Rh1DG273600

transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0006158
Physical Location & Seq
Forward (+)
49347161 .. 49348559
1399 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG273600.1

Sequence Viewer

Length: 906 bp
ATGGATTCAAACTACCCAACCAAGTACACGGAGAAGAGGACTCTCACCAAGAAGCTTGTCAAGCATTTCCCGAACGTTGCAGTCCCTAAGATTGTCCGGATTTCCGTCACCGACGAGGACGCAACCGACACGTCCAGCGACGAAGAAGAACAAGACCAACAACAACAACGACTGACGAAGAGGGTCATCAACGAAGTGAGAATCGAAGAGGAGTCCGAGGCTGTCAGGGTGTTTCTGGCCAAGAATCAGAAGCAAAAGCCGAAGCCTTTACCGGAGGAGAAGAGGAAGTTCCGGGGCGTACGGCAGCGGCCGTGGGGCAAATGGGCCGCCGAGATTCGTGACCCGGTCCGCAAGTCCCGTGTCTGGCTCGGAACGTTCCACACGGCGGAGGAGGCAGCGTTGGTGTACGACAGAGCTGCCATTCAGTTGAGGGGACATAACGCTCTCACGAATATCATCGCTCCTCCTTCCAAAATTCTCATTTCGGATCACGATTCTTCTTCGAATGAGTCCAGTTCGATCAACAATGTTTCTTGTTCGAATGCGTCCAGTTCGATCGACCATATTGTTGTGATAGATGAGTATGATTGCGGGAAAGAATGTCAGAGCATTCGCTCCCCGACCTCTGTTCTCAGTGGTAGTGACAACGAGTGGAGACCTGGGTCGAAGGAGCAAGATGAAACCCATTTCGTTAAAGACTATGGTTACTTTGATGGTGTGATCAGTCCCACTGAAGCTATATTCTTCGGGGTTACAGAGCCGATTCTGTTGGAGGAAATGAACTTGGTGCCGGAAACAATGTTGCGAGACGATTTGTCCGACATTTCGCTGGATTCGGTTGGGGATTTCAGGTCATGTAAATGGAATGTGGAGGATTTCTTTCAAGATCAATGTGGTGGTTTCTGA

Protein Analysis

301

Amino Acids

34.2

Weight (kDa)

5.11

Isoelectric Point (pI)

