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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT2G46550 AT2G46550 AT2G46550 |
| fragaria_vesca | FvH4_7g16870 FvH4_7g31981 |
| malus_domestica | MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1 |
| prunus_persica | Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 |
| pyrus_communis | pycom01g23210 pycom07g15050 |
| rosa_chinensis | RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491 |
| rosa_laevigata | RLG00000026228 RLG00000027833 |
| rosa_multiflora | Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040 |
| rosa_roxburghii | Rroxscaffold_4G00278620 |
| rosa_rugosa | Rorug01G0275000 Rorug01G0275100 Rorug01G0428900 |
| rosa_samantha | Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700 |
| rosa_wichuraiana | Rw1G025620 Rw1G039470 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 164 |
| Acc36I | ACCTGC | 1 cut(s) | 485 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 45, 457 |
| AccBSI | CCGCTC | 1 cut(s) | 247 |
| AccII | CGCG | 3 cut(s) | 565, 805, 1073 |
| AccIII | TCCGGA | 1 cut(s) | 137 |
| AciI | CCGC | 6 cut(s) | 245, 563, 565, 828, 1073, 1097 |
| AclWI | GGATC | 3 cut(s) | 317, 602, 633 |
| AcoI | YGGCCR | 1 cut(s) | 566 |
| AcsI | RAATTY | 1 cut(s) | 133 |
| AdeI | CACNNNGTG | 1 cut(s) | 42 |
| AfaI | GTAC | 2 cut(s) | 199, 365 |
| AfiI | CCNNNNNNNGG | 8 cut(s) | 45, 68, 69, 286, 457, 983, 1012, 1023 |
| AgsI | TTSAA | 7 cut(s) | 52, 125, 133, 539, 687, 734, 877 |
| AjnI | CCWGG | 1 cut(s) | 54 |
| Alw21I | GWGCWC | 2 cut(s) | 413, 858 |
| AlwI | GGATC | 3 cut(s) | 317, 602, 633 |
| Ama87I | CYCGRG | 3 cut(s) | 248, 349, 929 |
| Aor13HI | TCCGGA | 1 cut(s) | 137 |
| AoxI | GGCC | 6 cut(s) | 71, 566, 592, 882, 1003, 1014 |
| ApaI | GGGCCC | 1 cut(s) | 596 |
| ApeKI | GCWGC | 5 cut(s) | 241, 922, 925, 946, 1029 |
| ApoI | RAATTY | 1 cut(s) | 133 |
| AspLEI | GCGC | 3 cut(s) | 303, 489, 1011 |
| AspS9I | GGNCC | 7 cut(s) | 71, 346, 592, 593, 972, 1003, 1014 |
| AsuC2I | CCSGG | 3 cut(s) | 350, 351, 1093 |
| AsuII | TTCGAA | 1 cut(s) | 398 |
| AvaI | CYCGRG | 3 cut(s) | 248, 349, 929 |
| AvaII | GGWCC | 2 cut(s) | 346, 972 |
| AxyI | CCTNAGG | 1 cut(s) | 75 |
| BaeGI | GKGCMC | 1 cut(s) | 596 |
| BanII | GRGCYC | 2 cut(s) | 413, 596 |
| BbsI | GAAGAC | 3 cut(s) | 426, 504, 759 |
| Bbv12I | GWGCWC | 2 cut(s) | 413, 858 |
| BbvCI | CCTCAGC | 1 cut(s) | 598 |
| BbvI | GCAGC | 5 cut(s) | 253, 909, 937, 958, 1041 |
| BccI | CCATC | 2 cut(s) | 625, 1107 |
| BciT130I | CCWGG | 1 cut(s) | 56 |
| BclI | TGATCA | 1 cut(s) | 373 |
| BcnI | CCSGG | 3 cut(s) | 350, 351, 1093 |
