Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Reverse (-)

19111961 .. 19114227

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT2G46550.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGGCAGCAGCTGAAGCAAGAGCAGTGTGGCAAAGAACAGTTAATCGTTGCTTTGTCCAAGAAGACGCTAAAAGAGCTCCCAAGTTAACTTATTGCCAATCATCTTCATCCTCAACTGCTTCTTCAACTAAGCAAGTGGAAGTTTCTGGTTCTTCTCCTCGAGTTTCTGTTGAACCACGGACTCAATCATCTTGTGCAGGTTTCATGCCTCTTCCTCGAAACCCGAATTTCCCTGATCTGTTACCCCACAACACCAGACTGTGGAGTCATCCTCATCATCAGTTTCAGGTGAATAAGAAGCAGCCATTGGAGGATGAGGTTAACAATCAAGGTGTATCTGAGAAGAAGTCTGAATTGGGAGCTGGAGAGAAACAAGGAAAGTCTTTTAATTCCGAAAGCTTTCAAGAGTTTATAGAGTTGATGGAGACAAGGGAGAGTTATGGTTCAACTGGGTATGATGAGTCCTCTGAGAAAAAGTTAAGTGAGCTCTCTTTTGATCCTAGCTCGCCGTGGAATCTTCTCTCGAGTGAGAAAGCTGCACCGTGGTGGCGAACTACGGATAAAGACGAGTTAGCTTCCTTGGTTGCACAAAGATCTCTAGACTATGTTGAGAATTGTGATTTACCAACACCGCAGAAGATGAAACGATCTTATTATGGTAGTCCACGTGGTTTTGATTCTGATGGATTGAGAGACTACTCTGTCTCTGGCCAAACCATCAAGGGTACAAGCAAAGGAAGCAGCTGCAAGAACAGACCCGAGGCTTCATCTGAGTCTGATTTAAGCAAATCCGAGCTTCTAGAAGCACTGAGGCGTTCGCAAACGCGGGCTAGGGAAGCGGAGAATATGGCTAAAGAAGCTTATGCAGAGAAAGAGCACTTGGTGAAGATATTGTTGAAGCAAGCCGCAGAGCTTTTTGGGTATAAGCAATGGTTACAACTGCTTCAGCTAGAAGCACTTTACCTCCAAATCAAGAACAAGGAGATTGACAATAAGAACAACGACGATCCAGGGGTTTCCATCCCTTGTTGGAGCAATGGCAAAGCAAGAAAAGAGGGGAGAAAGAGAAGAAGCAAAAGGGGTAAACCGAATGGAGCAAAGTACGCGGTTGGTTTAGCATTGGGGATGAGTCTTGTTGGTGCTGGTTTGCTTCTTGGATGGACTGTTGGATGGATGCAGATGCTATCGTTCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

397

Amino Acids

44.41

Weight (kDa)

9.0

Isoelectric Point (pI)

