Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8234723.1

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 520

Gene Structure 520 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8234723.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 466 bp

ggatctcttagatctgcaacaacttactgagggtgaccctaccaaagctcagctaattgaagcactgtgccattctcaaacacgtgcaagggaagctgagaaggcagcaaagcaagcttgtgctgagaaggagcatatttttaagctcttctttaaacaagcttctcagctctttgcctataggcagtggttccaattgctgcagctggaaaccctttatgtccagattaagaacaaggaccaggtaggctccactgttctcccagtggtccttccttggatgtcaagcagacgtcgaaaatcgcacaggagctggcgtaaggttcccaaaggtaaacgaagcaggcgggtctaccccggatatgacatttccaagtacgccgttgctcttgcactggggttcggtctcgttggggctgggttgctcctgggatggactgtgggttggatgttaccttctttctag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

154

Amino Acids

17.64

Weight (kDa)

10.01

Isoelectric Point (pI)

66.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	296
AccI	GTMKAC	1 cut(s)	352
AciI	CCGC	1 cut(s)	347
AclWI	GGATC	1 cut(s)	10
AcvI	CACGTG	1 cut(s)	84
AcyI	GRCGYC	1 cut(s)	293
AfaI	GTAC	1 cut(s)	378
AflIII	ACRYGT	1 cut(s)	81
AgsI	TTSAA	1 cut(s)	60
AjnI	CCWGG	2 cut(s)	241, 427
AluBI	AGCT	9 cut(s)	48, 53, 96, 117, 146, 162, 170, 206, 313
AluI	AGCT	9 cut(s)	48, 53, 96, 117, 146, 162, 170, 206, 313
Alw26I	GTCTC	1 cut(s)	411
AlwI	GGATC	1 cut(s)	10
AlwNI	CAGNNNCTG	1 cut(s)	313
ApeKI	GCWGC	3 cut(s)	105, 200, 203
AspS9I	GGNCC	2 cut(s)	239, 269
AsuC2I	CCSGG	1 cut(s)	358
AsuHPI	GGTGA	1 cut(s)	45
AvaII	GGWCC	2 cut(s)	239, 269
BbrPI	CACGTG	1 cut(s)	84
BbvI	GCAGC	3 cut(s)	117, 187, 215
BccI	CCATC	1 cut(s)	427
BceAI	ACGGC	1 cut(s)	366
BciT130I	CCWGG	2 cut(s)	243, 429
BcnI	CCSGG	1 cut(s)	358
BcoDI	GTCTC	1 cut(s)	411
BfaI	CTAG	1 cut(s)	464
BfmI	CTRYAG	2 cut(s)	179, 201
BglII	AGATCT	1 cut(s)	11
BisI	GCNGC	3 cut(s)	106, 201, 204
BlpI	GCTNAGC	1 cut(s)	49
BlsI	GCNGC	3 cut(s)	107, 202, 205
Bme1390I	CCNGG	3 cut(s)	243, 358, 429
Bme18I	GGWCC	2 cut(s)	239, 269
BmgT120I	GGNCC	2 cut(s)	239, 269
BmiI	GGNNCC	3 cut(s)	192, 251, 325
BmrFI	CCNGG	3 cut(s)	243, 358, 429
BmrI	ACTGGG	2 cut(s)	258, 405
BmuI	ACTGGG	2 cut(s)	258, 405
Bpu1102I	GCTNAGC	1 cut(s)	49
BpuMI	CCSGG	1 cut(s)	358
BsaAI	YACGTR	1 cut(s)	84
BsaHI	GRCGYC	1 cut(s)	293
BsaI	GGTCTC	1 cut(s)	411
BsaJI	CCNNGG	3 cut(s)	276, 356, 428
BsaXI	ACNNNNNCTCC	2 cut(s)	302, 332
Bse1I	ACTGG	2 cut(s)	264, 400
BseBI	CCWGG	2 cut(s)	243, 429
BseDI	CCNNGG	3 cut(s)	276, 356, 428
BseGI	GGATG	3 cut(s)	286, 438, 454
BseMII	CTCAG	5 cut(s)	19, 63, 88, 115, 180
BseNI	ACTGG	2 cut(s)	264, 400
