Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8269835.1

Orthogroup ID

OG0006158

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 572

Gene Structure 571 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8269835.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 571 bp

atggattcaaactacccaaccaagtacacggagaagaggaccctcaccaagaagcttgtcaagcatttcccgaacgttgcagtccctaagattgtccggatttccgtcaccgacgaggacgcaaccgacacgtccagcgacgaagaagaacaagaccaacaacaacaacgactgacgaagagggtcatcaacgaagtgagaatcgaagaggagtccgaggctgtcagggtgttgctggccaagaatcagaagccaaagccgaagcctttgccggaggagaagaggaagttccggggcgtacggcagcggccgtggggcaaatgggccgccgagattcgtgacccggtccgcaagtcccgtgtctggctcggaacgttccagacggcggaggaggcagcgttggtgtacgacagagctgccattcagttgaggggacataacgctctcacgaatatcatcgctcctccttccaaagttctcatttcggatcacgattcttcttcgaacgagtccagttcgatgaacaatctttcttgttcgaatgcgtccagttcgatcgaccatattgttg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003700 GO:0006355 GO:0007275 GO:0008150 GO:0009790 GO:0009791 GO:0009793 GO:0009889 GO:0010154 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0022414 GO:0031323 GO:0031326 GO:0032501 GO:0032502 GO:0048316 GO:0048366 GO:0048367 GO:0048608 GO:0048731 GO:0048825 GO:0048827 GO:0048856 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0061458 GO:0065007 GO:0080090 GO:0099402 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

AP2

Protein Analysis

190

Amino Acids

21.59

Weight (kDa)

9.16

Isoelectric Point (pI)

59.76

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006158)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46310 AT3G61630
fragaria_vesca	FvH4_7g15860
malus_domestica	MD01G1075400.v1.1
prunus_persica	Prupe.2G183200_v2.0.a1
pyrus_communis	pycom01g10430 pycom07g14280
rosa_chinensis	RchiOBHm_Chr1g0358681 RchiOBHm_Chr2g0166851 RchiOBHm_Chr6g0276671
rosa_laevigata	RLG00000027936
rosa_multiflora	Rmu_co8269835.1_g000001 Rmu_sc0000367.1_g000138 Rmu_sc0000612.1_g000006 Rmu_sc0001609.1_g000030 Rmu_sc0001932.1_g000011
rosa_roxburghii	Rroxscaffold_4G00297710
rosa_rugosa	Rorug01G0264100
rosa_samantha	Rh1AG278600 Rh1BG245300 Rh1CG262200 Rh1DG273600 Rh2CG575100 Rh6BG233400
rosa_wichuraiana	Rw1G024730 Rw2G049340 Rw5G035980

