Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8261609.1

Orthogroup ID

OG0002482

Physical Location & Seq

Genomic Coordinates Forward (+)

81 .. 809

Gene Structure 729 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8261609.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

atggcgggagcagaagcaagggctgtgtggcagagaacagctaatcgttgctttgtccaagaagatgcaaaaagagctcccaaattagcttattgtcaatcctcatcttcaacaaccaagcaggtgggtgctgggcctgcaactgcaacagaaggattagatcatcctggtgttggcttcatgcctattaataggaatcgttcatattccaatctacccccagacacaagatggtggctgcaaatgcaacctaactatggctaccaaaaagatttaacctatgaacagttaaatgagttggaggctgacatggaaacactgagagctgggtttgtagaacaaacatccaaaaacagtgagttcgaccaacataaaggaaaatttactgatggtgattgtatgaagacaggttatgaagtccaaaagaaagatgtagacgctgaatatggtgagaacatacaggaacttcggtacaaggacatgagggaaacatatgaaaaaatggggatagataccattgattgcccagtttcagaacagtccaaggagttgtcttgtgaaccagaatatccttggatgggaggtgggaggactgaaccttggtggcggacaactgatagagatgaactggcctccttggttgcacaaaagtcacttaaccatattgagaactgtgatcttcccccacctcagaaactgtatcataagagacatccatatgctgctcat

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

27.86

Weight (kDa)

5.36

Isoelectric Point (pI)

55.0

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002482)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G46550 AT2G46550 AT2G46550
fragaria_vesca	FvH4_7g16870 FvH4_7g31981
malus_domestica	MD01G1083700.v1.1 MD01G1222700.v1.1 MD07G1152400.v1.1 MD07G1293300.v1.1
prunus_persica	Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G190700_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1 Prupe.2G313100_v2.0.a1
pyrus_communis	pycom01g23210 pycom07g15050
rosa_chinensis	RchiOBHm_Chr1g0360101 RchiOBHm_Chr1g0381491
rosa_laevigata	RLG00000026228 RLG00000027833
rosa_multiflora	Rmu_co8234723.1_g000001 Rmu_co8261609.1_g000001 Rmu_co8290353.1_g000001 Rmu_sc0003688.1_g000008 Rmu_sc0006872.1_g000027 Rmu_sc0040454.1_g000001 Rmu_ssc0000368.1_g000040
rosa_roxburghii	Rroxscaffold_4G00278620
rosa_rugosa	Rorug01G0275000 Rorug01G0275100 Rorug01G0428900
rosa_samantha	Rh1AG288900 Rh1BG254400 Rh1BG409400 Rh1CG271900 Rh1CG423900 Rh1DG283500 Rh1DG440700
rosa_wichuraiana	Rw1G025620 Rw1G039470