58.32

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	264, 701
Acc36I	ACCTGC	1 cut(s)	188
AccB7I	CCANNNNNTGG	1 cut(s)	261
AccII	CGCG	2 cut(s)	826, 1106
AciI	CCGC	5 cut(s)	632, 826, 839, 906, 1106
AclWI	GGATC	2 cut(s)	491, 1001
AcoI	YGGCCR	1 cut(s)	709
AcsI	RAATTY	1 cut(s)	226
AcuI	CTGAAG	2 cut(s)	33, 929
AcvI	CACGTG	1 cut(s)	668
AdeI	CACNNNGTG	1 cut(s)	883
AfaI	GTAC	2 cut(s)	727, 1103
AfiI	CCNNNNNNNGG	1 cut(s)	261
AgsI	TTSAA	5 cut(s)	126, 173, 404, 447, 898
AjnI	CCWGG	1 cut(s)	1009
AjuI	GAANNNNNNNTTGG	6 cut(s)	290, 322, 338, 370, 863, 895
AleI	CACNNNNGTG	1 cut(s)	544
Alw21I	GWGCWC	3 cut(s)	79, 489, 879
Alw26I	GTCTC	3 cut(s)	419, 687, 709
AlwI	GGATC	2 cut(s)	491, 1001
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	3 cut(s)	159, 523, 758
AoxI	GGCC	1 cut(s)	709
ApeKI	GCWGC	6 cut(s)	5, 8, 301, 536, 741, 744
ApoI	RAATTY	1 cut(s)	226
Asp700I	GAANNNNTTC	1 cut(s)	399
AsuHPI	GGTGA	2 cut(s)	301, 895
AvaI	CYCGRG	3 cut(s)	159, 523, 758
BalI	TGGCCA	1 cut(s)	711
BanII	GRGCYC	2 cut(s)	79, 489
BbrPI	CACGTG	1 cut(s)	668
BbsI	GAAGAC	1 cut(s)	69
Bbv12I	GWGCWC	3 cut(s)	79, 489, 879
BbvI	GCAGC	6 cut(s)	17, 20, 313, 523, 731, 753
BccI	CCATC	6 cut(s)	415, 677, 725, 1028, 1152, 1164
BceAI	ACGGC	1 cut(s)	493
BciT130I	CCWGG	1 cut(s)	1011
BcoDI	GTCTC	3 cut(s)	419, 687, 709
BfaI	CTAG	6 cut(s)	501, 599, 800, 831, 950, 1192
BfuAI	ACCTGC	1 cut(s)	188
BglII	AGATCT	1 cut(s)	593
BisI	GCNGC	7 cut(s)	6, 9, 302, 537, 742, 745, 906
BlsI	GCNGC	7 cut(s)	7, 10, 303, 538, 743, 746, 907
Bme1390I	CCNGG	1 cut(s)	1011
BmeT110I	CYCGRG	3 cut(s)	159, 523, 758
BmrFI	CCNGG	1 cut(s)	1011
BmrI	ACTGGG	1 cut(s)	459
BmsI	GCATC	2 cut(s)	1164, 1170
BmuI	ACTGGG	1 cut(s)	459
BpiI	GAAGAC	1 cut(s)	69
BplI	GAGNNNNNCTC	2 cut(s)	256, 288
BpmI	CTGGAG	1 cut(s)	384
BsaAI	YACGTR	1 cut(s)	668
BsaJI	CCNNGG	6 cut(s)	176, 509, 542, 579, 759, 1010
BsaXI	ACNNNNNCTCC	2 cut(s)	948, 978
Bsc4I	CCNNNNNNNGG	1 cut(s)	261
Bse1I	ACTGG	1 cut(s)	454
Bse3DI	GCAATG	2 cut(s)	935, 1042
BseBI	CCWGG	1 cut(s)	1011
BseDI	CCNNGG	6 cut(s)	176, 509, 542, 579, 759, 1010
BseGI	GGATG	8 cut(s)	107, 268, 319, 1020, 1131, 1163, 1175, 1179
BseLI	CCNNNNNNNGG	1 cut(s)	261
BseMI	GCAATG	2 cut(s)	935, 1042
BseMII	CTCAG	4 cut(s)	330, 459, 762, 800
BseNI	ACTGG	1 cut(s)	454
BseRI	GAGGAG	1 cut(s)	147
BseXI	GCAGC	6 cut(s)	17, 20, 313, 523, 731, 753
BsgI	GTGCAG	2 cut(s)	216, 522
