcttgttaggtccgcgaagcgccttggttggctttttggggagaaaaattgctgtgaatggcagagcaggaacagtggcggcggccgcatgagatgtgtcggagctattgatgcggagatccagttcatgcgtcgaagatctatccctaagattgtccggattttcgtcacagacgaggacgcgaccgacacctccagcgacgaagaagaacaagaccaacaacaacgactgacgaagagggtcatcaacgaagtgagaatcgaagaggagtctgaggcggtcagggtgtttctggccaagaatcagaagcaaaagccgaagcctttacagaaggagaagaggaagttccagggcgtacgacaacggccgtggggcaaatgggccaccgagattcgtgacccggtccgcaagtcccgtgtctggctcggaacgtttcagacggcggaggaggcggcgatggtgtacgacagagctgccattcagttgaggggacataacgctctcgcgaatatcatcgctcctccttccaaaattctcattccggatcacgattcttcttcgaatgagtccagttcgatcaacaatctttcttgttcgaatgcgtccagttcgaactaccatattgttgtgatagatgagtatgattccgggaaagagtgtcagaacattcgttcaacaacctctgttctcagtggtagtgaaaacgagtggagacctgggtcgaaggagcaggatgaaacccatttcgttaaagactatggttactttgatggtgtgatcagtcccactgaagctatattcttcggtgttacagagccgattctgttggaggaaatgaacttggtgccggaaacaatgttggtgacttcaaattcaaaaacccagctactaaatttagagcagaacatgttctcgggtggaggaatgggtgttcaattggagggcaagggcggcgttggaagcgagggagtgagcgtggaggtgaggacggcggcgttggaagcaagggagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048366 GO:0048367 GO:0048731 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

350

Amino Acids

39.21

Weight (kDa)

5.56

Isoelectric Point (pI)

55.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	883
AccII	CGCG	3 cut(s)	53, 221, 545
AccIII	TCCGGA	2 cut(s)	195, 580
AclI	AACGTT	1 cut(s)	470
AclWI	GGATC	2 cut(s)	151, 591
AcoI	YGGCCR	3 cut(s)	121, 333, 404
AcsI	RAATTY	3 cut(s)	570, 910, 931
AcuI	CTGAAG	1 cut(s)	849
AfaI	GTAC	2 cut(s)	396, 503
AfiI	CCNNNNNNNGG	1 cut(s)	459
AflIII	ACRYGT	1 cut(s)	945
AgsI	TTSAA	4 cut(s)	714, 909, 915, 974
AjnI	CCWGG	2 cut(s)	387, 754
AloI	GAACNNNNNNTCC	4 cut(s)	146, 178, 954, 986
AluBI	AGCT	5 cut(s)	40, 143, 512, 833, 925
AluI	AGCT	5 cut(s)	40, 143, 512, 833, 925
Alw26I	GTCTC	2 cut(s)	6, 745
AlwI	GGATC	2 cut(s)	151, 591
Ama87I	CYCGRG	2 cut(s)	35, 952
Aor13HI	TCCGGA	2 cut(s)	195, 580
AoxI	GGCC	4 cut(s)	121, 333, 404, 420
ApeKI	GCWGC	1 cut(s)	512
ApoI	RAATTY	3 cut(s)	570, 910, 931
Asp700I	GAANNNNTTC	1 cut(s)	947
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	3 cut(s)	48, 420, 442
AsuC2I	CCSGG	2 cut(s)	440, 688
AsuHPI	GGTGA	2 cut(s)	913, 1033
AsuII	TTCGAA	3 cut(s)	599, 635, 650
AvaI	CYCGRG	2 cut(s)	35, 952
AvaII	GGWCC	2 cut(s)	48, 442
BalI	TGGCCA	1 cut(s)	335
