FvH4_7g16870

No description available

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb7
Physical Location & Seq
Reverse (-)
14422030 .. 14425485
3456 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_7g16870.t1

Sequence Viewer

Length: 1329 bp
ATGGCAGGAGCAGAAGCAAGGGCTGTGTGGCAGAGAACAGCTAATCGTTGTTTTGTCCAAGAAGATGCAAAAAGAGCTCCCAAATTAGCTTATTGCCAATCCTCATCTTCGACAACCAAGCAGGTGGATGCTGGGCCTGCAACTGCAACAGAGGGATTAGATCATCCTGGTGCTGCCTTCATGCCTATTAGTAGGAATCGTTCATATTCCAATCTACCCGCGGACACAAGATGGTGGTTGCAAATGCAACCTAATCATGGCTACCAAAAAGATTTAACCCCTGAACAGTTAAATGCATTGGAAGCTGACATGGAAACATTGAGAGCTGGATTTGTAAAACCAACATCCAAAAACAGTGAGATCGACCAACATAAAGGAGAGTTTACTGATGGTGATTGTGTGAAGACAGGTTATGAAGTTCAAAAGAAAGACGTGGACGCCGCATATGGTGAGAACATGCAGGAACTTCAGTACAAGGACATGAGGGAAAGATATGAAAAGATGGGGATGGACACCATTTCTTATGAACCAGATCCTTGGATGGGAGGTGTGAGGACTGAACCTTGGTGGCGGACAACTGATAGAGATGAACTGGCCTCCTTGGTCGCACAGAAGTCACTTGACCATATTGAGAACTGTGATCTTCCCCCACCTCAGAAACTGTATCATAAGAGACATCCATATGCTGCTCATGCTGGATTGTCTGACCATGATGGATTATTGGGGACATCTTTAGACAGGAAGGCTCAAGCCAACAGTCTTTCCAATATGACTACTCGTGCACAGGGATTTTCTGATACTGGGGTAACATTTGGAAAATGTGGAGAAGCAGCTGATGAAGAGCACTCTGACACATCATTGAGGGATCTGATAGATCTGCAAAAACTTACTGATGGTGACCCTACCAAAGCTCAGCTAATCGAAGCACTGTGCCATTCTCAAACACGTGCAAGGGAAGCCGAGAAGGCAGCAAAGCAAGCTTATGCCGAGAAGGAGCATATTTTTAAGCTCTTCTTTAAACAAGCTTCTCAGCTCTTTGCCTATAAGCAGTGGTTTCAATTGCTGCAGCTGGAAACCCTTTATGTCCAGATTAAGAACAAGGACCAGGCAGGCTCCACTGTTCTCCCGGTGATCCTTCCTTGGATGTCAAGCAAAGATCGAAAATCGCGCAAGAACTGGCGTAGGGTTCCCAAGGGTAAAAGAAGCAGGCGGGTCGACCACGAATATGACATTAACAAGTATGCCGTTGCTCTTGCATTGGGGTTCGGTCTTGTTGGTGCTGGCTTGCTCCTGGGATGGACTGTGGGGTGGATGTTACCTTCTTTCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

443

Amino Acids

49.92

Weight (kDa)

7.19

Isoelectric Point (pI)