BseXI	GCAGC	3 cut(s)	117, 187, 215
BseYI	CCCAGC	1 cut(s)	417
BsiSI	CCGG	1 cut(s)	358
BsmAI	GTCTC	1 cut(s)	411
Bso31I	GGTCTC	1 cut(s)	411
Bsp143I	GATC	2 cut(s)	2, 11
Bsp1720I	GCTNAGC	1 cut(s)	49
BspACI	CCGC	1 cut(s)	347
BspCNI	CTCAG	5 cut(s)	20, 62, 89, 116, 179
BspLI	GGNNCC	3 cut(s)	192, 251, 325
BspMAI	CTGCAG	1 cut(s)	205
BspPI	GGATC	1 cut(s)	10
BspQI	GCTCTTC	1 cut(s)	153
BspTNI	GGTCTC	1 cut(s)	411
BsrI	ACTGG	2 cut(s)	264, 400
BssECI	CCNNGG	3 cut(s)	276, 356, 428
BssMI	GATC	2 cut(s)	2, 11
BssNI	GRCGYC	1 cut(s)	293
BssT1I	CCWWGG	1 cut(s)	276
Bst2UI	CCWGG	2 cut(s)	243, 429
Bst4CI	ACNGT	3 cut(s)	67, 257, 440
Bst6I	CTCTTC	1 cut(s)	153
BstACI	GRCGYC	1 cut(s)	293
BstBAI	YACGTR	1 cut(s)	84
BstC8I	GCNNGC	3 cut(s)	115, 315, 345
BstDEI	CTNAG	6 cut(s)	8, 28, 49, 97, 124, 166
BstEII	GGTNACC	1 cut(s)	33
BstF5I	GGATG	3 cut(s)	286, 438, 454
BstKTI	GATC	2 cut(s)	5, 14
BstMAI	GTCTC	1 cut(s)	411
BstMBI	GATC	2 cut(s)	2, 11
BstMWI	GCNNNNNNNGC	3 cut(s)	93, 102, 114
BstNI	CCWGG	2 cut(s)	243, 429
BstPI	GGTNACC	1 cut(s)	33
BstSCI	CCNGG	3 cut(s)	241, 356, 427
BstSFI	CTRYAG	2 cut(s)	179, 201
BstV1I	GCAGC	3 cut(s)	117, 187, 215
BstX2I	RGATCY	2 cut(s)	2, 11
BstYI	RGATCY	2 cut(s)	2, 11
BtsCI	GGATG	3 cut(s)	286, 438, 454
BtsI	GCAGTG	1 cut(s)	192
BtsIMutI	CAGTG	5 cut(s)	63, 192, 253, 271, 393
Cac8I	GCNNGC	3 cut(s)	115, 315, 345
CaiI	CAGNNNCTG	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	239, 269
CsiI	ACCWGGT	1 cut(s)	241
Csp6I	GTAC	1 cut(s)	377
CviQI	GTAC	1 cut(s)	377
DdeI	CTNAG	6 cut(s)	8, 28, 49, 97, 124, 166
DpnI	GATC	2 cut(s)	4, 13
DpnII	GATC	2 cut(s)	2, 11
DraI	TTTAAA	1 cut(s)	155
Eam1104I	CTCTTC	1 cut(s)	153
EarI	CTCTTC	1 cut(s)	153
Eco130I	CCWWGG	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	411
Eco47I	GGWCC	2 cut(s)	239, 269
Eco72I	CACGTG	1 cut(s)	84
Eco91I	GGTNACC	1 cut(s)	33
EcoO65I	GGTNACC	1 cut(s)	33
EcoRII	CCWGG	2 cut(s)	241, 427
EcoT14I	CCWWGG	1 cut(s)	276
ErhI	CCWWGG	1 cut(s)	276
FaiI	YATR	4 cut(s)	136, 181, 220, 364
FalI	AAGNNNNNCTT	2 cut(s)	135, 167
FauI	CCCGC	1 cut(s)	340
FblI	GTMKAC	1 cut(s)	352
Fnu4HI	GCNGC	3 cut(s)	106, 201, 204
FokI	GGATG	3 cut(s)	293, 445, 461
Fsp4HI	GCNGC	3 cut(s)	106, 201, 204
FspBI	CTAG	1 cut(s)	464
GluI	GCNGC	3 cut(s)	106, 201, 204
GsaI	CCCAGC	1 cut(s)	421
HapII	CCGG	1 cut(s)	358
Hin1I	GRCGYC	1 cut(s)	293
HindIII	AAGCTT	2 cut(s)	115, 160
HpaII	CCGG	1 cut(s)	358
HphI	GGTGA	1 cut(s)	45
Hpy166II	GTNNAC	2 cut(s)	336, 353
Hpy188III	TCNNGA	1 cut(s)	224
Hpy8I	GTNNAC	2 cut(s)	336, 353
Hpy99I	CGWCG	1 cut(s)	298