BanI	GGYRCC	1 cut(s)	883
BbvI	GCAGC	1 cut(s)	499
BccI	CCATC	2 cut(s)	490, 803
BceAI	ACGGC	4 cut(s)	391, 419, 495, 1044
BcgI	CGANNNNNNTGC	2 cut(s)	494, 528
BciT130I	CCWGG	2 cut(s)	389, 756
BclI	TGATCA	1 cut(s)	816
BcnI	CCSGG	2 cut(s)	440, 688
BcoDI	GTCTC	2 cut(s)	6, 745
BfoI	RGCGCY	1 cut(s)	61
BglII	AGATCT	1 cut(s)	176
BisI	GCNGC	7 cut(s)	118, 121, 124, 492, 513, 991, 1032
BlsI	GCNGC	7 cut(s)	119, 122, 125, 493, 514, 992, 1033
Bme1390I	CCNGG	4 cut(s)	389, 440, 688, 756
Bme18I	GGWCC	2 cut(s)	48, 442
BmeT110I	CYCGRG	2 cut(s)	35, 952
BmgT120I	GGNCC	3 cut(s)	48, 420, 442
BmiI	GGNNCC	1 cut(s)	885
BmrFI	CCNGG	4 cut(s)	389, 440, 688, 756
BmsI	GCATC	1 cut(s)	139
BoxI	GACNNNNGTC	1 cut(s)	757
BpmI	CTGGAG	1 cut(s)	217
Bpu14I	TTCGAA	3 cut(s)	599, 635, 650
BpuMI	CCSGG	2 cut(s)	440, 688
BsaI	GGTCTC	2 cut(s)	6, 745
BsaJI	CCNNGG	4 cut(s)	61, 388, 407, 755
BsaWI	WCCGGW	2 cut(s)	195, 580
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 999, 1029
Bsc4I	CCNNNNNNNGG	1 cut(s)	459
Bse1I	ACTGG	3 cut(s)	160, 609, 645
BseAI	TCCGGA	2 cut(s)	195, 580
BseBI	CCWGG	2 cut(s)	389, 756
BseDI	CCNNGG	4 cut(s)	61, 388, 407, 755
BseGI	GGATG	1 cut(s)	778
BseLI	CCNNNNNNNGG	1 cut(s)	459
BseMII	CTCAG	2 cut(s)	303, 742
BseNI	ACTGG	3 cut(s)	160, 609, 645
BseRI	GAGGAG	3 cut(s)	320, 500, 549
BseX3I	CGGCCG	2 cut(s)	121, 404
BseXI	GCAGC	1 cut(s)	499
BseYI	CCCAGC	1 cut(s)	921
Bsh1236I	CGCG	3 cut(s)	53, 221, 545
Bsh1285I	CGRYCG	3 cut(s)	124, 225, 407
BshFI	GGCC	4 cut(s)	123, 335, 406, 422
BshNI	GGYRCC	1 cut(s)	883
BsiEI	CGRYCG	3 cut(s)	124, 225, 407
BsiHKCI	CYCGRG	2 cut(s)	35, 952
BsiSI	CCGG	5 cut(s)	196, 440, 581, 687, 887
BsiWI	CGTACG	1 cut(s)	394
BslFI	GGGAC	3 cut(s)	436, 543, 807
BslI	CCNNNNNNNGG	1 cut(s)	459
BsmAI	GTCTC	2 cut(s)	6, 745
BsmFI	GGGAC	3 cut(s)	436, 543, 807
BsmI	GAATGC	1 cut(s)	643
BsnI	GGCC	4 cut(s)	123, 335, 406, 422
Bso31I	GGTCTC	2 cut(s)	6, 745
BsoBI	CYCGRG	2 cut(s)	35, 952
Bsp119I	TTCGAA	3 cut(s)	599, 635, 650
Bsp13I	TCCGGA	2 cut(s)	195, 580
Bsp143I	GATC	5 cut(s)	156, 176, 583, 615, 816
Bsp68I	TCGCGA	1 cut(s)	545
BspANI	GGCC	4 cut(s)	123, 335, 406, 422
BspCNI	CTCAG	2 cut(s)	304, 741
BspEI	TCCGGA	2 cut(s)	195, 580
BspFNI	CGCG	3 cut(s)	53, 221, 545
BspLI	GGNNCC	1 cut(s)	885
BspPI	GGATC	2 cut(s)	151, 591
BspT104I	TTCGAA	3 cut(s)	599, 635, 650
BspT107I	GGYRCC	1 cut(s)	883
