Rh1CG262200

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1C
OG0006158
Physical Location & Seq
Forward (+)
52644444 .. 52645825
1382 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1CG262200.1

Sequence Viewer

Length: 906 bp
ATGGATTCAAACTACCCAACCAAGTACACGGAGAAGAGGACCCTCACCAAGAAGCTTGTCAAGCATTTCCCGAACGTTGCAGTCCCTAAGATTGTCCGGATTTCCGTCACCGACGAGGACGCAACCGACACGTCCAGCGACGAAGAAGAACAGGACCAACAACAACAACGACTGACGAAGAGGGTCATCAACGAAGTGAGAATAGAAGAGGAGTCCGAGGCTGTCAGGGTGTTGCTGGCCAAGAATCAGAAGCCAAAGACGAAGCCTTTGCCGGAGGAGAAGAGGAAGTTCCGGGGCGTACGGCAGCGGCCGTGGGGAAAATGGGCCGCCGAGATTCGTGACCCGGTCCGCAAGTCCCGTGTCTGGCTCGGAACGTTCCAGACGGCGGAGGAGGCAGCGTTGGTGTACGACAGAGCTGCCATTCAGTTGAGGGGACATAACGCTCTCACGAATATCATCGCTCCTCCTTCCAAAGTTCTCATTTCGGATCACGATTCTTCTTCGAACGAGTCCAGTTCGATCAACAATCTTTCTTGTTCGAATGCGTCCAGTTCGATCGACCATATTGTTGTGATAGATGAGTATGATTGCGGGAAAGAGTGCCAGAGCATTCGCTCCCCGACCTCTGTTCTCTGTGGTAGGGACAACGAGTGGAGGCCTGGGTCGACGGAGCAAGATGAAACCCATTTCGTTAAAGACTACGGTTACTTTGATGGTGTGATCAGTTCCACTGAAGCTATATTCTTCGGTGCTACGGAGCCGATTCTGTTGGAGGACATGAACTTGGTGCCGGAAACAATGTTGCGAGACGATTTGTCCGACATTTCGCTGGATTCGGTTGGGGATTTCAGGTCATGTAAATGGAATGTGGAGGATTTCTTTCAAGATCAATGTGGTGGTTTCTGA

Protein Analysis

301

Amino Acids

34.14

Weight (kDa)

5.05

Isoelectric Point (pI)