45.0

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 112
Acc36I ACCTGC 1 cut(s) 112
AccI GTMKAC 1 cut(s) 1215
AccII CGCG 2 cut(s) 221, 1168
AciI CCGC 5 cut(s) 219, 221, 441, 571, 1210
AclWI GGATC 3 cut(s) 527, 873, 1126
AcuI CTGAAG 1 cut(s) 452
AcvI CACGTG 1 cut(s) 947
AcyI GRCGYC 1 cut(s) 438
AfaI GTAC 1 cut(s) 473
AfiI CCNNNNNNNGG 2 cut(s) 257, 542
AflIII ACRYGT 1 cut(s) 944
AgsI TTSAA 2 cut(s) 422, 1058
AjiI CACGTC 1 cut(s) 433
AjnI CCWGG 3 cut(s) 166, 1104, 1290
Alw21I GWGCWC 3 cut(s) 79, 784, 846
Alw26I GTCTC 1 cut(s) 667
Alw44I GTGCAC 1 cut(s) 780
AlwI GGATC 3 cut(s) 527, 873, 1126
AlwNI CAGNNNCTG 1 cut(s) 661
AoxI GGCC 2 cut(s) 134, 594
ApaLI GTGCAC 1 cut(s) 780
ApeKI GCWGC 6 cut(s) 173, 686, 830, 968, 1063, 1066
AspLEI GCGC 1 cut(s) 1170
AspS9I GGNCC 2 cut(s) 134, 1102
AsuC2I CCSGG 1 cut(s) 1127
AsuHPI GGTGA 4 cut(s) 404, 461, 908, 1141
AvaII GGWCC 1 cut(s) 1102
BaeGI GKGCMC 1 cut(s) 784
BaeI ACNNNNGTAYC 2 cut(s) 789, 822
BanII GRGCYC 1 cut(s) 79
BauI CACGAG 1 cut(s) 777
BbrPI CACGTG 1 cut(s) 947
BbsI GAAGAC 1 cut(s) 410
Bbv12I GWGCWC 3 cut(s) 79, 784, 846
BbvI GCAGC 6 cut(s) 160, 673, 842, 980, 1050, 1078
BccI CCATC 8 cut(s) 225, 383, 496, 502, 535, 707, 887, 1290
BceAI ACGGC 1 cut(s) 1229
BcgI CGANNNNNNTGC 2 cut(s) 1195, 1229
BciT130I CCWGG 3 cut(s) 168, 1106, 1292
BcnI CCSGG 1 cut(s) 1127
BcoDI GTCTC 1 cut(s) 667
BfaI CTAG 1 cut(s) 1327
BfmI CTRYAG 1 cut(s) 1064
BfuAI ACCTGC 1 cut(s) 112
BglI GCCNNNNNGGC 1 cut(s) 965
BglII AGATCT 1 cut(s) 874
BisI GCNGC 7 cut(s) 174, 441, 687, 831, 969, 1064, 1067
BlpI GCTNAGC 1 cut(s) 912
BlsI GCNGC 7 cut(s) 175, 442, 688, 832, 970, 1065, 1068
Bme1390I CCNGG 4 cut(s) 168, 1106, 1127, 1292
Bme18I GGWCC 1 cut(s) 1102
BmgBI CACGTC 1 cut(s) 433
BmgT120I GGNCC 2 cut(s) 134, 1102
BmiI GGNNCC 2 cut(s) 1114, 1188
BmrFI CCNGG 4 cut(s) 168, 1106, 1127, 1292
BmrI ACTGGG 1 cut(s) 810
BmsI GCATC 2 cut(s) 55, 118
BmuI ACTGGG 1 cut(s) 810
BpiI GAAGAC 1 cut(s) 410
Bpu1102I GCTNAGC 1 cut(s) 912
BpuEI CTTGAG 1 cut(s) 732
BpuMI CCSGG 1 cut(s) 1127
BsaAI YACGTR 1 cut(s) 947
BsaHI GRCGYC 1 cut(s) 438
BsaJI CCNNGG 7 cut(s) 219, 536, 563, 600, 1139, 1191, 1291
Bsc4I CCNNNNNNNGG 2 cut(s) 257, 542
Bse1I ACTGG 3 cut(s) 597, 805, 1181
BseBI CCWGG 3 cut(s) 168, 1106, 1292
