Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1C

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Reverse (-)

68303096 .. 68305818

Gene Structure 2723 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1CG423900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1356 bp

ATGGCAGCAGCCGAAGCACGGACTGGATGGCAGCATAGAGCGAATTGTTGTTTTGCCCAAGACAATGTGAGGAGTGCTCAAAGATTTGCGCGTCACCCGTCATCGTCTTCCTCAACAGAATCTGATAGTGCTCCTGAGAATGCTTCATATGGGATTGATCACCTTAGCCCAGATTGCATGCCTTATAACTCAAATCCGGAGCTAACACCCAGCACTAGGTGGTGGTTGAACCTGGAACCTAACTTTGGGCCTCAGAAGGAATTTATCTATGATCAGCAAAAGAGCCTGGACGCTGAACTTGAAGTTTTGAATTCTGGATATATTAATAAAACTGCCATCATAAGTGATTATTATCAGTGCAAGGAGGTATTTAGTACTCAGAGTGATAGTGAGAAGGGTGTCAACAGTTTTGTGGAGAAACCATGCAAGGTTTCAGTCACTTCTCCAAGAAATGACCCGAGTAAGAGAATGCAAGAACTCAAGGCTGGAATTGGTGATGGTCCGCAGCTGCCTAAGAAAAGGGACACAGGGGAGTTTTGGTACTCCGATGATGATTTCATGAACTTGGATTCTTTCAGCAGCTTGGATTCTGAACAAAACAAAAAGCTGTCTCCCGATTTGGATTCCCAATGGGTGGGAAGTGAGAAGTCTGAACCCTGGTGGCGCTCTGCTGGTAAAGATGAGTTGGCTTCCTTGGTTGCTCAGAAATCACTTGAAAATGTTGAGAATTGTGATCTTCCACGGCCCCAGATTAAGCATAGTAGGATAGGTCCTATCGCTTCTACAAAGTTTCCTGACCCTAATTTGTCCTTAGATCAGATGACTGAACTGGGATTGTCCAATGTCACCACTTATACTCAGGGAAGCTTTACTTCAGGTCACTCAATATATGATTCAGACAGTCCACTAAGCCACAACAATGATCATGCTGCAACCAACCAAGATGAGCCAGATGATGAACGAAGTAAAGCTCAGCTGCTGGAAGCTTTGTGTCATTCTCAAACACGAGCTAGGAAAGCTGAGAAAGCTGCACAGCAGGCCTATACAGAGAAGGAGCACATCATCAGTCTCTTTTTCAAACAGGCATCACAGCTGTTTGCCTACAAGCAGTGGCTCCATTTGCTGCAAATCGAGAACTTTTGCCTGCAGCTTAATAAAAAAGATGGCTTACCATGGTCCCCATACAAAGGCAGGCCCATGAAGAAGAAGGCTCACCGCAGGGCTGGAAAGAGGAGCGGCAGCAGGCCAAGGTATGAGATCAGCAAGGGTGCTGTTGCTTTTGCAGTAGGATTAGGTCTTGCCGGTGCAGGCTTGCTCCTCGGATGGACTATGGGGTGGTTGTTTCCAACTGCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

451

Amino Acids

50.52

Weight (kDa)

6.29

Isoelectric Point (pI)