60.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
AP2 PF00847 96 - 146 6.7e-14 AP2 domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 787
AccIII TCCGGA 1 cut(s) 96
AciI CCGC 5 cut(s) 307, 327, 349, 386, 591
AclI AACGTT 2 cut(s) 75, 374
AclWI GGATC 1 cut(s) 495
AcoI YGGCCR 2 cut(s) 237, 308
AcsI RAATTY 1 cut(s) 474
AcuI CTGAAG 1 cut(s) 753
AfaI GTAC 3 cut(s) 26, 300, 407
AfiI CCNNNNNNNGG 2 cut(s) 363, 385
AflIII ACRYGT 1 cut(s) 129
AgsI TTSAA 2 cut(s) 9, 884
AhdI GACNNNNNGTC 1 cut(s) 814
AjiI CACGTC 1 cut(s) 132
AjnI CCWGG 1 cut(s) 658
AluBI AGCT 3 cut(s) 55, 416, 737
AluI AGCT 3 cut(s) 55, 416, 737
Alw26I GTCTC 2 cut(s) 649, 801
AlwI GGATC 1 cut(s) 495
Aor13HI TCCGGA 1 cut(s) 96
AoxI GGCC 3 cut(s) 237, 308, 324
ApeKI GCWGC 3 cut(s) 304, 395, 416
ApoI RAATTY 1 cut(s) 474
AspS9I GGNCC 2 cut(s) 324, 346
AsuC2I CCSGG 2 cut(s) 293, 344
AsuHPI GGTGA 2 cut(s) 37, 100
AsuII TTCGAA 2 cut(s) 503, 539
AvaII GGWCC 1 cut(s) 346
BalI TGGCCA 1 cut(s) 239
BanI GGYRCC 1 cut(s) 787
BbvI GCAGC 3 cut(s) 316, 403, 407
BccI CCATC 1 cut(s) 707
BceAI ACGGC 3 cut(s) 295, 317, 399
BcgI CGANNNNNNTGC 2 cut(s) 398, 432
BciT130I CCWGG 1 cut(s) 660
BclI TGATCA 1 cut(s) 720
BcnI CCSGG 2 cut(s) 293, 344
BcoDI GTCTC 2 cut(s) 649, 801
BisI GCNGC 5 cut(s) 305, 308, 327, 396, 417
BlsI GCNGC 5 cut(s) 306, 309, 328, 397, 418
Bme1390I CCNGG 3 cut(s) 293, 344, 660
Bme18I GGWCC 1 cut(s) 346
BmeRI GACNNNNNGTC 1 cut(s) 814
BmgBI CACGTC 1 cut(s) 132
BmgT120I GGNCC 2 cut(s) 324, 346
BmiI GGNNCC 1 cut(s) 789
BmrFI CCNGG 3 cut(s) 293, 344, 660
BoxI GACNNNNGTC 1 cut(s) 661
Bpu14I TTCGAA 2 cut(s) 503, 539
BpuMI CCSGG 2 cut(s) 293, 344
BsaI GGTCTC 1 cut(s) 649
BsaJI CCNNGG 4 cut(s) 216, 292, 311, 659
BsaWI WCCGGW 2 cut(s) 96, 271
BsaXI ACNNNNNCTCC 2 cut(s) 383, 413
Bsc4I CCNNNNNNNGG 2 cut(s) 363, 385
Bse1I ACTGG 2 cut(s) 513, 549
BseAI TCCGGA 1 cut(s) 96
BseBI CCWGG 1 cut(s) 660
BseDI CCNNGG 4 cut(s) 216, 292, 311, 659
BseLI CCNNNNNNNGG 2 cut(s) 363, 385
BseMII CTCAG 1 cut(s) 646
BseNI ACTGG 2 cut(s) 513, 549
BseRI GAGGAG 4 cut(s) 224, 290, 404, 453
BseX3I CGGCCG 1 cut(s) 308
BseXI GCAGC 3 cut(s) 316, 403, 407
Bsh1285I CGRYCG 2 cut(s) 311, 558
BshFI GGCC 3 cut(s) 239, 310, 326
BshNI GGYRCC 1 cut(s) 787
BsiEI CGRYCG 2 cut(s) 311, 558
BsiSI CCGG 5 cut(s) 97, 272, 292, 344, 791
BsiWI CGTACG 1 cut(s) 298
BslFI GGGAC 4 cut(s) 68, 340, 447, 711
BslI CCNNNNNNNGG 2 cut(s) 363, 385
BsmAI GTCTC 2 cut(s) 649, 801
BsmBI CGTCTC 1 cut(s) 801
BsmFI GGGAC 4 cut(s) 68, 340, 447, 711
BsmI GAATGC 2 cut(s) 547, 609
BsnI GGCC 3 cut(s) 239, 310, 326
Bso31I GGTCTC 1 cut(s) 649
Bsp119I TTCGAA 2 cut(s) 503, 539
Bsp13I TCCGGA 1 cut(s) 96
Bsp143I GATC 5 cut(s) 487, 519, 555, 720, 886
BspACI CCGC 5 cut(s) 307, 327, 349, 386, 591
BspANI GGCC 3 cut(s) 239, 310, 326
BspCNI CTCAG 1 cut(s) 645