58.88

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 96 - 146 4.6e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 787
AccI GTMKAC 1 cut(s) 665
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 5 cut(s) 307, 327, 349, 386, 591
AclI AACGTT 2 cut(s) 75, 374
AclWI GGATC 1 cut(s) 495
AcoI YGGCCR 2 cut(s) 237, 308
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 3 cut(s) 26, 300, 407
AfiI CCNNNNNNNGG 2 cut(s) 363, 385
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 9, 884
AhdI GACNNNNNGTC 1 cut(s) 814
AjiI CACGTC 1 cut(s) 132
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 3 cut(s) 55, 416, 737
AluI AGCT 3 cut(s) 55, 416, 737
Alw26I GTCTC 1 cut(s) 801
AlwI GGATC 1 cut(s) 495
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 4 cut(s) 237, 308, 324, 656
ApeKI GCWGC 3 cut(s) 304, 395, 416
ArsI GACNNNNNNTTYG 2 cut(s) 250, 282
AspS9I GGNCC 4 cut(s) 39, 154, 324, 346
AsuC2I CCSGG 2 cut(s) 293, 344
AsuHPI GGTGA 2 cut(s) 37, 100
AsuII TTCGAA 2 cut(s) 503, 539
AvaII GGWCC 3 cut(s) 39, 154, 346
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 787
BbvI GCAGC 3 cut(s) 316, 403, 407
BccI CCATC 1 cut(s) 707
BceAI ACGGC 3 cut(s) 295, 317, 399
BcgI CGANNNNNNTGC 4 cut(s) 250, 284, 398, 432
BciT130I CCWGG 1 cut(s) 660
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 2 cut(s) 293, 344
BcoDI GTCTC 1 cut(s) 801
BisI GCNGC 5 cut(s) 305, 308, 327, 396, 417
BlsI GCNGC 5 cut(s) 306, 309, 328, 397, 418
Bme1390I CCNGG 3 cut(s) 293, 344, 660
Bme18I GGWCC 3 cut(s) 39, 154, 346
BmeRI GACNNNNNGTC 1 cut(s) 814
BmgBI CACGTC 1 cut(s) 132
BmgT120I GGNCC 4 cut(s) 39, 154, 324, 346
BmiI GGNNCC 3 cut(s) 41, 759, 789
BmrFI CCNGG 3 cut(s) 293, 344, 660
Bpu14I TTCGAA 2 cut(s) 503, 539
BpuMI CCSGG 2 cut(s) 293, 344
BsaJI CCNNGG 4 cut(s) 216, 292, 311, 659
BsaWI WCCGGW 1 cut(s) 96
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 385
Bse1I ACTGG 2 cut(s) 513, 549
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 4 cut(s) 216, 292, 311, 659
BseLI CCNNNNNNNGG 2 cut(s) 363, 385
BseNI ACTGG 2 cut(s) 513, 549
BseRI GAGGAG 4 cut(s) 224, 290, 404, 453
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 316, 403, 407
Bsh1285I CGRYCG 2 cut(s) 311, 558
BshFI GGCC 4 cut(s) 239, 310, 326, 658
BshNI GGYRCC 1 cut(s) 787
BsiEI CGRYCG 2 cut(s) 311, 558
BsiSI CCGG 5 cut(s) 97, 272, 292, 344, 791
BsiWI CGTACG 1 cut(s) 298
BslFI GGGAC 4 cut(s) 68, 340, 447, 656
BslI CCNNNNNNNGG 2 cut(s) 363, 385
BsmAI GTCTC 1 cut(s) 801
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 4 cut(s) 68, 340, 447, 656
BsmI GAATGC 2 cut(s) 547, 609
BsnI GGCC 4 cut(s) 239, 310, 326, 658
Bsp119I TTCGAA 2 cut(s) 503, 539
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 5 cut(s) 487, 519, 555, 720, 886
BspACI CCGC 5 cut(s) 307, 327, 349, 386, 591
BspANI GGCC 4 cut(s) 239, 310, 326, 658
BspEI TCCGGA 1 cut(s) 96
BspLI GGNNCC 3 cut(s) 41, 759, 789
BspPI GGATC 1 cut(s) 495
BspT104I TTCGAA 2 cut(s) 503, 539