Bsh1236I	CGCG	2 cut(s)	826, 1106
BshFI	GGCC	1 cut(s)	711
BsiHKAI	GWGCWC	3 cut(s)	79, 489, 879
BsiHKCI	CYCGRG	3 cut(s)	159, 523, 758
BslI	CCNNNNNNNGG	1 cut(s)	261
BsmAI	GTCTC	3 cut(s)	419, 687, 709
BsnI	GGCC	1 cut(s)	711
BsoBI	CYCGRG	3 cut(s)	159, 523, 758
Bsp1286I	GDGCHC	3 cut(s)	79, 489, 879
Bsp143I	GATC	5 cut(s)	235, 496, 593, 647, 1006
BspACI	CCGC	5 cut(s)	632, 826, 839, 906, 1106
BspANI	GGCC	1 cut(s)	711
BspCNI	CTCAG	4 cut(s)	331, 460, 763, 801
BspFNI	CGCG	2 cut(s)	826, 1106
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	2 cut(s)	491, 1001
BsrDI	GCAATG	2 cut(s)	935, 1042
BsrI	ACTGG	1 cut(s)	454
BssECI	CCNNGG	6 cut(s)	176, 509, 542, 579, 759, 1010
BssMI	GATC	5 cut(s)	235, 496, 593, 647, 1006
BssT1I	CCWWGG	1 cut(s)	579
Bst2UI	CCWGG	1 cut(s)	1011
Bst4CI	ACNGT	4 cut(s)	40, 261, 543, 1165
Bst6I	CTCTTC	1 cut(s)	216
BstBAI	YACGTR	1 cut(s)	668
BstC8I	GCNNGC	3 cut(s)	506, 828, 903
BstDEI	CTNAG	5 cut(s)	129, 339, 468, 771, 809
BstDSI	CCRYGG	3 cut(s)	176, 509, 542
BstF5I	GGATG	8 cut(s)	107, 268, 319, 1020, 1131, 1163, 1175, 1179
BstFNI	CGCG	2 cut(s)	826, 1106
BstKTI	GATC	5 cut(s)	238, 499, 596, 650, 1009
BstMAI	GTCTC	3 cut(s)	419, 687, 709
BstMBI	GATC	5 cut(s)	235, 496, 593, 647, 1006
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 74, 738, 836, 857, 1103
BstNI	CCWGG	1 cut(s)	1011
BstSCI	CCNGG	1 cut(s)	1009
BstUI	CGCG	2 cut(s)	826, 1106
BstV1I	GCAGC	6 cut(s)	17, 20, 313, 523, 731, 753
BstV2I	GAAGAC	1 cut(s)	69
BstX2I	RGATCY	1 cut(s)	593
BstYI	RGATCY	1 cut(s)	593
BsuRI	GGCC	1 cut(s)	711
BtgI	CCRYGG	3 cut(s)	176, 509, 542
BtsCI	GGATG	8 cut(s)	107, 268, 319, 1020, 1131, 1163, 1175, 1179
BtsI	GCAGTG	1 cut(s)	30
BtsIMutI	CAGTG	2 cut(s)	30, 806
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	3 cut(s)	506, 828, 903
CaiI	CAGNNNCTG	1 cut(s)	11
CseI	GACGC	1 cut(s)	74
Csp6I	GTAC	2 cut(s)	726, 1102
CviAII	CATG	1 cut(s)	205
CviQI	GTAC	2 cut(s)	726, 1102
DdeI	CTNAG	5 cut(s)	129, 339, 468, 771, 809
DpnI	GATC	5 cut(s)	237, 498, 595, 649, 1008
DpnII	GATC	5 cut(s)	235, 496, 593, 647, 1006
DraIII	CACNNNGTG	1 cut(s)	883
DrdI	GACNNNNNNGTC	2 cut(s)	264, 701
DseDI	GACNNNNNNGTC	2 cut(s)	264, 701
EaeI	YGGCCR	1 cut(s)	709
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Ecl136II	GAGCTC	2 cut(s)	77, 487
Eco130I	CCWWGG	1 cut(s)	579
Eco24I	GRGCYC	2 cut(s)	79, 489