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	112
Acc36I	ACCTGC	1 cut(s)	112
AccI	GTMKAC	1 cut(s)	435
AciI	CCGC	2 cut(s)	5, 607
AcsI	RAATTY	1 cut(s)	380
AfaI	GTAC	1 cut(s)	473
AfiI	CCNNNNNNNGG	3 cut(s)	173, 257, 578
AgsI	TTSAA	1 cut(s)	111
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	4 cut(s)	41, 77, 89, 326
AluI	AGCT	4 cut(s)	41, 77, 89, 326
Alw21I	GWGCWC	1 cut(s)	79
Alw26I	GTCTC	1 cut(s)	703
AlwNI	CAGNNNCTG	1 cut(s)	697
AoxI	GGCC	2 cut(s)	134, 630
ApeKI	GCWGC	2 cut(s)	238, 722
ApoI	RAATTY	1 cut(s)	380
AseI	ATTAAT	1 cut(s)	189
AspS9I	GGNCC	1 cut(s)	134
AsuHPI	GGTGA	2 cut(s)	404, 461
BanII	GRGCYC	1 cut(s)	79
BbsI	GAAGAC	1 cut(s)	410
Bbv12I	GWGCWC	1 cut(s)	79
BbvI	GCAGC	2 cut(s)	225, 709
BccI	CCATC	3 cut(s)	225, 383, 571
BciT130I	CCWGG	1 cut(s)	168
BcoDI	GTCTC	1 cut(s)	703
BfuAI	ACCTGC	1 cut(s)	112
BisI	GCNGC	2 cut(s)	239, 723
BlsI	GCNGC	2 cut(s)	240, 724
Bme1390I	CCNGG	1 cut(s)	168
BmgT120I	GGNCC	1 cut(s)	134
BmrFI	CCNGG	1 cut(s)	168
BmrI	ACTGGG	1 cut(s)	521
BmsI	GCATC	1 cut(s)	55
BmuI	ACTGGG	1 cut(s)	521
BpiI	GAAGAC	1 cut(s)	410
BsaJI	CCNNGG	4 cut(s)	543, 572, 599, 636
Bsc4I	CCNNNNNNNGG	3 cut(s)	173, 257, 578
Bse1I	ACTGG	2 cut(s)	527, 633
BseBI	CCWGG	1 cut(s)	168
BseDI	CCNNGG	4 cut(s)	543, 572, 599, 636
BseGI	GGATG	4 cut(s)	163, 344, 582, 712
BseLI	CCNNNNNNNGG	3 cut(s)	173, 257, 578
BseMII	CTCAG	2 cut(s)	311, 704
BseNI	ACTGG	2 cut(s)	527, 633
BseXI	GCAGC	2 cut(s)	225, 709
BseYI	CCCAGC	2 cut(s)	131, 326
BshFI	GGCC	2 cut(s)	136, 632
BsiHKAI	GWGCWC	1 cut(s)	79
BslI	CCNNNNNNNGG	3 cut(s)	173, 257, 578
BsmAI	GTCTC	1 cut(s)	703
BsnI	GGCC	2 cut(s)	136, 632
Bsp1286I	GDGCHC	1 cut(s)	79
Bsp143I	GATC	2 cut(s)	160, 676
BspACI	CCGC	2 cut(s)	5, 607
BspANI	GGCC	2 cut(s)	136, 632
BspCNI	CTCAG	2 cut(s)	312, 703
BspMI	ACCTGC	1 cut(s)	112
BsrI	ACTGG	2 cut(s)	527, 633
BssECI	CCNNGG	4 cut(s)	543, 572, 599, 636
BssMI	GATC	2 cut(s)	160, 676
BssT1I	CCWWGG	4 cut(s)	543, 572, 599, 636
Bst2UI	CCWGG	1 cut(s)	168
Bst4CI	ACNGT	5 cut(s)	288, 356, 540, 674, 699
BstC8I	GCNNGC	1 cut(s)	138
BstDEI	CTNAG	2 cut(s)	320, 690
BstF5I	GGATG	4 cut(s)	163, 344, 582, 712
BstKTI	GATC	2 cut(s)	163, 679
BstMAI	GTCTC	1 cut(s)	703
BstMBI	GATC	2 cut(s)	160, 676
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 137, 244
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	1 cut(s)	166
BstV1I	GCAGC	2 cut(s)	225, 709
BstV2I	GAAGAC	1 cut(s)	410
BstXI	CCANNNNNNTGG	1 cut(s)	124
BsuRI	GGCC	2 cut(s)	136, 632
BtsCI	GGATG	4 cut(s)	163, 344, 582, 712
BtsIMutI	CAGTG	2 cut(s)	317, 361
BveI	ACCTGC	1 cut(s)	112
Cac8I	GCNNGC	1 cut(s)	138
CaiI	CAGNNNCTG	1 cut(s)	697
Cfr13I	GGNCC	1 cut(s)	134
CseI	GACGC	1 cut(s)	446
Csp6I	GTAC	1 cut(s)	472
CviAII	CATG	3 cut(s)	181, 310, 481
CviQI	GTAC	1 cut(s)	472
DdeI	CTNAG	2 cut(s)	320, 690
DpnI	GATC	2 cut(s)	162, 678
DpnII	GATC	2 cut(s)	160, 676
EciI	GGCGGA	1 cut(s)	622
Ecl136II	GAGCTC	1 cut(s)	77
Eco130I	CCWWGG	4 cut(s)	543, 572, 599, 636
Eco24I	GRGCYC	1 cut(s)	79
Eco53kI	GAGCTC	1 cut(s)	77