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	96
AciI	CCGC	4 cut(s)	307, 327, 349, 386
AclI	AACGTT	2 cut(s)	75, 374
AclWI	GGATC	1 cut(s)	495
AcoI	YGGCCR	2 cut(s)	237, 308
AfaI	GTAC	3 cut(s)	26, 300, 407
AfiI	CCNNNNNNNGG	2 cut(s)	363, 385
AflIII	ACRYGT	1 cut(s)	129
AgsI	TTSAA	1 cut(s)	9
AjiI	CACGTC	1 cut(s)	132
AluBI	AGCT	2 cut(s)	55, 416
AluI	AGCT	2 cut(s)	55, 416
AlwI	GGATC	1 cut(s)	495
Aor13HI	TCCGGA	1 cut(s)	96
AoxI	GGCC	3 cut(s)	237, 308, 324
ApeKI	GCWGC	3 cut(s)	304, 395, 416
AspS9I	GGNCC	3 cut(s)	39, 324, 346
AsuC2I	CCSGG	2 cut(s)	293, 344
AsuHPI	GGTGA	2 cut(s)	37, 100
AsuII	TTCGAA	2 cut(s)	503, 539
AvaII	GGWCC	2 cut(s)	39, 346
BalI	TGGCCA	1 cut(s)	239
BbvI	GCAGC	3 cut(s)	316, 403, 407
BceAI	ACGGC	3 cut(s)	295, 317, 399
BcgI	CGANNNNNNTGC	4 cut(s)	250, 284, 398, 432
BcnI	CCSGG	2 cut(s)	293, 344
BisI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
BlsI	GCNGC	5 cut(s)	306, 309, 328, 397, 418
Bme1390I	CCNGG	2 cut(s)	293, 344
Bme18I	GGWCC	2 cut(s)	39, 346
BmgBI	CACGTC	1 cut(s)	132
BmgT120I	GGNCC	3 cut(s)	39, 324, 346
BmiI	GGNNCC	1 cut(s)	41
BmrFI	CCNGG	2 cut(s)	293, 344
Bpu14I	TTCGAA	2 cut(s)	503, 539
BpuMI	CCSGG	2 cut(s)	293, 344
BsaJI	CCNNGG	3 cut(s)	216, 292, 311
BsaWI	WCCGGW	1 cut(s)	96
BsaXI	ACNNNNNCTCC	2 cut(s)	383, 413
Bsc4I	CCNNNNNNNGG	2 cut(s)	363, 385
Bse1I	ACTGG	2 cut(s)	513, 549
BseAI	TCCGGA	1 cut(s)	96
BseDI	CCNNGG	3 cut(s)	216, 292, 311
BseLI	CCNNNNNNNGG	2 cut(s)	363, 385
BseNI	ACTGG	2 cut(s)	513, 549
BseRI	GAGGAG	4 cut(s)	224, 290, 404, 453
BseX3I	CGGCCG	1 cut(s)	308
BseXI	GCAGC	3 cut(s)	316, 403, 407
Bsh1285I	CGRYCG	2 cut(s)	311, 558
BshFI	GGCC	3 cut(s)	239, 310, 326
BsiEI	CGRYCG	2 cut(s)	311, 558
BsiSI	CCGG	4 cut(s)	97, 272, 292, 344
BsiWI	CGTACG	1 cut(s)	298
BslFI	GGGAC	3 cut(s)	68, 340, 447
BslI	CCNNNNNNNGG	2 cut(s)	363, 385
BsmFI	GGGAC	3 cut(s)	68, 340, 447
BsmI	GAATGC	1 cut(s)	547
BsnI	GGCC	3 cut(s)	239, 310, 326
Bsp119I	TTCGAA	2 cut(s)	503, 539
Bsp13I	TCCGGA	1 cut(s)	96
Bsp143I	GATC	2 cut(s)	487, 555
BspACI	CCGC	4 cut(s)	307, 327, 349, 386
BspANI	GGCC	3 cut(s)	239, 310, 326
BspEI	TCCGGA	1 cut(s)	96
BspLI	GGNNCC	1 cut(s)	41
BspPI	GGATC	1 cut(s)	495
BspT104I	TTCGAA	2 cut(s)	503, 539
BsrI	ACTGG	2 cut(s)	513, 549
BssECI	CCNNGG	3 cut(s)	216, 292, 311
BssMI	GATC	2 cut(s)	487, 555
Bst6I	CTCTTC	4 cut(s)	29, 173, 201, 275
BstBI	TTCGAA	2 cut(s)	503, 539
BstC8I	GCNNGC	1 cut(s)	237
BstDEI	CTNAG	1 cut(s)	87
BstDSI	CCRYGG	1 cut(s)	311
BstKTI	GATC	2 cut(s)	490, 558
BstMBI	GATC	2 cut(s)	487, 555
BstMCI	CGRYCG	2 cut(s)	311, 558
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 392
BstSCI	CCNGG	2 cut(s)	291, 342
BstV1I	GCAGC	3 cut(s)	316, 403, 407
BstZI	CGGCCG	1 cut(s)	308
BsuRI	GGCC	3 cut(s)	239, 310, 326
BtgI	CCRYGG	1 cut(s)	311
BtgZI	GCGATG	1 cut(s)	442
BtrI	CACGTC	1 cut(s)	132
Cac8I	GCNNGC	1 cut(s)	237
Cfr13I	GGNCC	3 cut(s)	39, 324, 346
CpoI	CGGWCCG	1 cut(s)	346
CseI	GACGC	2 cut(s)	128, 534
Csp6I	GTAC	3 cut(s)	25, 299, 406
CspI	CGGWCCG	1 cut(s)	346
CviQI	GTAC	3 cut(s)	25, 299, 406
DdeI	CTNAG	1 cut(s)	87
DpnI	GATC	2 cut(s)	489, 557
DpnII	GATC	2 cut(s)	487, 555
EaeI	YGGCCR	2 cut(s)	237, 308
EagI	CGGCCG	1 cut(s)	308
Eam1104I	CTCTTC	4 cut(s)	29, 173, 201, 275
EarI	CTCTTC	4 cut(s)	29, 173, 201, 275
EciI	GGCGGA	1 cut(s)	401