Eco53kI	GAGCTC	2 cut(s)	77, 487
Eco57I	CTGAAG	2 cut(s)	33, 929
Eco72I	CACGTG	1 cut(s)	668
Eco88I	CYCGRG	3 cut(s)	159, 523, 758
EcoICRI	GAGCTC	2 cut(s)	77, 487
EcoRII	CCWGG	1 cut(s)	1009
EcoT14I	CCWWGG	1 cut(s)	579
EcoT38I	GRGCYC	2 cut(s)	79, 489
ErhI	CCWWGG	1 cut(s)	579
FaeI	CATG	1 cut(s)	208
FaiI	YATR	9 cut(s)	206, 413, 441, 456, 606, 657, 848, 864, 924
FatI	CATG	1 cut(s)	204
FauI	CCCGC	1 cut(s)	819
Fnu4HI	GCNGC	7 cut(s)	6, 9, 302, 537, 742, 745, 906
FokI	GGATG	8 cut(s)	94, 255, 326, 1007, 1138, 1170, 1182, 1186
FriOI	GRGCYC	2 cut(s)	79, 489
Fsp4HI	GCNGC	7 cut(s)	6, 9, 302, 537, 742, 745, 906
FspBI	CTAG	6 cut(s)	501, 599, 800, 831, 950, 1192
GluI	GCNGC	7 cut(s)	6, 9, 302, 537, 742, 745, 906
GsuI	CTGGAG	1 cut(s)	384
HaeIII	GGCC	1 cut(s)	711
HgaI	GACGC	1 cut(s)	74
Hin1II	CATG	1 cut(s)	208
HincII	GTYRAC	2 cut(s)	87, 322
HindII	GTYRAC	2 cut(s)	87, 322
HindIII	AAGCTT	2 cut(s)	397, 858
HinfI	GANTC	7 cut(s)	181, 265, 461, 514, 677, 773, 1129
HpaI	GTTAAC	2 cut(s)	87, 322
HphI	GGTGA	2 cut(s)	301, 895
Hpy166II	GTNNAC	4 cut(s)	87, 322, 665, 1085
Hpy188I	TCNGA	8 cut(s)	340, 352, 394, 469, 682, 772, 778, 793
Hpy188III	TCNNGA	5 cut(s)	404, 523, 599, 800, 973
Hpy8I	GTNNAC	4 cut(s)	87, 322, 665, 1085
Hpy99I	CGWCG	1 cut(s)	1007
HpyCH4III	ACNGT	4 cut(s)	40, 261, 543, 1165
HpyCH4IV	ACGT	1 cut(s)	667
HpyCH4V	TGCA	6 cut(s)	197, 539, 587, 747, 866, 1177
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 74, 738, 836, 857, 1103
HpyF3I	CTNAG	5 cut(s)	129, 339, 468, 771, 809
HpySE526I	ACGT	1 cut(s)	667
Hsp92II	CATG	1 cut(s)	208
KspAI	GTTAAC	2 cut(s)	87, 322
Kzo9I	GATC	5 cut(s)	235, 496, 593, 647, 1006
LmnI	GCTCC	4 cut(s)	82, 359, 1032, 1094
Lsp1109I	GCAGC	6 cut(s)	17, 20, 313, 523, 731, 753
LweI	GCATC	2 cut(s)	1164, 1170
MaeI	CTAG	6 cut(s)	501, 599, 800, 831, 950, 1192
MaeII	ACGT	1 cut(s)	667
MaeIII	GTNAC	2 cut(s)	240, 933
MalI	GATC	5 cut(s)	237, 498, 595, 649, 1008
MboI	GATC	5 cut(s)	235, 496, 593, 647, 1006
MflI	RGATCY	1 cut(s)	593
MhlI	GDGCHC	3 cut(s)	79, 489, 879
MlsI	TGGCCA	1 cut(s)	711
MluCI	AATT	4 cut(s)	226, 353, 388, 613
MluNI	TGGCCA	1 cut(s)	711
MlyI	GAGTC	5 cut(s)	175, 274, 470, 782, 1138
MmeI	TCCRAC	2 cut(s)	1010, 1147
Mox20I	TGGCCA	1 cut(s)	711
MroXI	GAANNNNTTC	1 cut(s)	399
MscI	TGGCCA	1 cut(s)	711
MseI	TTAA	6 cut(s)	42, 86, 321, 387, 479, 782
MslI	CAYNNNNRTG	1 cut(s)	544
Msp20I	TGGCCA	1 cut(s)	711