EcoICRI	GAGCTC	1 cut(s)	77
EcoRII	CCWGG	1 cut(s)	166
EcoT14I	CCWWGG	4 cut(s)	543, 572, 599, 636
EcoT38I	GRGCYC	1 cut(s)	79
ErhI	CCWWGG	4 cut(s)	543, 572, 599, 636
FaeI	CATG	3 cut(s)	184, 313, 484
FatI	CATG	3 cut(s)	180, 309, 480
FauNDI	CATATG	2 cut(s)	493, 718
FblI	GTMKAC	1 cut(s)	435
Fnu4HI	GCNGC	2 cut(s)	239, 723
FokI	GGATG	4 cut(s)	150, 331, 589, 699
FriOI	GRGCYC	1 cut(s)	79
Fsp4HI	GCNGC	2 cut(s)	239, 723
GluI	GCNGC	2 cut(s)	239, 723
GsaI	CCCAGC	2 cut(s)	135, 330
HaeIII	GGCC	2 cut(s)	136, 632
HgaI	GACGC	1 cut(s)	446
Hin1II	CATG	3 cut(s)	184, 313, 484
HinfI	GANTC	1 cut(s)	196
HphI	GGTGA	2 cut(s)	404, 461
Hpy166II	GTNNAC	2 cut(s)	436, 560
Hpy188I	TCNGA	2 cut(s)	535, 693
Hpy8I	GTNNAC	2 cut(s)	436, 560
HpyAV	CCTTC	1 cut(s)	146
HpyCH4III	ACNGT	5 cut(s)	288, 356, 540, 674, 699
HpyCH4V	TGCA	6 cut(s)	68, 140, 146, 241, 247, 644
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 137, 244
HpyF3I	CTNAG	2 cut(s)	320, 690
Hsp92II	CATG	3 cut(s)	184, 313, 484
Kzo9I	GATC	2 cut(s)	160, 676
LmnI	GCTCC	2 cut(s)	8, 82
Lsp1109I	GCAGC	2 cut(s)	225, 709
LweI	GCATC	1 cut(s)	55
MaeIII	GTNAC	1 cut(s)	651
MalI	GATC	2 cut(s)	162, 678
MboI	GATC	2 cut(s)	160, 676
MboII	GAAGA	4 cut(s)	74, 99, 415, 671
MhlI	GDGCHC	1 cut(s)	79
MluCI	AATT	2 cut(s)	83, 380
MmeI	TCCRAC	1 cut(s)	279
MnlI	CCTC	7 cut(s)	112, 295, 477, 575, 582, 643, 699
MseI	TTAA	4 cut(s)	189, 275, 290, 657
MslI	CAYNNNNRTG	2 cut(s)	168, 717
MspR9I	CCNGG	1 cut(s)	168
MvaI	CCWGG	1 cut(s)	168
MwoI	GCNNNNNNNGC	3 cut(s)	74, 137, 244
NdeI	CATATG	2 cut(s)	493, 718
NdeII	GATC	2 cut(s)	160, 676
NlaIII	CATG	3 cut(s)	184, 313, 484
NmuCI	GTSAC	1 cut(s)	651
PaqCI	CACCTGC	1 cut(s)	112
PfeI	GAWTC	1 cut(s)	196
PkrI	GCNGC	2 cut(s)	240, 724
PshBI	ATTAAT	1 cut(s)	189
Psp124BI	GAGCTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	2 cut(s)	131, 326
PspGI	CCWGG	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	134
PstNI	CAGNNNCTG	1 cut(s)	697
RsaI	GTAC	1 cut(s)	473
RsaNI	GTAC	1 cut(s)	472
RseI	CAYNNNNRTG	2 cut(s)	168, 717
SacI	GAGCTC	1 cut(s)	79
SaqAI	TTAA	4 cut(s)	189, 275, 290, 657
SatI	GCNGC	2 cut(s)	239, 723
Sau3AI	GATC	2 cut(s)	160, 676
Sau96I	GGNCC	1 cut(s)	134
ScrFI	CCNGG	1 cut(s)	168
SduI	GDGCHC	1 cut(s)	79
SfaNI	GCATC	1 cut(s)	55
SmiMI	CAYNNNNRTG	2 cut(s)	168, 717
Sse9I	AATT	2 cut(s)	83, 380
SsiI	CCGC	2 cut(s)	5, 607
SstI	GAGCTC	1 cut(s)	79
StyD4I	CCNGG	1 cut(s)	166
StyI	CCWWGG	4 cut(s)	543, 572, 599, 636
TaaI	ACNGT	5 cut(s)	288, 356, 540, 674, 699
TaqI	TCGA	1 cut(s)	363
TasI	AATT	2 cut(s)	83, 380
TfiI	GAWTC	1 cut(s)	196
Tru1I	TTAA	4 cut(s)	189, 275, 290, 657
Tru9I	TTAA	4 cut(s)	189, 275, 290, 657
TscAI	CASTG	2 cut(s)	324, 361
TseFI	GTSAC	1 cut(s)	651
TseI	GCWGC	2 cut(s)	238, 722
Tsp45I	GTSAC	1 cut(s)	651
TspDTI	ATGAA	7 cut(s)	169, 192, 297, 416, 429, 510, 639
TspRI	CASTG	2 cut(s)	324, 361
VspI	ATTAAT	1 cut(s)	189
XapI	RAATTY	1 cut(s)	380
XcmI	CCANNNNNNNNNTGG	2 cut(s)	228, 570
XmiI	GTMKAC	1 cut(s)	435

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.