BspTNI	GGTCTC	2 cut(s)	6, 745
BsrI	ACTGG	3 cut(s)	160, 609, 645
BssECI	CCNNGG	4 cut(s)	61, 388, 407, 755
BssMI	GATC	5 cut(s)	156, 176, 583, 615, 816
BssT1I	CCWWGG	1 cut(s)	61
Bst2UI	CCWGG	2 cut(s)	389, 756
Bst4CI	ACNGT	1 cut(s)	113
Bst6I	CTCTTC	3 cut(s)	269, 297, 371
BstBI	TTCGAA	3 cut(s)	599, 635, 650
BstDEI	CTNAG	3 cut(s)	186, 312, 728
BstDSI	CCRYGG	1 cut(s)	407
BstF5I	GGATG	1 cut(s)	778
BstFNI	CGCG	3 cut(s)	53, 221, 545
BstH2I	RGCGCY	1 cut(s)	61
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	5 cut(s)	159, 179, 586, 618, 819
BstMAI	GTCTC	2 cut(s)	6, 745
BstMBI	GATC	5 cut(s)	156, 176, 583, 615, 816
BstMCI	CGRYCG	3 cut(s)	124, 225, 407
BstMWI	GCNNNNNNNGC	6 cut(s)	123, 149, 488, 990, 999, 1040
BstNI	CCWGG	2 cut(s)	389, 756
BstNSI	RCATGY	1 cut(s)	949
BstPAI	GACNNNNGTC	1 cut(s)	757
BstSCI	CCNGG	4 cut(s)	387, 438, 686, 754
BstUI	CGCG	3 cut(s)	53, 221, 545
BstV1I	GCAGC	1 cut(s)	499
BstX2I	RGATCY	2 cut(s)	156, 176
BstYI	RGATCY	2 cut(s)	156, 176
BstZI	CGGCCG	2 cut(s)	121, 404
BsuRI	GGCC	4 cut(s)	123, 335, 406, 422
BtgI	CCRYGG	1 cut(s)	407
BtgZI	GCGATG	2 cut(s)	509, 538
BtsCI	GGATG	1 cut(s)	778
BtsIMutI	CAGTG	3 cut(s)	118, 736, 825
BtuMI	TCGCGA	1 cut(s)	545
CciNI	GCGGCCGC	1 cut(s)	121
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	3 cut(s)	48, 420, 442
CpoI	CGGWCCG	1 cut(s)	442
CseI	GACGC	3 cut(s)	158, 227, 630
Csp6I	GTAC	2 cut(s)	395, 502
CspCI	CAANNNNNGTGG	2 cut(s)	389, 424
CspI	CGGWCCG	1 cut(s)	442
CviAII	CATG	3 cut(s)	127, 166, 946
CviQI	GTAC	2 cut(s)	395, 502
DdeI	CTNAG	3 cut(s)	186, 312, 728
DpnI	GATC	5 cut(s)	158, 178, 585, 617, 818
DpnII	GATC	5 cut(s)	156, 176, 583, 615, 816
EaeI	YGGCCR	3 cut(s)	121, 333, 404
EagI	CGGCCG	2 cut(s)	121, 404
Eam1104I	CTCTTC	3 cut(s)	269, 297, 371
EarI	CTCTTC	3 cut(s)	269, 297, 371
EciI	GGCGGA	1 cut(s)	497
EclXI	CGGCCG	2 cut(s)	121, 404
Eco130I	CCWWGG	1 cut(s)	61
Eco31I	GGTCTC	2 cut(s)	6, 745
Eco47I	GGWCC	2 cut(s)	48, 442
Eco52I	CGGCCG	2 cut(s)	121, 404
Eco57I	CTGAAG	1 cut(s)	849
Eco88I	CYCGRG	2 cut(s)	35, 952
EcoRII	CCWGG	2 cut(s)	387, 754
EcoT14I	CCWWGG	1 cut(s)	61
ErhI	CCWWGG	1 cut(s)	61
FaeI	CATG	3 cut(s)	130, 169, 949
FaiI	YATR	8 cut(s)	128, 167, 534, 660, 681, 798, 836, 947
FaqI	GGGAC	3 cut(s)	436, 543, 807
FatI	CATG	3 cut(s)	126, 165, 945
FbaI	TGATCA	1 cut(s)	816
Fnu4HI	GCNGC	7 cut(s)	118, 121, 124, 492, 513, 991, 1032