| BfaI | CTAG | 2 cut(s) | 26, 717 |
| BfmI | CTRYAG | 3 cut(s) | 492, 923, 944 |
| BfoI | RGCGCY | 1 cut(s) | 490 |
| BfuAI | ACCTGC | 1 cut(s) | 485 |
| BisI | GCNGC | 8 cut(s) | 242, 245, 566, 828, 923, 926, 947, 1030 |
| BlsI | GCNGC | 8 cut(s) | 243, 246, 567, 829, 924, 927, 948, 1031 |
| BmcAI | AGTACT | 1 cut(s) | 199 |
| Bme1390I | CCNGG | 4 cut(s) | 56, 350, 351, 1093 |
| Bme18I | GGWCC | 2 cut(s) | 346, 972 |
| BmeT110I | CYCGRG | 3 cut(s) | 248, 349, 929 |
| BmgT120I | GGNCC | 7 cut(s) | 71, 346, 592, 593, 972, 1003, 1014 |
| BmiI | GGNNCC | 7 cut(s) | 60, 348, 420, 463, 594, 595, 974 |
| BmrFI | CCNGG | 4 cut(s) | 56, 350, 351, 1093 |
| BmrI | ACTGGG | 1 cut(s) | 445 |
| BmsI | GCATC | 1 cut(s) | 589 |
| BmuI | ACTGGG | 1 cut(s) | 445 |
| BpiI | GAAGAC | 3 cut(s) | 426, 504, 759 |
| Bpu10I | CCTNAGC | 1 cut(s) | 598 |
| Bpu14I | TTCGAA | 1 cut(s) | 398 |
| BpuEI | CTTGAG | 1 cut(s) | 427 |
| BpuMI | CCSGG | 3 cut(s) | 350, 351, 1093 |
| BsaBI | GATNNNNATC | 1 cut(s) | 375 |
| BsaJI | CCNNGG | 7 cut(s) | 349, 479, 516, 563, 968, 1092, 1108 |
| BsaWI | WCCGGW | 1 cut(s) | 137 |
| Bsc4I | CCNNNNNNNGG | 8 cut(s) | 45, 68, 69, 286, 457, 983, 1012, 1023 |
| Bse1I | ACTGG | 2 cut(s) | 438, 451 |
| Bse21I | CCTNAGG | 1 cut(s) | 75 |
| Bse8I | GATNNNNATC | 1 cut(s) | 375 |
| BseAI | TCCGGA | 1 cut(s) | 137 |
| BseBI | CCWGG | 1 cut(s) | 56 |
| BseDI | CCNNGG | 7 cut(s) | 349, 479, 516, 563, 968, 1092, 1108 |
| BseGI | GGATG | 2 cut(s) | 730, 1118 |
| BseJI | GATNNNNATC | 1 cut(s) | 375 |
| BseLI | CCNNNNNNNGG | 8 cut(s) | 45, 68, 69, 286, 457, 983, 1012, 1023 |
| BseMII | CTCAG | 4 cut(s) | 89, 381, 539, 612 |
| BseNI | ACTGG | 2 cut(s) | 438, 451 |
| BseRI | GAGGAG | 2 cut(s) | 95, 1097 |
| BseSI | GKGCMC | 1 cut(s) | 596 |
| BseXI | GCAGC | 5 cut(s) | 253, 909, 937, 958, 1041 |
| Bsh1236I | CGCG | 3 cut(s) | 565, 805, 1073 |
| BshFI | GGCC | 6 cut(s) | 73, 568, 594, 884, 1005, 1016 |
| BsiHKAI | GWGCWC | 2 cut(s) | 413, 858 |
| BsiHKCI | CYCGRG | 3 cut(s) | 248, 349, 929 |
| BsiSI | CCGG | 4 cut(s) | 138, 350, 1017, 1092 |
| BslFI | GGGAC | 1 cut(s) | 958 |
| BslI | CCNNNNNNNGG | 8 cut(s) | 45, 68, 69, 286, 457, 983, 1012, 1023 |
| BsmFI | GGGAC | 1 cut(s) | 958 |
| BsmI | GAATGC | 2 cut(s) | 297, 1067 |
| BsnI | GGCC | 6 cut(s) | 73, 568, 594, 884, 1005, 1016 |
| BsoBI | CYCGRG | 3 cut(s) | 248, 349, 929 |
| Bsp119I | TTCGAA | 1 cut(s) | 398 |
| Bsp120I | GGGCCC | 1 cut(s) | 592 |
| Bsp1286I | GDGCHC | 3 cut(s) | 413, 596, 858 |
| Bsp13I | TCCGGA | 1 cut(s) | 137 |
| Bsp143I | GATC | 5 cut(s) | 322, 373, 556, 607, 625 |
| Bsp19I | CCATGG | 2 cut(s) | 479, 968 |