MspA1I	CMGCKG	2 cut(s)	11, 744
MspR9I	CCNGG	1 cut(s)	1011
MvaI	CCWGG	1 cut(s)	1011
MvnI	CGCG	2 cut(s)	826, 1106
MwoI	GCNNNNNNNGC	6 cut(s)	14, 74, 738, 836, 857, 1103
NdeII	GATC	5 cut(s)	235, 496, 593, 647, 1006
NlaIII	CATG	1 cut(s)	208
OliI	CACNNNNGTG	1 cut(s)	544
PaeR7I	CTCGAG	2 cut(s)	159, 523
PdmI	GAANNNNTTC	1 cut(s)	399
PfeI	GAWTC	2 cut(s)	514, 677
PflMI	CCANNNNNTGG	1 cut(s)	261
PkrI	GCNGC	7 cut(s)	7, 10, 303, 538, 743, 746, 907
PleI	GAGTC	5 cut(s)	175, 273, 469, 781, 1137
PmaCI	CACGTG	1 cut(s)	668
PmlI	CACGTG	1 cut(s)	668
PpsI	GAGTC	5 cut(s)	175, 273, 469, 781, 1137
Ppu21I	YACGTR	1 cut(s)	668
Psp124BI	GAGCTC	2 cut(s)	79, 489
Psp6I	CCWGG	1 cut(s)	1009
PspCI	CACGTG	1 cut(s)	668
PspGI	CCWGG	1 cut(s)	1009
PspXI	VCTCGAGB	1 cut(s)	159
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	593
PvuII	CAGCTG	2 cut(s)	11, 744
RsaI	GTAC	2 cut(s)	727, 1103
RsaNI	GTAC	2 cut(s)	726, 1102
RseI	CAYNNNNRTG	1 cut(s)	544
SacI	GAGCTC	2 cut(s)	79, 489
SaqAI	TTAA	6 cut(s)	42, 86, 321, 387, 479, 782
SatI	GCNGC	7 cut(s)	6, 9, 302, 537, 742, 745, 906
Sau3AI	GATC	5 cut(s)	235, 496, 593, 647, 1006
SchI	GAGTC	5 cut(s)	175, 274, 470, 782, 1138
ScrFI	CCNGG	1 cut(s)	1011
SduI	GDGCHC	3 cut(s)	79, 489, 879
SfaNI	GCATC	2 cut(s)	1164, 1170
Sfr274I	CTCGAG	2 cut(s)	159, 523
SlaI	CTCGAG	2 cut(s)	159, 523
SmiMI	CAYNNNNRTG	1 cut(s)	544
SmlI	CTYRAG	2 cut(s)	159, 523
SmoI	CTYRAG	2 cut(s)	159, 523
Sse9I	AATT	4 cut(s)	226, 353, 388, 613
SsiI	CCGC	5 cut(s)	632, 826, 839, 906, 1106
SspMI	CTAG	6 cut(s)	501, 599, 800, 831, 950, 1192
SstI	GAGCTC	2 cut(s)	79, 489
StyD4I	CCNGG	1 cut(s)	1009
StyI	CCWWGG	1 cut(s)	579
TaaI	ACNGT	4 cut(s)	40, 261, 543, 1165
TaiI	ACGT	1 cut(s)	670
TaqI	TCGA	3 cut(s)	160, 217, 524
TasI	AATT	4 cut(s)	226, 353, 388, 613
TauI	GCSGC	1 cut(s)	908
TfiI	GAWTC	2 cut(s)	514, 677
Tru1I	TTAA	6 cut(s)	42, 86, 321, 387, 479, 782
Tru9I	TTAA	6 cut(s)	42, 86, 321, 387, 479, 782
TscAI	CASTG	2 cut(s)	30, 813
TseI	GCWGC	6 cut(s)	5, 8, 301, 536, 741, 744
TspDTI	ATGAA	4 cut(s)	96, 193, 656, 756
TspGWI	ACGGA	2 cut(s)	193, 572
TspRI	CASTG	2 cut(s)	30, 813
Van91I	CCANNNNNTGG	1 cut(s)	261
XapI	RAATTY	1 cut(s)	226
XbaI	TCTAGA	2 cut(s)	598, 799
XhoI	CTCGAG	2 cut(s)	159, 523
XmnI	GAANNNNTTC	1 cut(s)	399
XspI	CTAG	6 cut(s)	501, 599, 800, 831, 950, 1192

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.