FokI	GGATG	1 cut(s)	785
Fsp4HI	GCNGC	7 cut(s)	118, 121, 124, 492, 513, 991, 1032
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	7 cut(s)	118, 121, 124, 492, 513, 991, 1032
GsaI	CCCAGC	1 cut(s)	925
GsuI	CTGGAG	1 cut(s)	217
HaeII	RGCGCY	1 cut(s)	61
HaeIII	GGCC	4 cut(s)	123, 335, 406, 422
HapII	CCGG	5 cut(s)	196, 440, 581, 687, 887
HgaI	GACGC	3 cut(s)	158, 227, 630
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	3 cut(s)	130, 169, 949
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	8 cut(s)	297, 308, 340, 430, 590, 605, 683, 859
HpaII	CCGG	5 cut(s)	196, 440, 581, 687, 887
HphI	GGTGA	2 cut(s)	913, 1033
Hpy166II	GTNNAC	1 cut(s)	502
Hpy188I	TCNGA	6 cut(s)	140, 313, 345, 467, 477, 702
Hpy188III	TCNNGA	5 cut(s)	196, 434, 544, 581, 587
Hpy8I	GTNNAC	1 cut(s)	502
Hpy99I	CGWCG	2 cut(s)	174, 242
HpyAV	CCTTC	3 cut(s)	364, 573, 757
HpyCH4III	ACNGT	1 cut(s)	113
HpyCH4IV	ACGT	1 cut(s)	470
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	6 cut(s)	123, 149, 488, 990, 999, 1040
HpyF3I	CTNAG	3 cut(s)	186, 312, 728
HpySE526I	ACGT	1 cut(s)	470
Hsp92II	CATG	3 cut(s)	130, 169, 949
HspAI	GCGC	1 cut(s)	58
Kpn2I	TCCGGA	2 cut(s)	195, 580
Ksp22I	TGATCA	1 cut(s)	816
Kzo9I	GATC	5 cut(s)	156, 176, 583, 615, 816
LmnI	GCTCC	3 cut(s)	140, 562, 766
Lsp1109I	GCAGC	1 cut(s)	499
LweI	GCATC	1 cut(s)	139
MaeII	ACGT	1 cut(s)	470
MaeIII	GTNAC	5 cut(s)	205, 434, 800, 847, 901
MalI	GATC	5 cut(s)	158, 178, 585, 617, 818
MboI	GATC	5 cut(s)	156, 176, 583, 615, 816
MboII	GAAGA	9 cut(s)	186, 254, 257, 286, 314, 388, 585, 588, 832
MfeI	CAATTG	1 cut(s)	974
MflI	RGATCY	2 cut(s)	156, 176
MlsI	TGGCCA	1 cut(s)	335
MluCI	AATT	5 cut(s)	85, 570, 910, 931, 974
MluNI	TGGCCA	1 cut(s)	335
MlyI	GAGTC	2 cut(s)	317, 614
MmeI	TCCRAC	4 cut(s)	118, 846, 976, 1017
Mox20I	TGGCCA	1 cut(s)	335
MroI	TCCGGA	2 cut(s)	195, 580
MroXI	GAANNNNTTC	1 cut(s)	947
MscI	TGGCCA	1 cut(s)	335
MseI	TTAA	1 cut(s)	789
Msp20I	TGGCCA	1 cut(s)	335
MspI	CCGG	5 cut(s)	196, 440, 581, 687, 887
MspR9I	CCNGG	4 cut(s)	389, 440, 688, 756
MunI	CAATTG	1 cut(s)	974
Mva1269I	GAATGC	1 cut(s)	643
MvaI	CCWGG	2 cut(s)	389, 756
MvnI	CGCG	3 cut(s)	53, 221, 545
MwoI	GCNNNNNNNGC	6 cut(s)	123, 149, 488, 990, 999, 1040
NciI	CCSGG	2 cut(s)	440, 688
NdeII	GATC	5 cut(s)	156, 176, 583, 615, 816
NlaIII	CATG	3 cut(s)	130, 169, 949
NlaIV	GGNNCC	1 cut(s)	885