| BspACI | CCGC | 6 cut(s) | 245, 563, 565, 828, 1073, 1097 |
| BspANI | GGCC | 6 cut(s) | 73, 568, 594, 884, 1005, 1016 |
| BspCNI | CTCAG | 4 cut(s) | 88, 380, 538, 611 |
| BspEI | TCCGGA | 1 cut(s) | 137 |
| BspFNI | CGCG | 3 cut(s) | 565, 805, 1073 |
| BspHI | TCATGA | 1 cut(s) | 381 |
| BspLI | GGNNCC | 7 cut(s) | 60, 348, 420, 463, 594, 595, 974 |
| BspMAI | CTGCAG | 3 cut(s) | 496, 927, 948 |
| BspMI | ACCTGC | 1 cut(s) | 485 |
| BspPI | GGATC | 3 cut(s) | 317, 602, 633 |
| BspT104I | TTCGAA | 1 cut(s) | 398 |
| BsrBI | CCGCTC | 1 cut(s) | 247 |
| BsrI | ACTGG | 2 cut(s) | 438, 451 |
| BssECI | CCNNGG | 7 cut(s) | 349, 479, 516, 563, 968, 1092, 1108 |
| BssMI | GATC | 5 cut(s) | 322, 373, 556, 607, 625 |
| BssT1I | CCWWGG | 3 cut(s) | 479, 516, 968 |
| Bst2UI | CCWGG | 1 cut(s) | 56 |
| Bst4CI | ACNGT | 2 cut(s) | 68, 1141 |
| BstAPI | GCANNNNNTGC | 2 cut(s) | 913, 922 |
| BstBI | TTCGAA | 1 cut(s) | 398 |
| BstC8I | GCNNGC | 7 cut(s) | 676, 807, 837, 882, 944, 989, 1007 |
| BstDEI | CTNAG | 5 cut(s) | 75, 336, 367, 525, 598 |
| BstDSI | CCRYGG | 3 cut(s) | 479, 563, 968 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 981 |
| BstF5I | GGATG | 2 cut(s) | 730, 1118 |
| BstFNI | CGCG | 3 cut(s) | 565, 805, 1073 |
| BstH2I | RGCGCY | 1 cut(s) | 490 |
| BstHHI | GCGC | 3 cut(s) | 303, 489, 1011 |
| BstKTI | GATC | 5 cut(s) | 325, 376, 559, 610, 628 |
| BstMBI | GATC | 5 cut(s) | 322, 373, 556, 607, 625 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 815, 824, 836, 913, 922, 1038 |
| BstNI | CCWGG | 1 cut(s) | 56 |
| BstSCI | CCNGG | 4 cut(s) | 54, 348, 349, 1091 |
| BstSFI | CTRYAG | 3 cut(s) | 492, 923, 944 |
| BstSLI | GKGCMC | 1 cut(s) | 596 |
| BstUI | CGCG | 3 cut(s) | 565, 805, 1073 |
| BstV1I | GCAGC | 5 cut(s) | 253, 909, 937, 958, 1041 |
| BstV2I | GAAGAC | 3 cut(s) | 426, 504, 759 |
| Bsu36I | CCTNAGG | 1 cut(s) | 75 |
| BsuRI | GGCC | 6 cut(s) | 73, 568, 594, 884, 1005, 1016 |
| BtgI | CCRYGG | 3 cut(s) | 479, 563, 968 |
| BtsCI | GGATG | 2 cut(s) | 730, 1118 |
| BtsI | GCAGTG | 1 cut(s) | 914 |
| BtsIMutI | CAGTG | 3 cut(s) | 185, 458, 914 |
| BveI | ACCTGC | 1 cut(s) | 485 |
| Cac8I | GCNNGC | 7 cut(s) | 676, 807, 837, 882, 944, 989, 1007 |
| CciI | TCATGA | 1 cut(s) | 381 |
| CfoI | GCGC | 3 cut(s) | 303, 489, 1011 |
| Cfr13I | GGNCC | 7 cut(s) | 71, 346, 592, 593, 972, 1003, 1014 |
| Cfr42I | CCGCGG | 1 cut(s) | 566 |
| Cfr9I | CCCGGG | 1 cut(s) | 349 |
| Csp6I | GTAC | 2 cut(s) | 198, 364 |
| CviAII | CATG | 7 cut(s) | 296, 382, 480, 669, 701, 969, 994 |
| CviQI | GTAC | 2 cut(s) | 198, 364 |