BseDI CCNNGG 7 cut(s) 219, 536, 563, 600, 1139, 1191, 1291
BseGI GGATG 9 cut(s) 133, 163, 344, 513, 546, 676, 1149, 1301, 1317
BseLI CCNNNNNNNGG 2 cut(s) 257, 542
BseMII CTCAG 3 cut(s) 668, 926, 1043
BseNI ACTGG 3 cut(s) 597, 805, 1181
BseSI GKGCMC 1 cut(s) 784
BseXI GCAGC 6 cut(s) 160, 673, 842, 980, 1050, 1078
BseYI CCCAGC 1 cut(s) 131
Bsh1236I CGCG 2 cut(s) 221, 1168
BshFI GGCC 2 cut(s) 136, 596
BsiHKAI GWGCWC 3 cut(s) 79, 784, 846
BsiSI CCGG 1 cut(s) 1127
BslFI GGGAC 1 cut(s) 739
BslI CCNNNNNNNGG 2 cut(s) 257, 542
BsmAI GTCTC 1 cut(s) 667
BsmFI GGGAC 1 cut(s) 739
BsnI GGCC 2 cut(s) 136, 596
Bsp1286I GDGCHC 3 cut(s) 79, 784, 846
Bsp143I GATC 8 cut(s) 160, 360, 532, 640, 865, 874, 1131, 1156
Bsp1720I GCTNAGC 1 cut(s) 912
BspACI CCGC 5 cut(s) 219, 221, 441, 571, 1210
BspANI GGCC 2 cut(s) 136, 596
BspCNI CTCAG 3 cut(s) 667, 925, 1042
BspFNI CGCG 2 cut(s) 221, 1168
BspLI GGNNCC 2 cut(s) 1114, 1188
BspMAI CTGCAG 1 cut(s) 1068
BspMI ACCTGC 1 cut(s) 112
BspPI GGATC 3 cut(s) 527, 873, 1126
BspQI GCTCTTC 2 cut(s) 834, 1016
BsrI ACTGG 3 cut(s) 597, 805, 1181
BssECI CCNNGG 7 cut(s) 219, 536, 563, 600, 1139, 1191, 1291
BssMI GATC 8 cut(s) 160, 360, 532, 640, 865, 874, 1131, 1156
BssNI GRCGYC 1 cut(s) 438
BssSI CACGAG 1 cut(s) 777
BssT1I CCWWGG 5 cut(s) 536, 563, 600, 1139, 1191
Bst2BI CACGAG 1 cut(s) 777
Bst2UI CCWGG 3 cut(s) 168, 1106, 1292
Bst4CI ACNGT 8 cut(s) 288, 356, 638, 663, 758, 930, 1120, 1303
Bst6I CTCTTC 2 cut(s) 834, 1016
BstACI GRCGYC 1 cut(s) 438
BstBAI YACGTR 1 cut(s) 947
BstC8I GCNNGC 6 cut(s) 138, 978, 1111, 1208, 1282, 1286
BstDEI CTNAG 3 cut(s) 654, 912, 1029
BstDSI CCRYGG 1 cut(s) 219
BstEII GGTNACC 1 cut(s) 896
BstF5I GGATG 9 cut(s) 133, 163, 344, 513, 546, 676, 1149, 1301, 1317
BstFNI CGCG 2 cut(s) 221, 1168
BstHHI GCGC 1 cut(s) 1170
BstKTI GATC 8 cut(s) 163, 363, 535, 643, 868, 877, 1134, 1159
BstMAI GTCTC 1 cut(s) 667
BstMBI GATC 8 cut(s) 160, 360, 532, 640, 865, 874, 1131, 1156
BstMWI GCNNNNNNNGC 7 cut(s) 74, 137, 302, 692, 956, 965, 977
BstNI CCWGG 3 cut(s) 168, 1106, 1292
BstNSI RCATGY 1 cut(s) 460
BstPI GGTNACC 1 cut(s) 896
BstSCI CCNGG 4 cut(s) 166, 1104, 1125, 1290
BstSFI CTRYAG 1 cut(s) 1064
BstSLI GKGCMC 1 cut(s) 784
BstUI CGCG 2 cut(s) 221, 1168
BstV1I GCAGC 6 cut(s) 160, 673, 842, 980, 1050, 1078