NmuCI	GTSAC	3 cut(s)	205, 434, 901
NotI	GCGGCCGC	1 cut(s)	121
NruI	TCGCGA	1 cut(s)	545
NspI	RCATGY	1 cut(s)	949
NspV	TTCGAA	3 cut(s)	599, 635, 650
PaeR7I	CTCGAG	1 cut(s)	35
PciI	ACATGT	1 cut(s)	945
PcsI	WCGNNNNNNNCGW	1 cut(s)	210
PctI	GAATGC	1 cut(s)	643
PdmI	GAANNNNTTC	1 cut(s)	947
PfeI	GAWTC	6 cut(s)	297, 340, 430, 590, 683, 859
Pfl23II	CGTACG	1 cut(s)	394
PflFI	GACNNNGTC	1 cut(s)	440
PfoI	TCCNGGA	1 cut(s)	686
PkrI	GCNGC	7 cut(s)	119, 122, 125, 493, 514, 992, 1033
PleI	GAGTC	2 cut(s)	316, 613
PpsI	GAGTC	2 cut(s)	316, 613
PscI	ACATGT	1 cut(s)	945
PshAI	GACNNNNGTC	1 cut(s)	757
Psp1406I	AACGTT	1 cut(s)	470
Psp6I	CCWGG	2 cut(s)	387, 754
PspFI	CCCAGC	1 cut(s)	921
PspGI	CCWGG	2 cut(s)	387, 754
PspLI	CGTACG	1 cut(s)	394
PspN4I	GGNNCC	1 cut(s)	885
PspPI	GGNCC	3 cut(s)	48, 420, 442
PspXI	VCTCGAGB	1 cut(s)	35
PsuI	RGATCY	2 cut(s)	156, 176
PsyI	GACNNNGTC	1 cut(s)	440
RruI	TCGCGA	1 cut(s)	545
RsaI	GTAC	2 cut(s)	396, 503
RsaNI	GTAC	2 cut(s)	395, 502
Rsr2I	CGGWCCG	1 cut(s)	442
RsrII	CGGWCCG	1 cut(s)	442
SaqAI	TTAA	1 cut(s)	789
SatI	GCNGC	7 cut(s)	118, 121, 124, 492, 513, 991, 1032
Sau3AI	GATC	5 cut(s)	156, 176, 583, 615, 816
Sau96I	GGNCC	3 cut(s)	48, 420, 442
SchI	GAGTC	2 cut(s)	317, 614
ScrFI	CCNGG	4 cut(s)	389, 440, 688, 756
SfaNI	GCATC	1 cut(s)	139
Sfr274I	CTCGAG	1 cut(s)	35
SfuI	TTCGAA	3 cut(s)	599, 635, 650
SinI	GGWCC	2 cut(s)	48, 442
SlaI	CTCGAG	1 cut(s)	35
SmlI	CTYRAG	1 cut(s)	35
SmoI	CTYRAG	1 cut(s)	35
Sse9I	AATT	5 cut(s)	85, 570, 910, 931, 974
StyD4I	CCNGG	4 cut(s)	387, 438, 686, 754
StyI	CCWWGG	1 cut(s)	61
TaaI	ACNGT	1 cut(s)	113
TaiI	ACGT	1 cut(s)	473
TaqI	TCGA	8 cut(s)	36, 172, 300, 599, 614, 635, 650, 761
TaqII	GACCGA	1 cut(s)	239
TasI	AATT	5 cut(s)	85, 570, 910, 931, 974
TauI	GCSGC	6 cut(s)	120, 123, 126, 494, 993, 1034
TfiI	GAWTC	6 cut(s)	297, 340, 430, 590, 683, 859
Tru1I	TTAA	1 cut(s)	789
Tru9I	TTAA	1 cut(s)	789
TscAI	CASTG	3 cut(s)	118, 736, 832
TseFI	GTSAC	3 cut(s)	205, 434, 901
TseI	GCWGC	1 cut(s)	512
Tsp45I	GTSAC	3 cut(s)	205, 434, 901
TspDTI	ATGAA	4 cut(s)	17, 154, 789, 890
TspRI	CASTG	3 cut(s)	118, 736, 832
Tth111I	GACNNNGTC	1 cut(s)	440
VpaK11BI	GGWCC	2 cut(s)	48, 442
XapI	RAATTY	3 cut(s)	570, 910, 931
XceI	RCATGY	1 cut(s)	949
XhoI	CTCGAG	1 cut(s)	35
XmnI	GAANNNNTTC	1 cut(s)	947

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.