BspEI TCCGGA 1 cut(s) 96
BspLI GGNNCC 1 cut(s) 789
BspPI GGATC 1 cut(s) 495
BspT104I TTCGAA 2 cut(s) 503, 539
BspT107I GGYRCC 1 cut(s) 787
BspTNI GGTCTC 1 cut(s) 649
BsrI ACTGG 2 cut(s) 513, 549
BssECI CCNNGG 4 cut(s) 216, 292, 311, 659
BssMI GATC 5 cut(s) 487, 519, 555, 720, 886
Bst2UI CCWGG 1 cut(s) 660
Bst6I CTCTTC 4 cut(s) 29, 173, 201, 275
BstBI TTCGAA 2 cut(s) 503, 539
BstDEI CTNAG 2 cut(s) 87, 632
BstDSI CCRYGG 1 cut(s) 311
BstKTI GATC 5 cut(s) 490, 522, 558, 723, 889
BstMAI GTCTC 2 cut(s) 649, 801
BstMBI GATC 5 cut(s) 487, 519, 555, 720, 886
BstMCI CGRYCG 2 cut(s) 311, 558
BstMWI GCNNNNNNNGC 2 cut(s) 61, 392
BstNI CCWGG 1 cut(s) 660
BstPAI GACNNNNGTC 1 cut(s) 661
BstSCI CCNGG 3 cut(s) 291, 342, 658
BstV1I GCAGC 3 cut(s) 316, 403, 407
BstZI CGGCCG 1 cut(s) 308
BsuRI GGCC 3 cut(s) 239, 310, 326
BtgI CCRYGG 1 cut(s) 311
BtgZI GCGATG 1 cut(s) 442
BtrI CACGTC 1 cut(s) 132
BtsIMutI CAGTG 2 cut(s) 640, 729
Cfr13I GGNCC 2 cut(s) 324, 346
CpoI CGGWCCG 1 cut(s) 346
CseI GACGC 2 cut(s) 128, 534
Csp6I GTAC 3 cut(s) 25, 299, 406
CspI CGGWCCG 1 cut(s) 346
CviAII CATG 1 cut(s) 855
CviQI GTAC 3 cut(s) 25, 299, 406
DdeI CTNAG 2 cut(s) 87, 632
DpnI GATC 5 cut(s) 489, 521, 557, 722, 888
DpnII GATC 5 cut(s) 487, 519, 555, 720, 886
DriI GACNNNNNGTC 1 cut(s) 814
EaeI YGGCCR 2 cut(s) 237, 308
EagI CGGCCG 1 cut(s) 308
Eam1104I CTCTTC 4 cut(s) 29, 173, 201, 275
Eam1105I GACNNNNNGTC 1 cut(s) 814
EarI CTCTTC 4 cut(s) 29, 173, 201, 275
EciI GGCGGA 1 cut(s) 401
EclXI CGGCCG 1 cut(s) 308
Eco31I GGTCTC 1 cut(s) 649
Eco47I GGWCC 1 cut(s) 346
Eco52I CGGCCG 1 cut(s) 308
Eco57I CTGAAG 1 cut(s) 753
EcoRII CCWGG 1 cut(s) 658
Esp3I CGTCTC 1 cut(s) 801
FaeI CATG 1 cut(s) 858
FaiI YATR 6 cut(s) 438, 564, 585, 702, 740, 856
FaqI GGGAC 4 cut(s) 68, 340, 447, 711
FatI CATG 1 cut(s) 854
FauI CCCGC 1 cut(s) 584
FbaI TGATCA 1 cut(s) 720
Fnu4HI GCNGC 5 cut(s) 305, 308, 327, 396, 417
Fsp4HI GCNGC 5 cut(s) 305, 308, 327, 396, 417
GluI GCNGC 5 cut(s) 305, 308, 327, 396, 417
HaeIII GGCC 3 cut(s) 239, 310, 326
HapII CCGG 5 cut(s) 97, 272, 292, 344, 791
HgaI GACGC 2 cut(s) 128, 534
Hin1II CATG 1 cut(s) 858
HindIII AAGCTT 1 cut(s) 53
HpaII CCGG 5 cut(s) 97, 272, 292, 344, 791
HphI GGTGA 2 cut(s) 37, 100
Hpy166II GTNNAC 2 cut(s) 27, 406
Hpy188I TCNGA 7 cut(s) 217, 249, 371, 487, 606, 820, 905
Hpy188III TCNNGA 6 cut(s) 70, 97, 338, 448, 491, 884
Hpy8I GTNNAC 2 cut(s) 27, 406
Hpy99I CGWCG 2 cut(s) 116, 143
HpyAV CCTTC 2 cut(s) 477, 661
HpyCH4IV ACGT 3 cut(s) 75, 131, 374
HpyCH4V TGCA 1 cut(s) 80
HpyF10VI GCNNNNNNNGC 2 cut(s) 61, 392
HpyF3I CTNAG 2 cut(s) 87, 632
HpySE526I ACGT 3 cut(s) 75, 131, 374
Hsp92II CATG 1 cut(s) 858
Kpn2I TCCGGA 1 cut(s) 96
Ksp22I TGATCA 1 cut(s) 720
Kzo9I GATC 5 cut(s) 487, 519, 555, 720, 886
LmnI GCTCC 3 cut(s) 466, 620, 670