49.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	186
AccB7I	CCANNNNNTGG	1 cut(s)	634
AccBSI	CCGCTC	1 cut(s)	1236
AccII	CGCG	1 cut(s)	91
AccIII	TCCGGA	1 cut(s)	196
AciI	CCGC	3 cut(s)	503, 1216, 1236
AcsI	RAATTY	2 cut(s)	260, 310
AcuI	CTGAAG	1 cut(s)	858
AdeI	CACNNNGTG	1 cut(s)	219
AfaI	GTAC	2 cut(s)	376, 542
AfiI	CCNNNNNNNGG	5 cut(s)	18, 216, 245, 634, 1187
AgsI	TTSAA	5 cut(s)	229, 302, 310, 716, 1078
AjnI	CCWGG	3 cut(s)	231, 285, 656
AjuI	GAANNNNNNNTTGG	2 cut(s)	228, 260
Alw21I	GWGCWC	3 cut(s)	79, 133, 1059
Alw26I	GTCTC	2 cut(s)	615, 1073
AlwNI	CAGNNNCTG	2 cut(s)	122, 979
Ama87I	CYCGRG	1 cut(s)	457
Aor13HI	TCCGGA	1 cut(s)	196
AoxI	GGCC	5 cut(s)	248, 743, 1038, 1193, 1244
ApoI	RAATTY	2 cut(s)	260, 310
AseI	ATTAAT	1 cut(s)	324
AspLEI	GCGC	2 cut(s)	91, 666
AspS9I	GGNCC	6 cut(s)	248, 500, 744, 770, 1176, 1194
AsuHPI	GGTGA	5 cut(s)	86, 152, 506, 838, 1205
AvaI	CYCGRG	1 cut(s)	457
AvaII	GGWCC	3 cut(s)	500, 770, 1176
BauI	CACGAG	1 cut(s)	1005
BbsI	GAAGAC	1 cut(s)	99
Bbv12I	GWGCWC	3 cut(s)	79, 133, 1059
BccI	CCATC	5 cut(s)	21, 344, 491, 1157, 1317
BceAI	ACGGC	1 cut(s)	758
BciT130I	CCWGG	3 cut(s)	233, 287, 658
BclI	TGATCA	3 cut(s)	157, 271, 922
BcoDI	GTCTC	2 cut(s)	615, 1073
BfaI	CTAG	2 cut(s)	216, 1011
BfmI	CTRYAG	1 cut(s)	1145
BfoI	RGCGCY	1 cut(s)	667
BlpI	GCTNAGC	1 cut(s)	972
BmcAI	AGTACT	1 cut(s)	376
Bme1390I	CCNGG	3 cut(s)	233, 287, 658
Bme18I	GGWCC	3 cut(s)	500, 770, 1176
BmeT110I	CYCGRG	1 cut(s)	457
BmgT120I	GGNCC	6 cut(s)	248, 500, 744, 770, 1176, 1194
BmiI	GGNNCC	4 cut(s)	237, 746, 1115, 1178
BmrFI	CCNGG	3 cut(s)	233, 287, 658
BmrI	ACTGGG	1 cut(s)	839
BmsI	GCATC	1 cut(s)	1094
BmuI	ACTGGG	1 cut(s)	839
BpiI	GAAGAC	1 cut(s)	99
BplI	GAGNNNNNCTC	2 cut(s)	61, 93
Bpu10I	CCTNAGC	1 cut(s)	164
Bpu1102I	GCTNAGC	1 cut(s)	972
BpuEI	CTTGAG	1 cut(s)	464
BsaBI	GATNNNNATC	1 cut(s)	351
BsaJI	CCNNGG	6 cut(s)	656, 693, 740, 1172, 1247, 1318
BsaWI	WCCGGW	1 cut(s)	196
BsaXI	ACNNNNNCTCC	2 cut(s)	524, 554
Bsc4I	CCNNNNNNNGG	5 cut(s)	18, 216, 245, 634, 1187
Bse118I	RCCGGY	1 cut(s)	1301
Bse1I	ACTGG	2 cut(s)	28, 834
Bse8I	GATNNNNATC	1 cut(s)	351
BseAI	TCCGGA	1 cut(s)	196
BseBI	CCWGG	3 cut(s)	233, 287, 658
BseDI	CCNNGG	6 cut(s)	656, 693, 740, 1172, 1247, 1318
BseGI	GGATG	2 cut(s)	32, 1328
BseJI	GATNNNNATC	1 cut(s)	351
BseLI	CCNNNNNNNGG	5 cut(s)	18, 216, 245, 634, 1187
BseMII	CTCAG	7 cut(s)	126, 266, 392, 716, 872, 986, 1011
BseNI	ACTGG	2 cut(s)	28, 834
BseRI	GAGGAG	3 cut(s)	85, 1246, 1307
BseYI	CCCAGC	1 cut(s)	209