BstV2I GAAGAC 1 cut(s) 410
BstX2I RGATCY 3 cut(s) 532, 865, 874
BstXI CCANNNNNNTGG 2 cut(s) 124, 537
BstYI RGATCY 3 cut(s) 532, 865, 874
BsuRI GGCC 2 cut(s) 136, 596
BtgI CCRYGG 1 cut(s) 219
BtrI CACGTC 1 cut(s) 433
BtsCI GGATG 9 cut(s) 133, 163, 344, 513, 546, 676, 1149, 1301, 1317
BtsI GCAGTG 1 cut(s) 1055
BtsIMutI CAGTG 4 cut(s) 361, 926, 1055, 1116
BveI ACCTGC 1 cut(s) 112
Cac8I GCNNGC 6 cut(s) 138, 978, 1111, 1208, 1282, 1286
CaiI CAGNNNCTG 1 cut(s) 661
CfoI GCGC 1 cut(s) 1170
Cfr13I GGNCC 2 cut(s) 134, 1102
Cfr42I CCGCGG 1 cut(s) 222
CseI GACGC 1 cut(s) 446
Csp6I GTAC 1 cut(s) 472
CviAII CATG 7 cut(s) 181, 257, 310, 457, 481, 692, 710
CviQI GTAC 1 cut(s) 472
DdeI CTNAG 3 cut(s) 654, 912, 1029
DpnI GATC 8 cut(s) 162, 362, 534, 642, 867, 876, 1133, 1158
DpnII GATC 8 cut(s) 160, 360, 532, 640, 865, 874, 1131, 1156
DraI TTTAAA 1 cut(s) 1018
Eam1104I CTCTTC 2 cut(s) 834, 1016
EarI CTCTTC 2 cut(s) 834, 1016
EciI GGCGGA 1 cut(s) 586
Ecl136II GAGCTC 1 cut(s) 77
Eco130I CCWWGG 5 cut(s) 536, 563, 600, 1139, 1191
Eco24I GRGCYC 1 cut(s) 79
Eco47I GGWCC 1 cut(s) 1102
Eco53kI GAGCTC 1 cut(s) 77
Eco57I CTGAAG 1 cut(s) 452
Eco72I CACGTG 1 cut(s) 947
Eco91I GGTNACC 1 cut(s) 896
EcoICRI GAGCTC 1 cut(s) 77
EcoO65I GGTNACC 1 cut(s) 896
EcoRII CCWGG 3 cut(s) 166, 1104, 1290
EcoT14I CCWWGG 5 cut(s) 536, 563, 600, 1139, 1191
EcoT22I ATGCAT 1 cut(s) 298
EcoT38I GRGCYC 1 cut(s) 79
ErhI CCWWGG 5 cut(s) 536, 563, 600, 1139, 1191
FaeI CATG 7 cut(s) 184, 260, 313, 460, 484, 695, 713
FalI AAGNNNNNCTT 2 cut(s) 998, 1030
FaqI GGGAC 1 cut(s) 739
FatI CATG 7 cut(s) 180, 256, 309, 456, 480, 691, 709
FauI CCCGC 2 cut(s) 226, 1203
FauNDI CATATG 2 cut(s) 445, 682
FblI GTMKAC 1 cut(s) 1215
Fnu4HI GCNGC 7 cut(s) 174, 441, 687, 831, 969, 1064, 1067
FokI GGATG 9 cut(s) 140, 150, 331, 520, 553, 663, 1156, 1308, 1324
FriOI GRGCYC 1 cut(s) 79
Fsp4HI GCNGC 7 cut(s) 174, 441, 687, 831, 969, 1064, 1067
FspBI CTAG 1 cut(s) 1327
GlaI GCGC 1 cut(s) 1169
GluI GCNGC 7 cut(s) 174, 441, 687, 831, 969, 1064, 1067
GsaI CCCAGC 1 cut(s) 135
HaeIII GGCC 2 cut(s) 136, 596
HapII CCGG 1 cut(s) 1127
HgaI GACGC 1 cut(s) 446
HhaI GCGC 1 cut(s) 1170
Hin1I GRCGYC 1 cut(s) 438
Hin1II CATG 7 cut(s) 184, 260, 313, 460, 484, 695, 713
Hin6I GCGC 1 cut(s) 1168
HinP1I GCGC 1 cut(s) 1168