Lsp1109I GCAGC 3 cut(s) 316, 403, 407
MaeII ACGT 3 cut(s) 75, 131, 374
MaeIII GTNAC 5 cut(s) 106, 338, 641, 704, 751
MalI GATC 5 cut(s) 489, 521, 557, 722, 888
MboI GATC 5 cut(s) 487, 519, 555, 720, 886
MboII GAAGA 9 cut(s) 46, 155, 158, 190, 218, 292, 489, 492, 736
MlsI TGGCCA 1 cut(s) 239
MluCI AATT 1 cut(s) 474
MluNI TGGCCA 1 cut(s) 239
MlyI GAGTC 3 cut(s) 34, 221, 518
MmeI TCCRAC 2 cut(s) 750, 843
Mox20I TGGCCA 1 cut(s) 239
MroI TCCGGA 1 cut(s) 96
MscI TGGCCA 1 cut(s) 239
MseI TTAA 1 cut(s) 693
MslI CAYNNNNRTG 1 cut(s) 859
Msp20I TGGCCA 1 cut(s) 239
MspA1I CMGCKG 1 cut(s) 307
MspI CCGG 5 cut(s) 97, 272, 292, 344, 791
MspR9I CCNGG 3 cut(s) 293, 344, 660
Mva1269I GAATGC 2 cut(s) 547, 609
MvaI CCWGG 1 cut(s) 660
MwoI GCNNNNNNNGC 2 cut(s) 61, 392
NciI CCSGG 2 cut(s) 293, 344
NdeII GATC 5 cut(s) 487, 519, 555, 720, 886
NlaIII CATG 1 cut(s) 858
NlaIV GGNNCC 1 cut(s) 789
NmeAIII GCCGAG 1 cut(s) 355
NmuCI GTSAC 3 cut(s) 106, 338, 641
NspV TTCGAA 2 cut(s) 503, 539
PcsI WCGNNNNNNNCGW 1 cut(s) 816
PctI GAATGC 2 cut(s) 547, 609
PfeI GAWTC 7 cut(s) 5, 201, 244, 334, 494, 763, 833
Pfl23II CGTACG 1 cut(s) 298
PflFI GACNNNGTC 1 cut(s) 344
PkrI GCNGC 5 cut(s) 306, 309, 328, 397, 418
Ple19I CGATCG 1 cut(s) 558
PleI GAGTC 3 cut(s) 34, 220, 517
PpsI GAGTC 3 cut(s) 34, 220, 517
PshAI GACNNNNGTC 1 cut(s) 661
Psp1406I AACGTT 2 cut(s) 75, 374
Psp6I CCWGG 1 cut(s) 658
PspGI CCWGG 1 cut(s) 658
PspLI CGTACG 1 cut(s) 298
PspN4I GGNNCC 1 cut(s) 789
PspPI GGNCC 2 cut(s) 324, 346
PsyI GACNNNGTC 1 cut(s) 344
PvuI CGATCG 1 cut(s) 558
RsaI GTAC 3 cut(s) 26, 300, 407
RsaNI GTAC 3 cut(s) 25, 299, 406
RseI CAYNNNNRTG 1 cut(s) 859
Rsr2I CGGWCCG 1 cut(s) 346
RsrII CGGWCCG 1 cut(s) 346
SaqAI TTAA 1 cut(s) 693
SatI GCNGC 5 cut(s) 305, 308, 327, 396, 417
Sau3AI GATC 5 cut(s) 487, 519, 555, 720, 886
Sau96I GGNCC 2 cut(s) 324, 346
SchI GAGTC 3 cut(s) 34, 221, 518
ScrFI CCNGG 3 cut(s) 293, 344, 660
SetI ASST 9 cut(s) 57, 78, 134, 377, 418, 626, 661, 739, 854
SfuI TTCGAA 2 cut(s) 503, 539
SinI GGWCC 1 cut(s) 346
SmiMI CAYNNNNRTG 1 cut(s) 859
Sse9I AATT 1 cut(s) 474
SsiI CCGC 5 cut(s) 307, 327, 349, 386, 591
StyD4I CCNGG 3 cut(s) 291, 342, 658
TaiI ACGT 3 cut(s) 78, 134, 377
TaqI TCGA 7 cut(s) 204, 503, 518, 539, 554, 558, 665
TasI AATT 1 cut(s) 474
TatI WGTACW 1 cut(s) 24
TauI GCSGC 2 cut(s) 310, 329
TfiI GAWTC 7 cut(s) 5, 201, 244, 334, 494, 763, 833
Tru1I TTAA 1 cut(s) 693
Tru9I TTAA 1 cut(s) 693
TscAI CASTG 2 cut(s) 640, 736
TseFI GTSAC 3 cut(s) 106, 338, 641
TseI GCWGC 3 cut(s) 304, 395, 416
Tsp45I GTSAC 3 cut(s) 106, 338, 641
TspDTI ATGAA 2 cut(s) 693, 794
TspGWI ACGGA 2 cut(s) 44, 94
TspRI CASTG 2 cut(s) 640, 736
Tth111I GACNNNGTC 1 cut(s) 344
VpaK11BI GGWCC 1 cut(s) 346
XapI RAATTY 1 cut(s) 474
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.