HpyAV	CCTTC	4 cut(s)	95, 122, 282, 466
HpyCH4III	ACNGT	3 cut(s)	67, 257, 440
HpyCH4IV	ACGT	2 cut(s)	83, 293
HpyCH4V	TGCA	4 cut(s)	17, 87, 203, 393
HpyF10VI	GCNNNNNNNGC	3 cut(s)	93, 102, 114
HpyF3I	CTNAG	6 cut(s)	8, 28, 49, 97, 124, 166
HpySE526I	ACGT	2 cut(s)	83, 293
Hsp92I	GRCGYC	1 cut(s)	293
Kzo9I	GATC	2 cut(s)	2, 11
LguI	GCTCTTC	1 cut(s)	153
LmnI	GCTCC	4 cut(s)	131, 255, 310, 430
Lsp1109I	GCAGC	3 cut(s)	117, 187, 215
MabI	ACCWGGT	1 cut(s)	241
MaeI	CTAG	1 cut(s)	464
MaeII	ACGT	2 cut(s)	83, 293
MaeIII	GTNAC	2 cut(s)	33, 451
MalI	GATC	2 cut(s)	4, 13
MboI	GATC	2 cut(s)	2, 11
MboII	GAAGA	1 cut(s)	140
MfeI	CAATTG	1 cut(s)	195
MflI	RGATCY	2 cut(s)	2, 11
MluCI	AATT	2 cut(s)	55, 195
MmeI	TCCRAC	1 cut(s)	426
MnlI	CCTC	1 cut(s)	23
MseI	TTAA	3 cut(s)	142, 154, 229
MspA1I	CMGCKG	1 cut(s)	206
MspI	CCGG	1 cut(s)	358
MspR9I	CCNGG	3 cut(s)	243, 358, 429
MunI	CAATTG	1 cut(s)	195
MvaI	CCWGG	2 cut(s)	243, 429
MwoI	GCNNNNNNNGC	3 cut(s)	93, 102, 114
NciI	CCSGG	1 cut(s)	358
NdeII	GATC	2 cut(s)	2, 11
NlaIV	GGNNCC	3 cut(s)	192, 251, 325
NmuCI	GTSAC	1 cut(s)	33
PciSI	GCTCTTC	1 cut(s)	153
PkrI	GCNGC	3 cut(s)	107, 202, 205
PmaCI	CACGTG	1 cut(s)	84
PmlI	CACGTG	1 cut(s)	84
Ppu21I	YACGTR	1 cut(s)	84
Psp6I	CCWGG	2 cut(s)	241, 427
PspCI	CACGTG	1 cut(s)	84
PspEI	GGTNACC	1 cut(s)	33
PspFI	CCCAGC	1 cut(s)	417
PspGI	CCWGG	2 cut(s)	241, 427
PspN4I	GGNNCC	3 cut(s)	192, 251, 325
PspPI	GGNCC	2 cut(s)	239, 269
PstI	CTGCAG	1 cut(s)	205
PstNI	CAGNNNCTG	1 cut(s)	313
PsuI	RGATCY	2 cut(s)	2, 11
PvuII	CAGCTG	1 cut(s)	206
RsaI	GTAC	1 cut(s)	378
RsaNI	GTAC	1 cut(s)	377
SapI	GCTCTTC	1 cut(s)	153
SaqAI	TTAA	3 cut(s)	142, 154, 229
SatI	GCNGC	3 cut(s)	106, 201, 204
Sau3AI	GATC	2 cut(s)	2, 11
Sau96I	GGNCC	2 cut(s)	239, 269
ScrFI	CCNGG	3 cut(s)	243, 358, 429
SexAI	ACCWGGT	1 cut(s)	241
SfcI	CTRYAG	2 cut(s)	179, 201
SinI	GGWCC	2 cut(s)	239, 269
Sse9I	AATT	2 cut(s)	55, 195
SsiI	CCGC	1 cut(s)	347
SspMI	CTAG	1 cut(s)	464
StyD4I	CCNGG	3 cut(s)	241, 356, 427
StyI	CCWWGG	1 cut(s)	276
TaaI	ACNGT	3 cut(s)	67, 257, 440
TaiI	ACGT	2 cut(s)	86, 296
TaqI	TCGA	1 cut(s)	296
TaqII	GACCGA	1 cut(s)	393
TasI	AATT	2 cut(s)	55, 195
Tru1I	TTAA	3 cut(s)	142, 154, 229
Tru9I	TTAA	3 cut(s)	142, 154, 229
TscAI	CASTG	5 cut(s)	70, 192, 260, 271, 400
TseFI	GTSAC	1 cut(s)	33
TseI	GCWGC	3 cut(s)	105, 200, 203
Tsp45I	GTSAC	1 cut(s)	33
TspRI	CASTG	5 cut(s)	70, 192, 260, 271, 400
VpaK11BI	GGWCC	2 cut(s)	239, 269
XmiI	GTMKAC	1 cut(s)	352
XspI	CTAG	1 cut(s)	464
ZraI	GACGTC	1 cut(s)	294

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.