HincII GTYRAC 1 cut(s) 1216
HindII GTYRAC 1 cut(s) 1216
HindIII AAGCTT 2 cut(s) 978, 1023
HinfI GANTC 1 cut(s) 196
HpaII CCGG 1 cut(s) 1127
HphI GGTGA 4 cut(s) 404, 461, 908, 1141
Hpy166II GTNNAC 4 cut(s) 384, 436, 782, 1216
Hpy188I TCNGA 5 cut(s) 657, 706, 796, 850, 870
Hpy188III TCNNGA 1 cut(s) 1087
Hpy8I GTNNAC 4 cut(s) 384, 436, 782, 1216
HpyAV CCTTC 6 cut(s) 187, 736, 958, 985, 1145, 1329
HpyCH4III ACNGT 8 cut(s) 288, 356, 638, 663, 758, 930, 1120, 1303
HpyCH4IV ACGT 2 cut(s) 432, 946
HpyF10VI GCNNNNNNNGC 7 cut(s) 74, 137, 302, 692, 956, 965, 977
HpyF3I CTNAG 3 cut(s) 654, 912, 1029
HpySE526I ACGT 2 cut(s) 432, 946
Hsp92I GRCGYC 1 cut(s) 438
Hsp92II CATG 7 cut(s) 184, 260, 313, 460, 484, 695, 713
HspAI GCGC 1 cut(s) 1168
KspI CCGCGG 1 cut(s) 222
Kzo9I GATC 8 cut(s) 160, 360, 532, 640, 865, 874, 1131, 1156
LguI GCTCTTC 2 cut(s) 834, 1016
LmnI GCTCC 5 cut(s) 8, 82, 994, 1118, 1293
Lsp1109I GCAGC 6 cut(s) 160, 673, 842, 980, 1050, 1078
LweI GCATC 2 cut(s) 55, 118
MaeI CTAG 1 cut(s) 1327
MaeII ACGT 2 cut(s) 432, 946
MaeIII GTNAC 4 cut(s) 615, 805, 896, 1314
MalI GATC 8 cut(s) 162, 362, 534, 642, 867, 876, 1133, 1158
MboI GATC 8 cut(s) 160, 360, 532, 640, 865, 874, 1131, 1156
MboII GAAGA 6 cut(s) 74, 99, 415, 635, 851, 1003
MfeI CAATTG 1 cut(s) 1058
MflI RGATCY 3 cut(s) 532, 865, 874
MhlI GDGCHC 3 cut(s) 79, 784, 846
MluCI AATT 2 cut(s) 83, 1058
MnlI CCTC 8 cut(s) 112, 145, 477, 539, 546, 607, 663, 855
Mph1103I ATGCAT 1 cut(s) 298
MseI TTAA 6 cut(s) 275, 290, 1005, 1017, 1092, 1233
MslI CAYNNNNRTG 3 cut(s) 168, 681, 1224
MspA1I CMGCKG 3 cut(s) 221, 833, 1069
MspI CCGG 1 cut(s) 1127
MspR9I CCNGG 4 cut(s) 168, 1106, 1127, 1292
MunI CAATTG 1 cut(s) 1058
MvaI CCWGG 3 cut(s) 168, 1106, 1292
MvnI CGCG 2 cut(s) 221, 1168
MwoI GCNNNNNNNGC 7 cut(s) 74, 137, 302, 692, 956, 965, 977
NciI CCSGG 1 cut(s) 1127
NdeI CATATG 2 cut(s) 445, 682
NdeII GATC 8 cut(s) 160, 360, 532, 640, 865, 874, 1131, 1156
NlaIII CATG 7 cut(s) 184, 260, 313, 460, 484, 695, 713
NlaIV GGNNCC 2 cut(s) 1114, 1188
NmeAIII GCCGAG 2 cut(s) 985, 1012
NmuCI GTSAC 2 cut(s) 615, 896
NsiI ATGCAT 1 cut(s) 298
NspI RCATGY 1 cut(s) 460
PaqCI CACCTGC 1 cut(s) 112
PciSI GCTCTTC 2 cut(s) 834, 1016
PfeI GAWTC 1 cut(s) 196
PkrI GCNGC 7 cut(s) 175, 442, 688, 832, 970, 1065, 1068