BsgI	GTGCAG	2 cut(s)	1014, 1326
Bsh1236I	CGCG	1 cut(s)	91
BshFI	GGCC	5 cut(s)	250, 745, 1040, 1195, 1246
BsiHKAI	GWGCWC	3 cut(s)	79, 133, 1059
BsiHKCI	CYCGRG	1 cut(s)	457
BsiSI	CCGG	2 cut(s)	197, 1302
BslFI	GGGAC	2 cut(s)	536, 1162
BslI	CCNNNNNNNGG	5 cut(s)	18, 216, 245, 634, 1187
BsmAI	GTCTC	2 cut(s)	615, 1073
BsmFI	GGGAC	2 cut(s)	536, 1162
BsmI	GAATGC	2 cut(s)	145, 474
BsnI	GGCC	5 cut(s)	250, 745, 1040, 1195, 1246
BsoBI	CYCGRG	1 cut(s)	457
Bsp1286I	GDGCHC	3 cut(s)	79, 133, 1059
Bsp13I	TCCGGA	1 cut(s)	196
Bsp143I	GATC	6 cut(s)	157, 271, 733, 814, 922, 1257
Bsp1720I	GCTNAGC	1 cut(s)	972
Bsp19I	CCATGG	1 cut(s)	1172
BspACI	CCGC	3 cut(s)	503, 1216, 1236
BspANI	GGCC	5 cut(s)	250, 745, 1040, 1195, 1246
BspCNI	CTCAG	7 cut(s)	127, 265, 391, 715, 871, 985, 1012
BspEI	TCCGGA	1 cut(s)	196
BspFNI	CGCG	1 cut(s)	91
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	4 cut(s)	237, 746, 1115, 1178
BspMAI	CTGCAG	1 cut(s)	1149
BsrBI	CCGCTC	1 cut(s)	1236
BsrFI	RCCGGY	1 cut(s)	1301
BsrI	ACTGG	2 cut(s)	28, 834
BssAI	RCCGGY	1 cut(s)	1301
BssECI	CCNNGG	6 cut(s)	656, 693, 740, 1172, 1247, 1318
BssMI	GATC	6 cut(s)	157, 271, 733, 814, 922, 1257
BssSI	CACGAG	1 cut(s)	1005
BssT1I	CCWWGG	3 cut(s)	693, 1172, 1247
Bst2BI	CACGAG	1 cut(s)	1005
Bst2UI	CCWGG	3 cut(s)	233, 287, 658
Bst4CI	ACNGT	2 cut(s)	407, 902
BstC8I	GCNNGC	7 cut(s)	179, 1038, 1145, 1193, 1244, 1309, 1313
BstDSI	CCRYGG	2 cut(s)	740, 1172
BstF5I	GGATG	2 cut(s)	32, 1328
BstFNI	CGCG	1 cut(s)	91
BstH2I	RGCGCY	1 cut(s)	667
BstHHI	GCGC	2 cut(s)	91, 666
BstKTI	GATC	6 cut(s)	160, 274, 736, 817, 925, 1260
BstMAI	GTCTC	2 cut(s)	615, 1073
BstMBI	GATC	6 cut(s)	157, 271, 733, 814, 922, 1257
BstMWI	GCNNNNNNNGC	6 cut(s)	14, 174, 1016, 1025, 1037, 1120
BstNI	CCWGG	3 cut(s)	233, 287, 658
BstNSI	RCATGY	1 cut(s)	181
BstSCI	CCNGG	3 cut(s)	231, 285, 656
BstSFI	CTRYAG	1 cut(s)	1145
BstUI	CGCG	1 cut(s)	91
BstV2I	GAAGAC	1 cut(s)	99
BsuRI	GGCC	5 cut(s)	250, 745, 1040, 1195, 1246
BtgI	CCRYGG	2 cut(s)	740, 1172
BtsCI	GGATG	2 cut(s)	32, 1328
BtsI	GCAGTG	1 cut(s)	1115
BtsIMutI	CAGTG	2 cut(s)	362, 1115
Cac8I	GCNNGC	7 cut(s)	179, 1038, 1145, 1193, 1244, 1309, 1313
CaiI	CAGNNNCTG	2 cut(s)	122, 979
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	2 cut(s)	91, 666
Cfr10I	RCCGGY	1 cut(s)	1301
Cfr13I	GGNCC	6 cut(s)	248, 500, 744, 770, 1176, 1194
CseI	GACGC	2 cut(s)	80, 299
Csp6I	GTAC	2 cut(s)	375, 541
CviAII	CATG	6 cut(s)	178, 423, 559, 926, 1173, 1198
CviQI	GTAC	2 cut(s)	375, 541