EclXI	CGGCCG	1 cut(s)	308
Eco47I	GGWCC	2 cut(s)	39, 346
Eco52I	CGGCCG	1 cut(s)	308
EcoO109I	RGGNCCY	1 cut(s)	39
FaiI	YATR	2 cut(s)	438, 564
FaqI	GGGAC	3 cut(s)	68, 340, 447
Fnu4HI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
Fsp4HI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
GluI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
HaeIII	GGCC	3 cut(s)	239, 310, 326
HapII	CCGG	4 cut(s)	97, 272, 292, 344
HgaI	GACGC	2 cut(s)	128, 534
HindIII	AAGCTT	1 cut(s)	53
HinfI	GANTC	7 cut(s)	5, 201, 212, 244, 334, 494, 509
HpaII	CCGG	4 cut(s)	97, 272, 292, 344
HphI	GGTGA	2 cut(s)	37, 100
Hpy166II	GTNNAC	2 cut(s)	27, 406
Hpy188I	TCNGA	4 cut(s)	217, 249, 371, 487
Hpy188III	TCNNGA	6 cut(s)	70, 97, 338, 379, 448, 491
Hpy8I	GTNNAC	2 cut(s)	27, 406
Hpy99I	CGWCG	2 cut(s)	116, 143
HpyAV	CCTTC	1 cut(s)	477
HpyCH4IV	ACGT	3 cut(s)	75, 131, 374
HpyCH4V	TGCA	1 cut(s)	80
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 392
HpyF3I	CTNAG	1 cut(s)	87
HpySE526I	ACGT	3 cut(s)	75, 131, 374
Kpn2I	TCCGGA	1 cut(s)	96
Kzo9I	GATC	2 cut(s)	487, 555
LmnI	GCTCC	1 cut(s)	466
Lsp1109I	GCAGC	3 cut(s)	316, 403, 407
MaeII	ACGT	3 cut(s)	75, 131, 374
MaeIII	GTNAC	2 cut(s)	106, 338
MalI	GATC	2 cut(s)	489, 557
MboI	GATC	2 cut(s)	487, 555
MboII	GAAGA	8 cut(s)	46, 155, 158, 190, 218, 292, 489, 492
MlsI	TGGCCA	1 cut(s)	239
MluNI	TGGCCA	1 cut(s)	239
MlyI	GAGTC	2 cut(s)	221, 518
Mox20I	TGGCCA	1 cut(s)	239
MroI	TCCGGA	1 cut(s)	96
MscI	TGGCCA	1 cut(s)	239
Msp20I	TGGCCA	1 cut(s)	239
MspA1I	CMGCKG	1 cut(s)	307
MspI	CCGG	4 cut(s)	97, 272, 292, 344
MspR9I	CCNGG	2 cut(s)	293, 344
Mva1269I	GAATGC	1 cut(s)	547
MwoI	GCNNNNNNNGC	2 cut(s)	61, 392
NciI	CCSGG	2 cut(s)	293, 344
NdeII	GATC	2 cut(s)	487, 555
NlaIV	GGNNCC	1 cut(s)	41
NmeAIII	GCCGAG	1 cut(s)	355
NmuCI	GTSAC	2 cut(s)	106, 338
NspV	TTCGAA	2 cut(s)	503, 539
PctI	GAATGC	1 cut(s)	547
PfeI	GAWTC	5 cut(s)	5, 201, 244, 334, 494
Pfl23II	CGTACG	1 cut(s)	298
PflFI	GACNNNGTC	1 cut(s)	344
PkrI	GCNGC	5 cut(s)	306, 309, 328, 397, 418
Ple19I	CGATCG	1 cut(s)	558
PleI	GAGTC	2 cut(s)	220, 517
PpsI	GAGTC	2 cut(s)	220, 517
PpuMI	RGGWCCY	1 cut(s)	39
Psp1406I	AACGTT	2 cut(s)	75, 374
Psp5II	RGGWCCY	1 cut(s)	39
PspLI	CGTACG	1 cut(s)	298
PspN4I	GGNNCC	1 cut(s)	41
PspPI	GGNCC	3 cut(s)	39, 324, 346
PspPPI	RGGWCCY	1 cut(s)	39
PsyI	GACNNNGTC	1 cut(s)	344
PvuI	CGATCG	1 cut(s)	558
RsaI	GTAC	3 cut(s)	26, 300, 407
RsaNI	GTAC	3 cut(s)	25, 299, 406
Rsr2I	CGGWCCG	1 cut(s)	346
RsrII	CGGWCCG	1 cut(s)	346
SatI	GCNGC	5 cut(s)	305, 308, 327, 396, 417
Sau3AI	GATC	2 cut(s)	487, 555
Sau96I	GGNCC	3 cut(s)	39, 324, 346
SchI	GAGTC	2 cut(s)	221, 518
ScrFI	CCNGG	2 cut(s)	293, 344
SetI	ASST	5 cut(s)	57, 78, 134, 377, 418
SfuI	TTCGAA	2 cut(s)	503, 539
SinI	GGWCC	2 cut(s)	39, 346
SsiI	CCGC	4 cut(s)	307, 327, 349, 386
StyD4I	CCNGG	2 cut(s)	291, 342
TaiI	ACGT	3 cut(s)	78, 134, 377
TaqI	TCGA	6 cut(s)	204, 503, 518, 539, 554, 558
TatI	WGTACW	1 cut(s)	24
TauI	GCSGC	2 cut(s)	310, 329
TfiI	GAWTC	5 cut(s)	5, 201, 244, 334, 494
TseFI	GTSAC	2 cut(s)	106, 338
TseI	GCWGC	3 cut(s)	304, 395, 416
Tsp45I	GTSAC	2 cut(s)	106, 338
TspDTI	ATGAA	1 cut(s)	536
TspGWI	ACGGA	2 cut(s)	44, 94
Tth111I	GACNNNGTC	1 cut(s)	344
VpaK11BI	GGWCC	2 cut(s)	39, 346

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.