| DdeI | CTNAG | 5 cut(s) | 75, 336, 367, 525, 598 |
| DpnI | GATC | 5 cut(s) | 324, 375, 558, 609, 627 |
| DpnII | GATC | 5 cut(s) | 322, 373, 556, 607, 625 |
| DraIII | CACNNNGTG | 1 cut(s) | 42 |
| EaeI | YGGCCR | 1 cut(s) | 566 |
| Ecl136II | GAGCTC | 1 cut(s) | 411 |
| Eco130I | CCWWGG | 3 cut(s) | 479, 516, 968 |
| Eco147I | AGGCCT | 1 cut(s) | 884 |
| Eco24I | GRGCYC | 2 cut(s) | 413, 596 |
| Eco47I | GGWCC | 2 cut(s) | 346, 972 |
| Eco53kI | GAGCTC | 1 cut(s) | 411 |
| Eco81I | CCTNAGG | 1 cut(s) | 75 |
| Eco88I | CYCGRG | 3 cut(s) | 248, 349, 929 |
| EcoICRI | GAGCTC | 1 cut(s) | 411 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 981 |
| EcoO109I | RGGNCCY | 3 cut(s) | 346, 592, 593 |
| EcoRI | GAATTC | 1 cut(s) | 133 |
| EcoRII | CCWGG | 1 cut(s) | 54 |
| EcoT14I | CCWWGG | 3 cut(s) | 479, 516, 968 |
| EcoT22I | ATGCAT | 1 cut(s) | 297 |
| EcoT38I | GRGCYC | 2 cut(s) | 413, 596 |
| ErhI | CCWWGG | 3 cut(s) | 479, 516, 968 |
| FaeI | CATG | 7 cut(s) | 299, 385, 483, 672, 704, 972, 997 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 105, 137 |
| FaqI | GGGAC | 1 cut(s) | 958 |
| FatI | CATG | 7 cut(s) | 295, 381, 479, 668, 700, 968, 993 |
| FauI | CCCGC | 2 cut(s) | 570, 1090 |
| FbaI | TGATCA | 1 cut(s) | 373 |
| Fnu4HI | GCNGC | 8 cut(s) | 242, 245, 566, 828, 923, 926, 947, 1030 |
| FokI | GGATG | 2 cut(s) | 737, 1125 |
| FriOI | GRGCYC | 2 cut(s) | 413, 596 |
| Fsp4HI | GCNGC | 8 cut(s) | 242, 245, 566, 828, 923, 926, 947, 1030 |
| FspBI | CTAG | 2 cut(s) | 26, 717 |
| GlaI | GCGC | 3 cut(s) | 302, 488, 1010 |
| GluI | GCNGC | 8 cut(s) | 242, 245, 566, 828, 923, 926, 947, 1030 |
| HaeII | RGCGCY | 1 cut(s) | 490 |
| HaeIII | GGCC | 6 cut(s) | 73, 568, 594, 884, 1005, 1016 |
| HapII | CCGG | 4 cut(s) | 138, 350, 1017, 1092 |
| HhaI | GCGC | 3 cut(s) | 303, 489, 1011 |
| Hin1II | CATG | 7 cut(s) | 299, 385, 483, 672, 704, 972, 997 |
| Hin6I | GCGC | 3 cut(s) | 301, 487, 1009 |
| HinP1I | GCGC | 3 cut(s) | 301, 487, 1009 |
| HindIII | AAGCTT | 1 cut(s) | 783 |
| HinfI | GANTC | 3 cut(s) | 392, 446, 704 |
| HpaII | CCGG | 4 cut(s) | 138, 350, 1017, 1092 |
| Hpy166II | GTNNAC | 1 cut(s) | 87 |
| Hpy188I | TCNGA | 4 cut(s) | 370, 528, 630, 1112 |
| Hpy188III | TCNNGA | 8 cut(s) | 20, 77, 110, 138, 382, 500, 547, 931 |
| Hpy8I | GTNNAC | 1 cut(s) | 87 |
| HpyAV | CCTTC | 4 cut(s) | 583, 714, 844, 994 |
| HpyCH4III | ACNGT | 2 cut(s) | 68, 1141 |
| HpyCH4V | TGCA | 7 cut(s) | 183, 295, 494, 916, 925, 946, 1067 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 815, 824, 836, 913, 922, 1038 |
| HpyF3I | CTNAG | 5 cut(s) | 75, 336, 367, 525, 598 |