DpnI	GATC	6 cut(s)	159, 273, 735, 816, 924, 1259
DpnII	GATC	6 cut(s)	157, 271, 733, 814, 922, 1257
DraIII	CACNNNGTG	1 cut(s)	219
Eco130I	CCWWGG	3 cut(s)	693, 1172, 1247
Eco147I	AGGCCT	1 cut(s)	1040
Eco47I	GGWCC	3 cut(s)	500, 770, 1176
Eco57I	CTGAAG	1 cut(s)	858
Eco88I	CYCGRG	1 cut(s)	457
EcoO109I	RGGNCCY	1 cut(s)	770
EcoRI	GAATTC	1 cut(s)	310
EcoRII	CCWGG	3 cut(s)	231, 285, 656
EcoT14I	CCWWGG	3 cut(s)	693, 1172, 1247
ErhI	CCWWGG	3 cut(s)	693, 1172, 1247
FaeI	CATG	6 cut(s)	181, 426, 562, 929, 1176, 1201
FalI	AAGNNNNNCTT	2 cut(s)	856, 888
FaqI	GGGAC	2 cut(s)	536, 1162
FatI	CATG	6 cut(s)	177, 422, 558, 925, 1172, 1197
FauNDI	CATATG	1 cut(s)	148
FbaI	TGATCA	3 cut(s)	157, 271, 922
FokI	GGATG	2 cut(s)	39, 1335
FspBI	CTAG	2 cut(s)	216, 1011
GlaI	GCGC	2 cut(s)	90, 665
GsaI	CCCAGC	1 cut(s)	213
HaeII	RGCGCY	1 cut(s)	667
HaeIII	GGCC	5 cut(s)	250, 745, 1040, 1195, 1246
HapII	CCGG	2 cut(s)	197, 1302
HgaI	GACGC	2 cut(s)	80, 299
HhaI	GCGC	2 cut(s)	91, 666
Hin1II	CATG	6 cut(s)	181, 426, 562, 929, 1176, 1201
Hin6I	GCGC	2 cut(s)	89, 664
HinP1I	GCGC	2 cut(s)	89, 664
HincII	GTYRAC	1 cut(s)	403
HindII	GTYRAC	1 cut(s)	403
HindIII	AAGCTT	2 cut(s)	865, 984
HinfI	GANTC	5 cut(s)	119, 569, 587, 623, 893
HpaII	CCGG	2 cut(s)	197, 1302
HphI	GGTGA	5 cut(s)	86, 152, 506, 838, 1205
Hpy166II	GTNNAC	2 cut(s)	403, 905
Hpy188III	TCNNGA	7 cut(s)	134, 197, 315, 559, 614, 794, 1132
Hpy8I	GTNNAC	2 cut(s)	403, 905
HpyAV	CCTTC	4 cut(s)	250, 388, 1045, 1201
HpyCH4III	ACNGT	2 cut(s)	407, 902
HpyF10VI	GCNNNNNNNGC	6 cut(s)	14, 174, 1016, 1025, 1037, 1120
Hsp92II	CATG	6 cut(s)	181, 426, 562, 929, 1176, 1201
HspAI	GCGC	2 cut(s)	89, 664
Kpn2I	TCCGGA	1 cut(s)	196
Ksp22I	TGATCA	3 cut(s)	157, 271, 922
Kzo9I	GATC	6 cut(s)	157, 271, 733, 814, 922, 1257
LmnI	GCTCC	6 cut(s)	136, 199, 1054, 1119, 1233, 1320
LweI	GCATC	1 cut(s)	1094
MaeI	CTAG	2 cut(s)	216, 1011
MaeIII	GTNAC	4 cut(s)	92, 436, 844, 878
MalI	GATC	6 cut(s)	159, 273, 735, 816, 924, 1259
MbiI	CCGCTC	1 cut(s)	1236
MboI	GATC	6 cut(s)	157, 271, 733, 814, 922, 1257
MboII	GAAGA	4 cut(s)	99, 728, 1213, 1216
MhlI	GDGCHC	3 cut(s)	79, 133, 1059
MluCI	AATT	6 cut(s)	43, 260, 310, 489, 727, 802
MnlI	CCTC	6 cut(s)	63, 121, 261, 358, 1224, 1328
MroI	TCCGGA	1 cut(s)	196
MseI	TTAA	3 cut(s)	324, 753, 1152
MslI	CAYNNNNRTG	1 cut(s)	918
MspA1I	CMGCKG	3 cut(s)	508, 976, 1093
MspI	CCGG	2 cut(s)	197, 1302
MspR9I	CCNGG	3 cut(s)	233, 287, 658
Mva1269I	GAATGC	2 cut(s)	145, 474
MvaI	CCWGG	3 cut(s)	233, 287, 658