PmaCI CACGTG 1 cut(s) 947
PmlI CACGTG 1 cut(s) 947
Ppu21I YACGTR 1 cut(s) 947
Psp124BI GAGCTC 1 cut(s) 79
Psp6I CCWGG 3 cut(s) 166, 1104, 1290
PspCI CACGTG 1 cut(s) 947
PspEI GGTNACC 1 cut(s) 896
PspFI CCCAGC 1 cut(s) 131
PspGI CCWGG 3 cut(s) 166, 1104, 1290
PspN4I GGNNCC 2 cut(s) 1114, 1188
PspPI GGNCC 2 cut(s) 134, 1102
PsrI GAACNNNNNNTAC 2 cut(s) 184, 216
PstI CTGCAG 1 cut(s) 1068
PstNI CAGNNNCTG 1 cut(s) 661
PsuI RGATCY 3 cut(s) 532, 865, 874
PvuII CAGCTG 2 cut(s) 833, 1069
RsaI GTAC 1 cut(s) 473
RsaNI GTAC 1 cut(s) 472
RseI CAYNNNNRTG 3 cut(s) 168, 681, 1224
SacI GAGCTC 1 cut(s) 79
SacII CCGCGG 1 cut(s) 222
SalI GTCGAC 1 cut(s) 1214
SapI GCTCTTC 2 cut(s) 834, 1016
SaqAI TTAA 6 cut(s) 275, 290, 1005, 1017, 1092, 1233
SatI GCNGC 7 cut(s) 174, 441, 687, 831, 969, 1064, 1067
Sau3AI GATC 8 cut(s) 160, 360, 532, 640, 865, 874, 1131, 1156
Sau96I GGNCC 2 cut(s) 134, 1102
ScrFI CCNGG 4 cut(s) 168, 1106, 1127, 1292
SduI GDGCHC 3 cut(s) 79, 784, 846
SfaNI GCATC 2 cut(s) 55, 118
SfcI CTRYAG 1 cut(s) 1064
Sfr303I CCGCGG 1 cut(s) 222
SgrBI CCGCGG 1 cut(s) 222
SinI GGWCC 1 cut(s) 1102
SmiMI CAYNNNNRTG 3 cut(s) 168, 681, 1224
SmlI CTYRAG 1 cut(s) 747
SmoI CTYRAG 1 cut(s) 747
Sse9I AATT 2 cut(s) 83, 1058
SsiI CCGC 5 cut(s) 219, 221, 441, 571, 1210
SspMI CTAG 1 cut(s) 1327
SstI GAGCTC 1 cut(s) 79
StyD4I CCNGG 4 cut(s) 166, 1104, 1125, 1290
StyI CCWWGG 5 cut(s) 536, 563, 600, 1139, 1191
TaaI ACNGT 8 cut(s) 288, 356, 638, 663, 758, 930, 1120, 1303
TaiI ACGT 2 cut(s) 435, 949
TaqI TCGA 5 cut(s) 110, 363, 921, 1159, 1215
TaqII GACCGA 1 cut(s) 1256
TasI AATT 2 cut(s) 83, 1058
TatI WGTACW 1 cut(s) 471
TauI GCSGC 1 cut(s) 443
TfiI GAWTC 1 cut(s) 196
Tru1I TTAA 6 cut(s) 275, 290, 1005, 1017, 1092, 1233
Tru9I TTAA 6 cut(s) 275, 290, 1005, 1017, 1092, 1233
TscAI CASTG 4 cut(s) 361, 933, 1055, 1123
TseFI GTSAC 2 cut(s) 615, 896
TseI GCWGC 6 cut(s) 173, 686, 830, 968, 1063, 1066
Tsp45I GTSAC 2 cut(s) 615, 896
TspDTI ATGAA 7 cut(s) 169, 192, 429, 510, 540, 603, 852
TspRI CASTG 4 cut(s) 361, 933, 1055, 1123
VneI GTGCAC 1 cut(s) 780
VpaK11BI GGWCC 1 cut(s) 1102
XceI RCATGY 1 cut(s) 460
XmiI GTMKAC 1 cut(s) 1215
XspI CTAG 1 cut(s) 1327
Zsp2I ATGCAT 1 cut(s) 298
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.