BspT107I GGYRCC 1 cut(s) 787
BsrI ACTGG 2 cut(s) 513, 549
BssECI CCNNGG 4 cut(s) 216, 292, 311, 659
BssMI GATC 5 cut(s) 487, 519, 555, 720, 886
Bst2UI CCWGG 1 cut(s) 660
Bst4CI ACNGT 1 cut(s) 704
Bst6I CTCTTC 4 cut(s) 29, 173, 201, 275
BstBI TTCGAA 2 cut(s) 503, 539
BstC8I GCNNGC 1 cut(s) 237
BstDEI CTNAG 1 cut(s) 87
BstDSI CCRYGG 1 cut(s) 311
BstKTI GATC 5 cut(s) 490, 522, 558, 723, 889
BstMAI GTCTC 1 cut(s) 801
BstMBI GATC 5 cut(s) 487, 519, 555, 720, 886
BstMCI CGRYCG 2 cut(s) 311, 558
BstMWI GCNNNNNNNGC 2 cut(s) 61, 392
BstNI CCWGG 1 cut(s) 660
BstSCI CCNGG 3 cut(s) 291, 342, 658
BstV1I GCAGC 3 cut(s) 316, 403, 407
BstZI CGGCCG 1 cut(s) 308
BsuRI GGCC 4 cut(s) 239, 310, 326, 658
BtgI CCRYGG 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 442
BtrI CACGTC 1 cut(s) 132
BtsIMutI CAGTG 1 cut(s) 729
Cac8I GCNNGC 1 cut(s) 237
Cfr13I GGNCC 4 cut(s) 39, 154, 324, 346
CpoI CGGWCCG 1 cut(s) 346
CseI GACGC 2 cut(s) 128, 534
Csp6I GTAC 3 cut(s) 25, 299, 406
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 2 cut(s) 778, 855
CviQI GTAC 3 cut(s) 25, 299, 406
DdeI CTNAG 1 cut(s) 87
DpnI GATC 5 cut(s) 489, 521, 557, 722, 888
DpnII GATC 5 cut(s) 487, 519, 555, 720, 886
DriI GACNNNNNGTC 1 cut(s) 814
EaeI YGGCCR 2 cut(s) 237, 308
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 4 cut(s) 29, 173, 201, 275
Eam1105I GACNNNNNGTC 1 cut(s) 814
EarI CTCTTC 4 cut(s) 29, 173, 201, 275
EciI GGCGGA 1 cut(s) 401
EclXI CGGCCG 1 cut(s) 308
Eco147I AGGCCT 1 cut(s) 658
Eco47I GGWCC 3 cut(s) 39, 154, 346
Eco52I CGGCCG 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 753
EcoO109I RGGNCCY 1 cut(s) 39
EcoRII CCWGG 1 cut(s) 658
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 2 cut(s) 781, 858
FaiI YATR 6 cut(s) 438, 564, 585, 740, 779, 856
FaqI GGGAC 4 cut(s) 68, 340, 447, 656
FatI CATG 2 cut(s) 777, 854
FauI CCCGC 1 cut(s) 584
FbaI TGATCA 1 cut(s) 720
FblI GTMKAC 1 cut(s) 665
Fnu4HI GCNGC 5 cut(s) 305, 308, 327, 396, 417
Fsp4HI GCNGC 5 cut(s) 305, 308, 327, 396, 417
GluI GCNGC 5 cut(s) 305, 308, 327, 396, 417
HaeIII GGCC 4 cut(s) 239, 310, 326, 658
HapII CCGG 5 cut(s) 97, 272, 292, 344, 791
HgaI GACGC 2 cut(s) 128, 534
Hin1II CATG 2 cut(s) 781, 858
HincII GTYRAC 1 cut(s) 666
HindII GTYRAC 1 cut(s) 666
HindIII AAGCTT 1 cut(s) 53
HinfI GANTC 8 cut(s) 5, 212, 244, 334, 494, 509, 763, 833
HpaII CCGG 5 cut(s) 97, 272, 292, 344, 791
HphI GGTGA 2 cut(s) 37, 100
Hpy166II GTNNAC 3 cut(s) 27, 406, 666
Hpy188I TCNGA 6 cut(s) 217, 249, 371, 487, 820, 905
Hpy188III TCNNGA 7 cut(s) 70, 97, 338, 379, 448, 491, 884
Hpy8I GTNNAC 3 cut(s) 27, 406, 666
Hpy99I CGWCG 3 cut(s) 116, 143, 670
HpyAV CCTTC 1 cut(s) 477
HpyCH4III ACNGT 1 cut(s) 704
HpyCH4IV ACGT 3 cut(s) 75, 131, 374
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 392
HpyF3I CTNAG 1 cut(s) 87
HpySE526I ACGT 3 cut(s) 75, 131, 374
Hsp92II CATG 2 cut(s) 781, 858
Kpn2I TCCGGA 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 5 cut(s) 487, 519, 555, 720, 886