MvnI	CGCG	1 cut(s)	91
MwoI	GCNNNNNNNGC	6 cut(s)	14, 174, 1016, 1025, 1037, 1120
NcoI	CCATGG	1 cut(s)	1172
NdeI	CATATG	1 cut(s)	148
NdeII	GATC	6 cut(s)	157, 271, 733, 814, 922, 1257
NlaIII	CATG	6 cut(s)	181, 426, 562, 929, 1176, 1201
NlaIV	GGNNCC	4 cut(s)	237, 746, 1115, 1178
NmuCI	GTSAC	4 cut(s)	92, 436, 844, 878
NspI	RCATGY	1 cut(s)	181
PaeI	GCATGC	1 cut(s)	181
PagI	TCATGA	1 cut(s)	558
PceI	AGGCCT	1 cut(s)	1040
PctI	GAATGC	2 cut(s)	145, 474
PfeI	GAWTC	5 cut(s)	119, 569, 587, 623, 893
PflMI	CCANNNNNTGG	1 cut(s)	634
PpuMI	RGGWCCY	1 cut(s)	770
PshBI	ATTAAT	1 cut(s)	324
PsiI	TTATAA	1 cut(s)	186
Psp5II	RGGWCCY	1 cut(s)	770
Psp6I	CCWGG	3 cut(s)	231, 285, 656
PspFI	CCCAGC	1 cut(s)	209
PspGI	CCWGG	3 cut(s)	231, 285, 656
PspN4I	GGNNCC	4 cut(s)	237, 746, 1115, 1178
PspPI	GGNCC	6 cut(s)	248, 500, 744, 770, 1176, 1194
PspPPI	RGGWCCY	1 cut(s)	770
PstI	CTGCAG	1 cut(s)	1149
PstNI	CAGNNNCTG	2 cut(s)	122, 979
PvuII	CAGCTG	3 cut(s)	508, 976, 1093
RsaI	GTAC	2 cut(s)	376, 542
RsaNI	GTAC	2 cut(s)	375, 541
RseI	CAYNNNNRTG	1 cut(s)	918
SaqAI	TTAA	3 cut(s)	324, 753, 1152
Sau3AI	GATC	6 cut(s)	157, 271, 733, 814, 922, 1257
Sau96I	GGNCC	6 cut(s)	248, 500, 744, 770, 1176, 1194
ScaI	AGTACT	1 cut(s)	376
ScrFI	CCNGG	3 cut(s)	233, 287, 658
SduI	GDGCHC	3 cut(s)	79, 133, 1059
SfaNI	GCATC	1 cut(s)	1094
SfcI	CTRYAG	1 cut(s)	1145
SinI	GGWCC	3 cut(s)	500, 770, 1176
SmiMI	CAYNNNNRTG	1 cut(s)	918
SmlI	CTYRAG	1 cut(s)	479
SmoI	CTYRAG	1 cut(s)	479
SphI	GCATGC	1 cut(s)	181
Sse9I	AATT	6 cut(s)	43, 260, 310, 489, 727, 802
SseBI	AGGCCT	1 cut(s)	1040
SsiI	CCGC	3 cut(s)	503, 1216, 1236
SspMI	CTAG	2 cut(s)	216, 1011
StuI	AGGCCT	1 cut(s)	1040
StyD4I	CCNGG	3 cut(s)	231, 285, 656
StyI	CCWWGG	3 cut(s)	693, 1172, 1247
TaaI	ACNGT	2 cut(s)	407, 902
TaqI	TCGA	1 cut(s)	1131
TasI	AATT	6 cut(s)	43, 260, 310, 489, 727, 802
TatI	WGTACW	1 cut(s)	374
TauI	GCSGC	1 cut(s)	1239
TfiI	GAWTC	5 cut(s)	119, 569, 587, 623, 893
Tru1I	TTAA	3 cut(s)	324, 753, 1152
Tru9I	TTAA	3 cut(s)	324, 753, 1152
TscAI	CASTG	2 cut(s)	362, 1115
TseFI	GTSAC	4 cut(s)	92, 436, 844, 878
Tsp45I	GTSAC	4 cut(s)	92, 436, 844, 878
TspDTI	ATGAA	5 cut(s)	135, 547, 575, 972, 1214
TspGWI	ACGGA	1 cut(s)	34
TspRI	CASTG	2 cut(s)	362, 1115
Van91I	CCANNNNNTGG	1 cut(s)	634
VpaK11BI	GGWCC	3 cut(s)	500, 770, 1176
VspI	ATTAAT	1 cut(s)	324
XapI	RAATTY	2 cut(s)	260, 310
XceI	RCATGY	1 cut(s)	181
XspI	CTAG	2 cut(s)	216, 1011
ZrmI	AGTACT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.