| Hsp92II | CATG | 7 cut(s) | 299, 385, 483, 672, 704, 972, 997 |
| HspAI | GCGC | 3 cut(s) | 301, 487, 1009 |
| Kpn2I | TCCGGA | 1 cut(s) | 137 |
| Ksp22I | TGATCA | 1 cut(s) | 373 |
| KspI | CCGCGG | 1 cut(s) | 566 |
| Kzo9I | GATC | 5 cut(s) | 322, 373, 556, 607, 625 |
| LmnI | GCTCC | 3 cut(s) | 238, 853, 1110 |
| Lsp1109I | GCAGC | 5 cut(s) | 253, 909, 937, 958, 1041 |
| LweI | GCATC | 1 cut(s) | 589 |
| MaeI | CTAG | 2 cut(s) | 26, 717 |
| MaeIII | GTNAC | 5 cut(s) | 8, 259, 275, 531, 791 |
| MalI | GATC | 5 cut(s) | 324, 375, 558, 609, 627 |
| MbiI | CCGCTC | 1 cut(s) | 247 |
| MboI | GATC | 5 cut(s) | 322, 373, 556, 607, 625 |
| MboII | GAAGA | 5 cut(s) | 387, 426, 504, 764, 1009 |
| MfeI | CAATTG | 1 cut(s) | 917 |
| MhlI | GDGCHC | 3 cut(s) | 413, 596, 858 |
| MluCI | AATT | 8 cut(s) | 133, 226, 312, 386, 550, 613, 917, 1047 |
| MlyI | GAGTC | 1 cut(s) | 713 |
| MnlI | CCTC | 9 cut(s) | 73, 84, 244, 607, 721, 804, 895, 977, 1118 |
| Mph1103I | ATGCAT | 1 cut(s) | 297 |
| MroI | TCCGGA | 1 cut(s) | 137 |
| MseI | TTAA | 3 cut(s) | 576, 1050, 1144 |
| MspA1I | CMGCKG | 1 cut(s) | 565 |
| MspI | CCGG | 4 cut(s) | 138, 350, 1017, 1092 |
| MspR9I | CCNGG | 4 cut(s) | 56, 350, 351, 1093 |
| MunI | CAATTG | 1 cut(s) | 917 |
| Mva1269I | GAATGC | 2 cut(s) | 297, 1067 |
| MvaI | CCWGG | 1 cut(s) | 56 |
| MvnI | CGCG | 3 cut(s) | 565, 805, 1073 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 815, 824, 836, 913, 922, 1038 |
| NciI | CCSGG | 3 cut(s) | 350, 351, 1093 |
| NcoI | CCATGG | 2 cut(s) | 479, 968 |
| NdeII | GATC | 5 cut(s) | 322, 373, 556, 607, 625 |
| NlaIII | CATG | 7 cut(s) | 299, 385, 483, 672, 704, 972, 997 |
| NlaIV | GGNNCC | 7 cut(s) | 60, 348, 420, 463, 594, 595, 974 |
| NmeAIII | GCCGAG | 1 cut(s) | 796 |
| NmuCI | GTSAC | 4 cut(s) | 259, 275, 531, 791 |
| NsiI | ATGCAT | 1 cut(s) | 297 |
| NspV | TTCGAA | 1 cut(s) | 398 |
| PaeR7I | CTCGAG | 2 cut(s) | 248, 929 |
| PagI | TCATGA | 1 cut(s) | 381 |
| PceI | AGGCCT | 1 cut(s) | 884 |
| PctI | GAATGC | 2 cut(s) | 297, 1067 |
| PfeI | GAWTC | 2 cut(s) | 392, 446 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 45, 457 |
| PkrI | GCNGC | 8 cut(s) | 243, 246, 567, 829, 924, 927, 948, 1031 |
| PleI | GAGTC | 1 cut(s) | 712 |
| PpsI | GAGTC | 1 cut(s) | 712 |
| PpuMI | RGGWCCY | 1 cut(s) | 346 |
| PsiI | TTATAA | 1 cut(s) | 164 |
| Psp124BI | GAGCTC | 1 cut(s) | 413 |
| Psp5II | RGGWCCY | 1 cut(s) | 346 |
| Psp6I | CCWGG | 1 cut(s) | 54 |
| PspGI | CCWGG | 1 cut(s) | 54 |
| PspN4I | GGNNCC | 7 cut(s) | 60, 348, 420, 463, 594, 595, 974 |
| PspOMI | GGGCCC | 1 cut(s) | 592 |