LmnI GCTCC 4 cut(s) 466, 620, 670, 757
Lsp1109I GCAGC 3 cut(s) 316, 403, 407
MaeII ACGT 3 cut(s) 75, 131, 374
MaeIII GTNAC 3 cut(s) 106, 338, 704
MalI GATC 5 cut(s) 489, 521, 557, 722, 888
MboI GATC 5 cut(s) 487, 519, 555, 720, 886
MboII GAAGA 9 cut(s) 46, 155, 158, 190, 218, 292, 489, 492, 736
MlsI TGGCCA 1 cut(s) 239
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 2 cut(s) 221, 518
MmeI TCCRAC 2 cut(s) 750, 843
Mox20I TGGCCA 1 cut(s) 239
MroI TCCGGA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 1 cut(s) 859
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 5 cut(s) 97, 272, 292, 344, 791
MspR9I CCNGG 3 cut(s) 293, 344, 660
Mva1269I GAATGC 2 cut(s) 547, 609
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 2 cut(s) 61, 392
NciI CCSGG 2 cut(s) 293, 344
NdeII GATC 5 cut(s) 487, 519, 555, 720, 886
NlaIII CATG 2 cut(s) 781, 858
NlaIV GGNNCC 3 cut(s) 41, 759, 789
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 2 cut(s) 106, 338
NspV TTCGAA 2 cut(s) 503, 539
PceI AGGCCT 1 cut(s) 658
PcsI WCGNNNNNNNCGW 1 cut(s) 816
PctI GAATGC 2 cut(s) 547, 609
PfeI GAWTC 6 cut(s) 5, 244, 334, 494, 763, 833
Pfl23II CGTACG 1 cut(s) 298
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 5 cut(s) 306, 309, 328, 397, 418
Ple19I CGATCG 1 cut(s) 558
PleI GAGTC 2 cut(s) 220, 517
PpsI GAGTC 2 cut(s) 220, 517
PpuMI RGGWCCY 1 cut(s) 39
Psp1406I AACGTT 2 cut(s) 75, 374
Psp5II RGGWCCY 1 cut(s) 39
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspLI CGTACG 1 cut(s) 298
PspN4I GGNNCC 3 cut(s) 41, 759, 789
PspPI GGNCC 4 cut(s) 39, 154, 324, 346
PspPPI RGGWCCY 1 cut(s) 39
PsyI GACNNNGTC 1 cut(s) 344
PvuI CGATCG 1 cut(s) 558
RsaI GTAC 3 cut(s) 26, 300, 407
RsaNI GTAC 3 cut(s) 25, 299, 406
RseI CAYNNNNRTG 1 cut(s) 859
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SalI GTCGAC 1 cut(s) 664
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 5 cut(s) 305, 308, 327, 396, 417
Sau3AI GATC 5 cut(s) 487, 519, 555, 720, 886
Sau96I GGNCC 4 cut(s) 39, 154, 324, 346
SchI GAGTC 2 cut(s) 221, 518
ScrFI CCNGG 3 cut(s) 293, 344, 660
SetI ASST 8 cut(s) 57, 78, 134, 377, 418, 626, 739, 854
SfuI TTCGAA 2 cut(s) 503, 539
SinI GGWCC 3 cut(s) 39, 154, 346
SmiMI CAYNNNNRTG 1 cut(s) 859
SseBI AGGCCT 1 cut(s) 658
SsiI CCGC 5 cut(s) 307, 327, 349, 386, 591
StuI AGGCCT 1 cut(s) 658
StyD4I CCNGG 3 cut(s) 291, 342, 658
TaaI ACNGT 1 cut(s) 704
TaiI ACGT 3 cut(s) 78, 134, 377
TaqI TCGA 6 cut(s) 503, 518, 539, 554, 558, 665
TatI WGTACW 1 cut(s) 24
TauI GCSGC 2 cut(s) 310, 329
TfiI GAWTC 6 cut(s) 5, 244, 334, 494, 763, 833
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 1 cut(s) 736
TseFI GTSAC 2 cut(s) 106, 338
TseI GCWGC 3 cut(s) 304, 395, 416
Tsp45I GTSAC 2 cut(s) 106, 338
TspDTI ATGAA 2 cut(s) 693, 794
TspGWI ACGGA 4 cut(s) 44, 94, 683, 770
TspRI CASTG 1 cut(s) 736
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 3 cut(s) 39, 154, 346
XmiI GTMKAC 1 cut(s) 665
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.