| PspPI | GGNCC | 7 cut(s) | 71, 346, 592, 593, 972, 1003, 1014 |
| PspPPI | RGGWCCY | 1 cut(s) | 346 |
| PspXI | VCTCGAGB | 1 cut(s) | 248 |
| PstI | CTGCAG | 3 cut(s) | 496, 927, 948 |
| RsaI | GTAC | 2 cut(s) | 199, 365 |
| RsaNI | GTAC | 2 cut(s) | 198, 364 |
| SacI | GAGCTC | 1 cut(s) | 413 |
| SacII | CCGCGG | 1 cut(s) | 566 |
| SaqAI | TTAA | 3 cut(s) | 576, 1050, 1144 |
| SatI | GCNGC | 8 cut(s) | 242, 245, 566, 828, 923, 926, 947, 1030 |
| Sau3AI | GATC | 5 cut(s) | 322, 373, 556, 607, 625 |
| Sau96I | GGNCC | 7 cut(s) | 71, 346, 592, 593, 972, 1003, 1014 |
| ScaI | AGTACT | 1 cut(s) | 199 |
| SchI | GAGTC | 1 cut(s) | 713 |
| ScrFI | CCNGG | 4 cut(s) | 56, 350, 351, 1093 |
| SduI | GDGCHC | 3 cut(s) | 413, 596, 858 |
| SfaNI | GCATC | 1 cut(s) | 589 |
| SfcI | CTRYAG | 3 cut(s) | 492, 923, 944 |
| Sfr274I | CTCGAG | 2 cut(s) | 248, 929 |
| Sfr303I | CCGCGG | 1 cut(s) | 566 |
| SfuI | TTCGAA | 1 cut(s) | 398 |
| SgrBI | CCGCGG | 1 cut(s) | 566 |
| SinI | GGWCC | 2 cut(s) | 346, 972 |
| SlaI | CTCGAG | 2 cut(s) | 248, 929 |
| SmaI | CCCGGG | 1 cut(s) | 351 |
| SmlI | CTYRAG | 3 cut(s) | 248, 406, 929 |
| SmoI | CTYRAG | 3 cut(s) | 248, 406, 929 |
| Sse9I | AATT | 8 cut(s) | 133, 226, 312, 386, 550, 613, 917, 1047 |
| SseBI | AGGCCT | 1 cut(s) | 884 |
| SsiI | CCGC | 6 cut(s) | 245, 563, 565, 828, 1073, 1097 |
| SspMI | CTAG | 2 cut(s) | 26, 717 |
| SstI | GAGCTC | 1 cut(s) | 413 |
| StuI | AGGCCT | 1 cut(s) | 884 |
| StyD4I | CCNGG | 4 cut(s) | 54, 348, 349, 1091 |
| StyI | CCWWGG | 3 cut(s) | 479, 516, 968 |
| TaaI | ACNGT | 2 cut(s) | 68, 1141 |
| TaqI | TCGA | 6 cut(s) | 249, 398, 546, 606, 930, 951 |
| TasI | AATT | 8 cut(s) | 133, 226, 312, 386, 550, 613, 917, 1047 |
| TatI | WGTACW | 1 cut(s) | 197 |
| TauI | GCSGC | 3 cut(s) | 247, 568, 830 |
| TfiI | GAWTC | 2 cut(s) | 392, 446 |
| Tru1I | TTAA | 3 cut(s) | 576, 1050, 1144 |
| Tru9I | TTAA | 3 cut(s) | 576, 1050, 1144 |
| TscAI | CASTG | 3 cut(s) | 185, 458, 914 |
| TseFI | GTSAC | 4 cut(s) | 259, 275, 531, 791 |
| TseI | GCWGC | 5 cut(s) | 241, 922, 925, 946, 1029 |
| Tsp45I | GTSAC | 4 cut(s) | 259, 275, 531, 791 |
| TspDTI | ATGAA | 4 cut(s) | 137, 398, 489, 1010 |
| TspMI | CCCGGG | 1 cut(s) | 349 |
| TspRI | CASTG | 3 cut(s) | 185, 458, 914 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 45, 457 |
| VpaK11BI | GGWCC | 2 cut(s) | 346, 972 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 981 |
| XapI | RAATTY | 1 cut(s) | 133 |
| XhoI | CTCGAG | 2 cut(s) | 248, 929 |
| XmaI | CCCGGG | 1 cut(s) | 349 |
| XspI | CTAG | 2 cut(s) | 26, 717 |
| ZrmI | AGTACT | 1 cut(s) | 199 |
| Zsp2I | ATGCAT | 1 cut(s) | 297 |